HEADER HYDROLASE INHIBITOR 14-SEP-22 8B2N TITLE POTEMPIN A (POTA) FROM TANNERELLA FORSYTHIA IN COMPLEX WITH THE TITLE 2 CATALYTIC DOMAIN OF HUMAN MMP-12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: MME,MACROPHAGE ELASTASE,HME,MATRIX METALLOPROTEINASE-12,MMP- COMPND 5 12; COMPND 6 EC: 3.4.24.65; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TANNERELLA FORSYTHIA POTEMPIN A (POTA); COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP12, HME; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: TANNERELLA FORSYTHIA; SOURCE 10 ORGANISM_TAXID: 28112; SOURCE 11 GENE: CLI86_08900; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPEPTIDASE INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.POTEMPA,M.KSIAZEK,T.GOULAS,A.CUPPARI,A.RODRIGUEZ-BANQUERI, AUTHOR 2 J.L.AROLAS,M.LOPEZ-PELEGRIN,I.GARCIA-FERRER,T.GUEVARA REVDAT 3 07-FEB-24 8B2N 1 REMARK REVDAT 2 22-FEB-23 8B2N 1 JRNL REVDAT 1 21-DEC-22 8B2N 0 JRNL AUTH M.KSIAZEK,T.GOULAS,D.MIZGALSKA,A.RODRIGUEZ-BANQUERI, JRNL AUTH 2 U.ECKHARD,F.VEILLARD,I.WALIGORSKA,M.BENEDYK-MACHACZKA, JRNL AUTH 3 A.M.SOCHAJ-GREGORCZYK,M.MADEJ,I.B.THOGERSEN,J.J.ENGHILD, JRNL AUTH 4 A.CUPPARI,J.L.AROLAS,I.DE DIEGO,M.LOPEZ-PELEGRIN, JRNL AUTH 5 I.GARCIA-FERRER,T.GUEVARA,V.DIVE,M.L.ZANI,T.MOREAU, JRNL AUTH 6 J.POTEMPA,F.X.GOMIS-RUTH JRNL TITL A UNIQUE NETWORK OF ATTACK, DEFENCE AND COMPETENCE ON THE JRNL TITL 2 OUTER MEMBRANE OF THE PERIODONTITIS PATHOGEN TANNERELLA JRNL TITL 3 FORSYTHIA. JRNL REF CHEM SCI V. 14 869 2023 JRNL REFN ISSN 2041-6520 JRNL PMID 36755705 JRNL DOI 10.1039/D2SC04166A REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KSIAZEK,D.MIZGALSKA,S.EICK,I.B.THOGERSEN,J.J.ENGHILD, REMARK 1 AUTH 2 J.POTEMPA REMARK 1 TITL KLIKK PROTEASES OF TANNERELLA FORSYTHIA: PUTATIVE VIRULENCE REMARK 1 TITL 2 FACTORS WITH A UNIQUE DOMAIN STRUCTURE. REMARK 1 REF FRONT MICROBIOL V. 6 312 2015 REMARK 1 REFN ESSN 1664-302X REMARK 1 PMID 25954253 REMARK 1 DOI 10.3389/FMICB.2015.00312 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.970 REMARK 3 FREE R VALUE TEST SET COUNT : 798 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.90 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2897 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2550 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2849 REMARK 3 BIN R VALUE (WORKING SET) : 0.2549 REMARK 3 BIN FREE R VALUE : 0.2657 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.66 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3947 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.39730 REMARK 3 B22 (A**2) : 8.11810 REMARK 3 B33 (A**2) : -14.51540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.155 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.149 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.136 