HEADER ANTIFUNGAL PROTEIN 14-SEP-22 8B2R TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PROTEIN AVR-PIKF TITLE 2 WITH A RICE (ORYZA SATIVA) RGA5 HMA DOMAIN MUTANT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISEASE RESISTANCE PROTEIN RGA5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OS11GRGA5,SASRGA5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AVR-PIK PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: AVR-PIK PROTEIN ( PIKMPROTEIN,PIKP PROTEIN ),AVRPI7 PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: ASIAN CULTIVATED RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: RGA5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 10 ORGANISM_TAXID: 318829; SOURCE 11 GENE: AVR-PIK, AVRPIK, PIKM, PIKP; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEAVY-METAL ASSOCIATED DOMAIN, PLANT IMMUNITY, FUNGAL PATHOGEN, KEYWDS 2 MAGNAPORTHE ORYZAE, RICE BLAST, RICE, NLR, MAX EFFECTOR, ANTIFUNGAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.BENTHAM,M.J.BANFIELD REVDAT 4 31-JAN-24 8B2R 1 REMARK REVDAT 3 11-OCT-23 8B2R 1 JRNL REVDAT 2 02-AUG-23 8B2R 1 JRNL REVDAT 1 19-OCT-22 8B2R 0 JRNL AUTH A.R.BENTHAM,J.C.DE LA CONCEPCION,J.V.BENJUMEA,J.KOURELIS, JRNL AUTH 2 S.JONES,M.MENDEL,J.STUBBS,C.E.M.STEVENSON,J.H.R.MAIDMENT, JRNL AUTH 3 M.YOULES,R.ZDRZALEK,S.KAMOUN,M.J.BANFIELD JRNL TITL ALLELIC COMPATIBILITY IN PLANT IMMUNE RECEPTORS FACILITATES JRNL TITL 2 ENGINEERING OF NEW EFFECTOR RECOGNITION SPECIFICITIES. JRNL REF PLANT CELL V. 35 3809 2023 JRNL REFN ESSN 1532-298X JRNL PMID 37486356 JRNL DOI 10.1093/PLCELL/KOAD204 REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 42836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.961 REMARK 3 FREE R VALUE TEST SET COUNT : 2125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2781 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.95500 REMARK 3 B22 (A**2) : 0.58200 REMARK 3 B33 (A**2) : 1.37300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.294 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1364 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1277 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1846 ; 1.808 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2992 ; 0.614 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 173 ; 6.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 9.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;13.677 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 196 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1570 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 262 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 200 ; 0.286 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 49 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 646 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.289 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 675 ; 2.207 ; 1.108 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 675 ; 2.207 ; 1.107 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 846 ; 2.644 ; 1.669 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 847 ; 2.642 ; 1.670 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 689 ; 3.575 ; 1.396 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 690 ; 3.573 ; 1.395 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 997 ; 3.984 ; 1.995 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 998 ; 3.982 ; 1.995 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2641 ; 5.437 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 994 A 1272 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3203 -1.0959 -16.6194 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.0174 REMARK 3 T33: 0.0037 T12: -0.0020 REMARK 3 T13: -0.0003 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.1581 L22: 1.9644 REMARK 3 L33: 1.4056 L12: 0.2991 REMARK 3 L13: -0.1351 L23: -0.4853 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.1188 S13: 0.0291 REMARK 3 S21: -0.1265 S22: -0.0121 S23: -0.0595 REMARK 3 S31: -0.0435 S32: 0.0512 S33: 0.0311 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 2.1982 -0.3647 -0.3070 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0121 REMARK 3 T33: 0.0117 T12: -0.0044 REMARK 3 T13: 0.0026 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.5849 L22: 1.2944 REMARK 3 L33: 1.6564 L12: -0.1306 REMARK 3 L13: -0.3377 L23: 0.6836 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.1223 S13: 0.1249 REMARK 3 S21: 0.0151 S22: 0.0178 S23: 0.0257 REMARK 3 S31: -0.1072 S32: 0.0135 S33: -0.0315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8B2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 46.242 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.71900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7B1I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5 25% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.95300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.32850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.94800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.32850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.95300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.94800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 999 O HOH A 1201 1.36 REMARK 500 HZ3 LYS A 999 O HOH A 1201 1.36 REMARK 500 HA3 GLY A 1059 O HOH A 1247 1.48 REMARK 500 NZ LYS A 999 O HOH A 1201 1.55 REMARK 500 O HOH A 1212 O HOH A 1258 1.78 REMARK 500 O HOH A 1217 O HOH A 1260 1.83 REMARK 500 CA GLY A 1059 O HOH A 1247 1.87 REMARK 500 O CYS A 1058 O HOH A 1202 1.87 REMARK 500 O HOH A 1203 O HOH A 1262 2.06 REMARK 500 O HOH B 326 O HOH B 382 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 308 O HOH B 392 1455 1.73 REMARK 500 O HOH A 1258 O HOH B 405 1655 1.98 REMARK 500 O CYS A 1058 O HOH A 1242 3654 2.03 REMARK 500 O HOH A 1231 O HOH A 1260 3644 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1037 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A1049 CG - CD - NE ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG A1055 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 31 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A1006 69.80 -156.95 REMARK 500 TRP B 74 -148.22 -153.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1055 0.12 SIDE CHAIN REMARK 500 ARG B 31 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8B2R A 997 1071 UNP F7J0N2 RGA5R_ORYSJ 997 1071 DBREF 8B2R B 31 113 UNP C4B8B8 C4B8B8_MAGOR 31 113 SEQADV 8B2R GLY A 994 UNP F7J0N2 EXPRESSION TAG SEQADV 8B2R PRO A 995 UNP F7J0N2 EXPRESSION TAG SEQADV 8B2R MET A 996 UNP F7J0N2 EXPRESSION TAG SEQADV 8B2R ASP A 1033 UNP F7J0N2 GLU 1033 VARIANT SEQADV 8B2R GLN A 1039 UNP F7J0N2 VAL 1039 VARIANT SEQADV 8B2R GLN A 1065 UNP F7J0N2 MET 1065 VARIANT SEQADV 8B2R GLU A 1068 UNP F7J0N2 LEU 1068 VARIANT SEQADV 8B2R LYS A 1070 UNP F7J0N2 GLU 1070 VARIANT SEQADV 8B2R GLU A 1071 UNP F7J0N2 LYS 1071 VARIANT SEQADV 8B2R GLY B 28 UNP C4B8B8 EXPRESSION TAG SEQADV 8B2R PRO B 29 UNP C4B8B8 EXPRESSION TAG SEQADV 8B2R MET B 30 UNP C4B8B8 EXPRESSION TAG SEQADV 8B2R ASN B 46 UNP C4B8B8 HIS 46 VARIANT SEQADV 8B2R ALA B 47 UNP C4B8B8 PRO 47 VARIANT SEQADV 8B2R ASP B 48 UNP C4B8B8 GLY 48 VARIANT SEQADV 8B2R LYS B 78 UNP C4B8B8 MET 78 VARIANT SEQRES 1 A 78 GLY PRO MET ARG THR LYS ILE VAL VAL LYS VAL HIS MET SEQRES 2 A 78 PRO CYS GLY LYS SER ARG ALA LYS ALA MET ALA LEU ALA SEQRES 3 A 78 ALA SER VAL ASN GLY VAL ASP SER VAL GLU ILE THR GLY SEQRES 4 A 78 ASP ASP LYS ASP ARG LEU GLN VAL VAL GLY ARG GLY ILE SEQRES 5 A 78 ASP PRO VAL ARG LEU VAL ALA LEU LEU ARG GLU LYS CYS SEQRES 6 A 78 GLY LEU ALA GLU LEU LEU GLN VAL GLU GLU VAL LYS GLU SEQRES 1 B 86 GLY PRO MET ARG ALA ILE ASP LEU SER ARG GLU ARG ASP SEQRES 2 B 86 PRO ASN PHE PHE ASP ASN ALA ASP ILE PRO VAL PRO GLU SEQRES 3 B 86 CYS PHE TRP PHE MET PHE LYS ASN ASN VAL ARG GLN ASP SEQRES 4 B 86 ALA GLY THR CYS TYR SER SER TRP LYS MET ASP LYS LYS SEQRES 5 B 86 VAL GLY PRO ASN TRP VAL HIS ILE LYS SER ASP ASP ASN SEQRES 6 B 86 CYS ASN LEU SER GLY ASP PHE PRO PRO GLY TRP ILE VAL SEQRES 7 B 86 LEU GLY LYS LYS ARG PRO GLY PHE HET SO4 A1101 5 HET CL A1102 1 HET EDO A1103 10 HET CL B 201 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 O4 S 2- FORMUL 4 CL 2(CL 1-) FORMUL 5 EDO C2 H6 O2 FORMUL 7 HOH *180(H2 O) HELIX 1 AA1 CYS A 1008 VAL A 1022 1 15 HELIX 2 AA2 ASP A 1046 GLY A 1059 1 14 HELIX 3 AA3 ASP B 34 GLU B 38 5 5 SHEET 1 AA1 7 VAL A1025 THR A1031 0 SHEET 2 AA1 7 ARG A1037 ARG A1043 -1 O GLN A1039 N GLU A1029 SHEET 3 AA1 7 ARG A 997 VAL A1004 -1 N ILE A1000 O VAL A1040 SHEET 4 AA1 7 ALA A1061 GLU A1068 -1 O GLU A1067 N LYS A 999 SHEET 5 AA1 7 TRP B 74 VAL B 80 -1 O ASP B 77 N VAL A1066 SHEET 6 AA1 7 ASN B 83 SER B 89 -1 O ILE B 87 N MET B 76 SHEET 7 AA1 7 LEU B 95 SER B 96 -1 O SER B 96 N LYS B 88 SHEET 1 AA2 3 VAL B 63 CYS B 70 0 SHEET 2 AA2 3 CYS B 54 LYS B 60 -1 N MET B 58 O GLN B 65 SHEET 3 AA2 3 TRP B 103 LYS B 109 -1 O LYS B 108 N PHE B 55 SSBOND 1 CYS B 54 CYS B 93 1555 1555 2.09 CISPEP 1 GLY B 28 PRO B 29 0 -5.20 CRYST1 31.906 57.896 76.657 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013045 0.00000