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4046 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5482 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1823 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 684 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4046 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 536 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 52 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4945 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.55 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|106 - 263 A|301 - 305 A|479 A|475 A|413 A|427} REMARK 3 ORIGIN FOR THE GROUP (A): 11.1011 -12.2570 -30.0813 REMARK 3 T TENSOR REMARK 3 T11: -0.0310 T22: 0.0306 REMARK 3 T33: -0.0505 T12: 0.0337 REMARK 3 T13: 0.0235 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 2.1261 L22: 3.9570 REMARK 3 L33: 1.8328 L12: -1.2689 REMARK 3 L13: 0.2548 L23: -0.4388 REMARK 3 S TENSOR REMARK 3 S11: 0.2618 S12: 0.2332 S13: 0.0512 REMARK 3 S21: -0.3423 S22: -0.1868 S23: 0.1155 REMARK 3 S31: 0.0024 S32: -0.0535 S33: -0.0750 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|27 - 118 } REMARK 3 ORIGIN FOR THE GROUP (A): 37.2822 -11.0538 -27.1046 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: 0.1005 REMARK 3 T33: 0.2312 T12: -0.0370 REMARK 3 T13: 0.0700 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 3.9020 L22: 2.2879 REMARK 3 L33: 0.3860 L12: 0.9735 REMARK 3 L13: -0.8745 L23: 0.4521 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.1506 S13: 0.1931 REMARK 3 S21: -0.2396 S22: 0.2239 S23: -0.3950 REMARK 3 S31: -0.1344 S32: 0.1005 S33: -0.1901 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {C|106 - 263 C|301 - 305 C|463 C|450 C|406 C|419} REMARK 3 ORIGIN FOR THE GROUP (A): -28.9863 -2.1409 -61.7988 REMARK 3 T TENSOR REMARK 3 T11: -0.0398 T22: 0.0108 REMARK 3 T33: 0.0235 T12: 0.0032 REMARK 3 T13: -0.0253 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.9116 L22: 3.8177 REMARK 3 L33: 2.1673 L12: -0.2980 REMARK 3 L13: 0.3015 L23: 0.7711 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: 0.0455 S13: -0.3270 REMARK 3 S21: -0.0630 S22: -0.0983 S23: 0.5783 REMARK 3 S31: 0.1271 S32: -0.0849 S33: 0.0668 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {D|24 - 118 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.0581 -1.3928 -59.1478 REMARK 3 T TENSOR REMARK 3 T11: -0.0097 T22: 0.1256 REMARK 3 T33: -0.0340 T12: 0.0484 REMARK 3 T13: -0.0261 T23: -0.0944 REMARK 3 L TENSOR REMARK 3 L11: 4.0025 L22: 2.5975 REMARK 3 L33: 1.7793 L12: -0.3494 REMARK 3 L13: -0.7503 L23: 0.4925 REMARK 3 S TENSOR REMARK 3 S11: -0.0999 S12: 0.1058 S13: -0.1389 REMARK 3 S21: 0.0395 S22: 0.2461 S23: -0.3971 REMARK 3 S31: 0.1527 S32: 0.2106 S33: -0.1462 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40486 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 67.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.83500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JK3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE POTA:MMP-12 COMPLEX AT 8.5 MG/ML REMARK 280 IN 2.5 MM CALCIUM CHLORIDE, 150 MM SODIUM CHLORIDE, 20 MM TRIS- REMARK 280 HCL PH 7.5 WAS CRYSTALLISED FROM 30% (W/V) PEG 3,000, 200 MM REMARK 280 SODIUM CHLORIDE, 100 MM TRIS-HCL PH 7.0., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 GLY C 208 REMARK 465 GLY C 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 168 35.96 -140.14 REMARK 500 HIS A 206 -126.59 -123.13 REMARK 500 SER A 207 -165.90 -106.33 REMARK 500 ASP B 64 26.66 -154.96 REMARK 500 HIS C 168 37.24 -140.09 REMARK 500 HIS C 206 -152.01 -119.86 REMARK 500 ASP D 64 25.66 -156.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 124 OD2 51.1 REMARK 620 3 GLU A 199 O 141.9 162.5 REMARK 620 4 GLU A 199 OE2 92.8 93.8 75.7 REMARK 620 5 GLU A 201 O 75.1 120.1 77.3 115.2 REMARK 620 6 HOH A 475 O 105.7 90.0 94.9 158.8 80.3 REMARK 620 7 HOH A 479 O 132.9 81.9 84.2 90.9 142.4 68.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 O REMARK 620 2 GLY A 190 O 165.9 REMARK 620 3 GLY A 192 O 92.2 92.9 REMARK 620 4 ASP A 194 OD2 93.0 100.0 91.2 REMARK 620 5 HOH A 413 O 91.5 81.8 171.7 96.0 REMARK 620 6 HOH A 427 O 85.9 82.0 80.4 171.4 92.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 ASP A 170 OD1 112.5 REMARK 620 3 HIS A 183 NE2 120.4 110.5 REMARK 620 4 HIS A 196 ND1 109.4 90.0 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD2 REMARK 620 2 GLY A 176 O 90.0 REMARK 620 3 GLY A 178 O 84.5 83.0 REMARK 620 4 ILE A 180 O 89.3 170.1 87.2 REMARK 620 5 ASP A 198 OD1 86.8 88.3 167.7 101.5 REMARK 620 6 GLU A 201 OE2 164.9 89.9 80.5 88.3 108.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 218 NE2 REMARK 620 2 HIS A 222 NE2 100.8 REMARK 620 3 HIS A 228 NE2 109.4 102.0 REMARK 620 4 ASP B 64 OD1 129.2 119.3 92.3 REMARK 620 5 ASP B 64 OD2 91.5 93.5 150.7 58.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 OD1 REMARK 620 2 ASP C 124 OD2 51.2 REMARK 620 3 GLU C 199 O 141.5 161.6 REMARK 620 4 GLU C 199 OE2 92.1 93.4 75.0 REMARK 620 5 GLU C 201 O 75.5 120.8 77.4 114.7 REMARK 620 6 HOH C 450 O 95.9 83.8 104.3 167.0 77.3 REMARK 620 7 HOH C 463 O 133.8 82.6 82.7 87.5 144.5 79.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 158 O REMARK 620 2 GLY C 190 O 166.2 REMARK 620 3 GLY C 192 O 91.0 93.8 REMARK 620 4 ASP C 194 OD2 92.7 100.3 90.0 REMARK 620 5 HOH C 406 O 81.2 87.1 77.9 166.4 REMARK 620 6 HOH C 419 O 92.7 78.3 158.9 110.5 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 168 NE2 REMARK 620 2 ASP C 170 OD1 111.1 REMARK 620 3 HIS C 183 NE2 119.6 111.6 REMARK 620 4 HIS C 196 ND1 109.7 89.6 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 175 OD2 REMARK 620 2 GLY C 176 O 89.8 REMARK 620 3 GLY C 178 O 83.9 82.2 REMARK 620 4 ILE C 180 O 89.1 169.7 87.5 REMARK 620 5 ASP C 198 OD1 87.4 88.3 167.1 101.9 REMARK 620 6 GLU C 201 OE2 164.0 89.4 80.1 88.8 108.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 218 NE2 REMARK 620 2 HIS C 222 NE2 102.0 REMARK 620 3 HIS C 228 NE2 109.7 102.0 REMARK 620 4 ASP D 64 OD1 131.3 116.6 90.9 REMARK 620 5 ASP D 64 OD2 92.5 93.1 149.6 58.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8B2M RELATED DB: PDB DBREF 8B2N A 106 263 UNP P39900 MMP12_HUMAN 106 263 DBREF1 8B2N B 24 118 UNP A0A2A6E6U9_TANFO DBREF2 8B2N B A0A2A6E6U9 24 118 DBREF 8B2N C 106 263 UNP P39900 MMP12_HUMAN 106 263 DBREF1 8B2N D 24 118 UNP A0A2A6E6U9_TANFO DBREF2 8B2N D A0A2A6E6U9 24 118 SEQADV 8B2N ASP A 171 UNP P39900 PHE 171 ENGINEERED MUTATION SEQADV 8B2N ASP C 171 UNP P39900 PHE 171 ENGINEERED MUTATION SEQRES 1 A 158 GLY PRO VAL TRP ARG LYS HIS TYR ILE THR TYR ARG ILE SEQRES 2 A 158 ASN ASN TYR THR PRO ASP MET ASN ARG GLU ASP VAL ASP SEQRES 3 A 158 TYR ALA ILE ARG LYS ALA PHE GLN VAL TRP SER ASN VAL SEQRES 4 A 158 THR PRO LEU LYS PHE SER LYS ILE ASN THR GLY MET ALA SEQRES 5 A 158 ASP ILE LEU VAL VAL PHE ALA ARG GLY ALA HIS GLY ASP SEQRES 6 A 158 ASP HIS ALA PHE ASP GLY LYS GLY GLY ILE LEU ALA HIS SEQRES 7 A 158 ALA PHE GLY PRO GLY SER GLY ILE GLY GLY ASP ALA HIS SEQRES 8 A 158 PHE ASP GLU ASP GLU PHE TRP THR THR HIS SER GLY GLY SEQRES 9 A 158 THR ASN LEU PHE LEU THR ALA VAL HIS GLU ILE GLY HIS SEQRES 10 A 158 SER LEU GLY LEU GLY HIS SER SER ASP PRO LYS ALA VAL SEQRES 11 A 158 MET PHE PRO THR TYR LYS TYR VAL ASP ILE ASN THR PHE SEQRES 12 A 158 ARG LEU SER ALA ASP ASP ILE ARG GLY ILE GLN SER LEU SEQRES 13 A 158 TYR GLY SEQRES 1 B 95 ASP GLN SER SER CYS CYS ASP LYS GLU ILE ILE LYS ASP SEQRES 2 B 95 VAL SER GLU LEU THR GLY ILE ILE SER TYR ASN THR GLU SEQRES 3 B 95 VAL LYS ARG TRP TYR ILE SER VAL SER ASP ALA ASN SER SEQRES 4 B 95 TYR ASP ASN VAL THR LEU TYR PHE PRO CYS ASN LEU ASP SEQRES 5 B 95 SER LYS TYR MET LYS GLU LYS GLU LYS VAL ILE PHE SER SEQRES 6 B 95 GLY GLN ILE SER LYS SER THR LEU LYS ILE THR LEU PRO SEQRES 7 B 95 ALA GLY THR THR SER TYR CYS ILE ASN LEU MET SER ILE SEQRES 8 B 95 ASN LYS ILE ASN SEQRES 1 C 158 GLY PRO VAL TRP ARG LYS HIS TYR ILE THR TYR ARG ILE SEQRES 2 C 158 ASN ASN TYR THR PRO ASP MET ASN ARG GLU ASP VAL ASP SEQRES 3 C 158 TYR ALA ILE ARG LYS ALA PHE GLN VAL TRP SER ASN VAL SEQRES 4 C 158 THR PRO LEU LYS PHE SER LYS ILE ASN THR GLY MET ALA SEQRES 5 C 158 ASP ILE LEU VAL VAL PHE ALA ARG GLY ALA HIS GLY ASP SEQRES 6 C 158 ASP HIS ALA PHE ASP GLY LYS GLY GLY ILE LEU ALA HIS SEQRES 7 C 158 ALA PHE GLY PRO GLY SER GLY ILE GLY GLY ASP ALA HIS SEQRES 8 C 158 PHE ASP GLU ASP GLU PHE TRP THR THR HIS SER GLY GLY SEQRES 9 C 158 THR ASN LEU PHE LEU THR ALA VAL HIS GLU ILE GLY HIS SEQRES 10 C 158 SER LEU GLY LEU GLY HIS SER SER ASP PRO LYS ALA VAL SEQRES 11 C 158 MET PHE PRO THR TYR LYS TYR VAL ASP ILE ASN THR PHE SEQRES 12 C 158 ARG LEU SER ALA ASP ASP ILE ARG GLY ILE GLN SER LEU SEQRES 13 C 158 TYR GLY SEQRES 1 D 95 ASP GLN SER SER CYS CYS ASP LYS GLU ILE ILE LYS ASP SEQRES 2 D 95 VAL SER GLU LEU THR GLY ILE ILE SER TYR ASN THR GLU SEQRES 3 D 95 VAL LYS ARG TRP TYR ILE SER VAL SER ASP ALA ASN SER SEQRES 4 D 95 TYR ASP ASN VAL THR LEU TYR PHE PRO CYS ASN LEU ASP SEQRES 5 D 95 SER LYS TYR MET LYS GLU LYS GLU LYS VAL ILE PHE SER SEQRES 6 D 95 GLY GLN ILE SER LYS SER THR LEU LYS ILE THR LEU PRO SEQRES 7 D 95 ALA GLY THR THR SER TYR CYS ILE ASN LEU MET SER ILE SEQRES 8 D 95 ASN LYS ILE ASN HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET CA C 301 1 HET CA C 302 1 HET CA C 303 1 HET ZN C 304 1 HET ZN C 305 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 5 CA 6(CA 2+) FORMUL 8 ZN 4(ZN 2+) FORMUL 15 HOH *276(H2 O) HELIX 1 AA1 ASN A 126 ASN A 143 1 18 HELIX 2 AA2 LEU A 212 LEU A 224 1 13 HELIX 3 AA3 SER A 251 GLY A 263 1 13 HELIX 4 AA4 ASP B 75 MET B 79 5 5 HELIX 5 AA5 ASN C 126 ASN C 143 1 18 HELIX 6 AA6 ASN C 211 LEU C 224 1 14 HELIX 7 AA7 SER C 251 GLY C 263 1 13 HELIX 8 AA8 ASP D 75 MET D 79 5 5 SHEET 1 AA1 5 LYS A 148 LYS A 151 0 SHEET 2 AA1 5 TYR A 113 ILE A 118 1 N ILE A 114 O LYS A 148 SHEET 3 AA1 5 ILE A 159 ALA A 164 1 O VAL A 161 N ARG A 117 SHEET 4 AA1 5 ALA A 195 ASP A 198 1 O PHE A 197 N VAL A 162 SHEET 5 AA1 5 ALA A 182 ALA A 184 -1 N HIS A 183 O HIS A 196 SHEET 1 AA2 2 TRP A 203 THR A 204 0 SHEET 2 AA2 2 THR A 210 ASN A 211 1 O THR A 210 N THR A 204 SHEET 1 AA3 6 ILE B 33 ASN B 47 0 SHEET 2 AA3 6 ARG B 52 SER B 58 -1 O ARG B 52 N ASN B 47 SHEET 3 AA3 6 VAL B 66 PRO B 71 -1 O TYR B 69 N ILE B 55 SHEET 4 AA3 6 THR B 104 LYS B 116 1 O TYR B 107 N PHE B 70 SHEET 5 AA3 6 LYS B 84 LYS B 93 -1 N SER B 88 O MET B 112 SHEET 6 AA3 6 ILE B 33 ASN B 47 -1 N VAL B 37 O GLY B 89 SHEET 1 AA4 5 LYS C 148 LYS C 151 0 SHEET 2 AA4 5 TYR C 113 ILE C 118 1 N ILE C 114 O LYS C 148 SHEET 3 AA4 5 ILE C 159 ALA C 164 1 O VAL C 161 N ARG C 117 SHEET 4 AA4 5 ALA C 195 ASP C 198 1 O PHE C 197 N ALA C 164 SHEET 5 AA4 5 ALA C 182 ALA C 184 -1 N HIS C 183 O HIS C 196 SHEET 1 AA5 6 ILE D 33 ASN D 47 0 SHEET 2 AA5 6 ARG D 52 SER D 58 -1 O ARG D 52 N ASN D 47 SHEET 3 AA5 6 VAL D 66 PRO D 71 -1 O TYR D 69 N ILE D 55 SHEET 4 AA5 6 THR D 104 LYS D 116 1 O TYR D 107 N PHE D 70 SHEET 5 AA5 6 LYS D 84 LYS D 93 -1 N SER D 88 O MET D 112 SHEET 6 AA5 6 ILE D 33 ASN D 47 -1 N VAL D 37 O GLY D 89 SSBOND 1 CYS B 28 CYS B 72 1555 1555 2.02 SSBOND 2 CYS B 29 CYS B 108 1555 1555 2.04 SSBOND 3 CYS D 28 CYS D 72 1555 1555 2.03 SSBOND 4 CYS D 29 CYS D 108 1555 1555 2.05 LINK OD1 ASP A 124 CA CA A 301 1555 1555 2.40 LINK OD2 ASP A 124 CA CA A 301 1555 1555 2.67 LINK O ASP A 158 CA CA A 302 1555 1555 2.39 LINK NE2 HIS A 168 ZN ZN A 304 1555 1555 2.08 LINK OD1 ASP A 170 ZN ZN A 304 1555 1555 2.08 LINK OD2 ASP A 175 CA CA A 303 1555 1555 2.40 LINK O GLY A 176 CA CA A 303 1555 1555 2.39 LINK O GLY A 178 CA CA A 303 1555 1555 2.39 LINK O ILE A 180 CA CA A 303 1555 1555 2.40 LINK NE2 HIS A 183 ZN ZN A 304 1555 1555 2.09 LINK O GLY A 190 CA CA A 302 1555 1555 2.40 LINK O GLY A 192 CA CA A 302 1555 1555 2.39 LINK OD2 ASP A 194 CA CA A 302 1555 1555 2.40 LINK ND1 HIS A 196 ZN ZN A 304 1555 1555 2.09 LINK OD1 ASP A 198 CA CA A 303 1555 1555 2.40 LINK O GLU A 199 CA CA A 301 1555 1555 2.40 LINK OE2 GLU A 199 CA CA A 301 1555 1555 2.39 LINK O GLU A 201 CA CA A 301 1555 1555 2.41 LINK OE2 GLU A 201 CA CA A 303 1555 1555 2.39 LINK NE2 HIS A 218 ZN ZN A 305 1555 1555 2.08 LINK NE2 HIS A 222 ZN ZN A 305 1555 1555 2.08 LINK NE2 HIS A 228 ZN ZN A 305 1555 1555 2.09 LINK CA CA A 301 O HOH A 475 1555 1555 2.40 LINK CA CA A 301 O HOH A 479 1555 1555 2.41 LINK CA CA A 302 O HOH A 413 1555 1555 2.39 LINK CA CA A 302 O HOH A 427 1555 1555 2.40 LINK ZN ZN A 305 OD1 ASP B 64 1555 1555 2.09 LINK ZN ZN A 305 OD2 ASP B 64 1555 1555 2.43 LINK OD1 ASP C 124 CA CA C 301 1555 1555 2.40 LINK OD2 ASP C 124 CA CA C 301 1555 1555 2.66 LINK O ASP C 158 CA CA C 302 1555 1555 2.39 LINK NE2 HIS C 168 ZN ZN C 304 1555 1555 2.10 LINK OD1 ASP C 170 ZN ZN C 304 1555 1555 2.07 LINK OD2 ASP C 175 CA CA C 303 1555 1555 2.40 LINK O GLY C 176 CA CA C 303 1555 1555 2.40 LINK O GLY C 178 CA CA C 303 1555 1555 2.40 LINK O ILE C 180 CA CA C 303 1555 1555 2.39 LINK NE2 HIS C 183 ZN ZN C 304 1555 1555 2.07 LINK O GLY C 190 CA CA C 302 1555 1555 2.39 LINK O GLY C 192 CA CA C 302 1555 1555 2.41 LINK OD2 ASP C 194 CA CA C 302 1555 1555 2.40 LINK ND1 HIS C 196 ZN ZN C 304 1555 1555 2.08 LINK OD1 ASP C 198 CA CA C 303 1555 1555 2.39 LINK O GLU C 199 CA CA C 301 1555 1555 2.40 LINK OE2 GLU C 199 CA CA C 301 1555 1555 2.40 LINK O GLU C 201 CA CA C 301 1555 1555 2.41 LINK OE2 GLU C 201 CA CA C 303 1555 1555 2.39 LINK NE2 HIS C 218 ZN ZN C 305 1555 1555 2.08 LINK NE2 HIS C 222 ZN ZN C 305 1555 1555 2.09 LINK NE2 HIS C 228 ZN ZN C 305 1555 1555 2.09 LINK CA CA C 301 O HOH C 450 1555 1555 2.40 LINK CA CA C 301 O HOH C 463 1555 1555 2.40 LINK CA CA C 302 O HOH C 406 1555 1555 2.40 LINK CA CA C 302 O HOH C 419 1555 1555 2.40 LINK ZN ZN C 305 OD1 ASP D 64 1555 1555 2.11 LINK ZN ZN C 305 OD2 ASP D 64 1555 1555 2.37 CRYST1 54.410 63.000 135.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018379 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007387 0.00000