HEADER HYDROLASE 14-SEP-22 8B2S TITLE GH24 FAMILY MURAMIDASE FROM TRICHOPHAEA SACCATA WITH AN SH3-LIKE CELL TITLE 2 WALL BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH24 FAMILY MURAMIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOPHAEA SACCATA; SOURCE 3 ORGANISM_TAXID: 223377; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS SH3-LIKE, MURAMIDASE, PEPTIDOGLYCAN, CELL WALL BINDING DOMAIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.BLAGOVA,A.A.LEBEDEV,L.K.SKOV,R.A.PACHE,K.M.SCHNORR, AUTHOR 2 L.KIEMER,S.NYMAND-GRARUP,L.MING,L.YE,M.KLAUSEN,M.T.COHN, AUTHOR 3 E.G.W.SCHMIDT,G.J.DAVIES,K.S.WILSON REVDAT 4 09-OCT-24 8B2S 1 REMARK REVDAT 3 07-FEB-24 8B2S 1 REMARK REVDAT 2 09-AUG-23 8B2S 1 JRNL REMARK REVDAT 1 19-JUL-23 8B2S 0 JRNL AUTH O.V.MOROZ,E.BLAGOVA,A.A.LEBEDEV,L.K.SKOV,R.A.PACHE, JRNL AUTH 2 K.M.SCHNORR,L.KIEMER,E.P.FRIIS,S.NYMAND-GRARUP,L.MING,L.YE, JRNL AUTH 3 M.KLAUSEN,M.T.COHN,E.G.W.SCHMIDT,G.J.DAVIES,K.S.WILSON JRNL TITL MODULE WALKING USING AN SH3-LIKE CELL-WALL-BINDING DOMAIN JRNL TITL 2 LEADS TO A NEW GH184 FAMILY OF MURAMIDASES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 706 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37428847 JRNL DOI 10.1107/S2059798323005004 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.027 REMARK 3 FREE R VALUE TEST SET COUNT : 2862 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12900 REMARK 3 B22 (A**2) : 0.12900 REMARK 3 B33 (A**2) : -0.41700 REMARK 3 B12 (A**2) : 0.06400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.569 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3758 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3369 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5118 ; 1.540 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7904 ; 0.536 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 6.212 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ; 6.594 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;12.278 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4233 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 699 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 704 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 87 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1884 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 279 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.401 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1927 ; 2.511 ; 3.074 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1927 ; 2.512 ; 3.074 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2409 ; 3.222 ; 4.594 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2410 ; 3.221 ; 4.595 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1831 ; 4.192 ; 3.395 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1832 ; 4.191 ; 3.396 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2708 ; 4.906 ; 4.936 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2709 ; 4.905 ; 4.937 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 245 NULL REMARK 3 1 A 1 A 245 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): -59.8220 -40.6680 26.2020 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0295 REMARK 3 T33: 0.1792 T12: 0.0146 REMARK 3 T13: -0.0594 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 3.1153 L22: 2.7222 REMARK 3 L33: 5.1139 L12: 0.3040 REMARK 3 L13: 0.8565 L23: 0.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: 0.0501 S13: -0.2965 REMARK 3 S21: -0.1353 S22: -0.0029 S23: 0.0237 REMARK 3 S31: 0.2919 S32: 0.1082 S33: -0.1222 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): -63.7490 -38.7230 -5.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: 0.0666 REMARK 3 T33: 0.0221 T12: -0.0220 REMARK 3 T13: 0.0036 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 3.0291 L22: 2.3079 REMARK 3 L33: 3.0128 L12: -0.4759 REMARK 3 L13: -0.6808 L23: 0.1549 REMARK 3 S TENSOR REMARK 3 S11: -0.1819 S12: -0.1360 S13: -0.0333 REMARK 3 S21: 0.1617 S22: 0.0232 S23: -0.1672 REMARK 3 S31: 0.2818 S32: 0.0660 S33: 0.1588 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -57.2840 -15.5540 27.9400 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.0336 REMARK 3 T33: 0.0459 T12: 0.0517 REMARK 3 T13: 0.0054 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.8704 L22: 3.4381 REMARK 3 L33: 4.5467 L12: 0.5845 REMARK 3 L13: -0.9023 L23: 0.3604 REMARK 3 S TENSOR REMARK 3 S11: 0.1364 S12: 0.1612 S13: 0.0450 REMARK 3 S21: -0.0663 S22: -0.1050 S23: 0.0940 REMARK 3 S31: -0.3164 S32: -0.3053 S33: -0.0315 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -61.7600 -16.3220 59.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0404 REMARK 3 T33: 0.0191 T12: -0.0162 REMARK 3 T13: 0.0023 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.2302 L22: 2.7696 REMARK 3 L33: 2.4801 L12: 0.5314 REMARK 3 L13: 0.4156 L23: -0.2331 REMARK 3 S TENSOR REMARK 3 S11: -0.1079 S12: 0.0796 S13: 0.0866 REMARK 3 S21: -0.1701 S22: 0.0082 S23: -0.0967 REMARK 3 S31: -0.2016 S32: -0.1275 S33: 0.0997 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8B2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292124526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56987 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 46.582 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 46.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.02900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 50.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1HDE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMSO4 SCREEN (QIAGEN), CONDITION C3: REMARK 280 0.2 M POTASSIUM FLUORIDE, 2.2 M AMMONIUM SULPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.41800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.83600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.83600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.41800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 SER B 74 REMARK 465 SER B 75 REMARK 465 SER B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 71 CE NZ REMARK 470 GLY A 73 C O REMARK 470 GLY A 79 N REMARK 470 LYS A 103 CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 LYS B 71 CE NZ REMARK 470 GLY B 73 C O REMARK 470 GLY B 79 N REMARK 470 LYS B 103 CE NZ REMARK 470 LYS B 126 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 10 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 10 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 223 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 129 30.38 -87.40 REMARK 500 PRO B 129 32.18 -87.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 155 O REMARK 620 2 ASN A 156 O 79.2 REMARK 620 3 VAL A 158 O 78.3 88.2 REMARK 620 4 ASP A 160 OD1 94.1 173.4 90.2 REMARK 620 5 HOH A 540 O 157.0 78.9 94.0 107.7 REMARK 620 6 HOH A 551 O 87.6 86.4 165.7 93.6 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 155 O REMARK 620 2 ASN B 156 O 81.5 REMARK 620 3 VAL B 158 O 75.9 90.0 REMARK 620 4 ASP B 160 OD1 88.4 168.8 91.9 REMARK 620 5 HOH B 531 O 159.1 77.8 101.3 112.5 REMARK 620 6 HOH B 540 O 93.0 84.3 168.2 91.7 87.7 REMARK 620 N 1 2 3 4 5 DBREF 8B2S A 1 245 PDB 8B2S 8B2S 1 245 DBREF 8B2S B 1 245 PDB 8B2S 8B2S 1 245 SEQRES 1 A 245 TYR PRO VAL LYS THR ASP LEU HIS CYS ARG SER SER PRO SEQRES 2 A 245 SER THR SER ALA SER ILE VAL ARG THR TYR SER SER GLY SEQRES 3 A 245 THR GLU VAL GLN ILE GLN CYS GLN THR THR GLY THR SER SEQRES 4 A 245 VAL GLN GLY SER ASN VAL TRP ASP LYS THR GLN HIS GLY SEQRES 5 A 245 CYS TYR VAL ALA ASP TYR TYR VAL LYS THR GLY HIS SER SEQRES 6 A 245 GLY ILE PHE THR THR LYS CYS GLY SER SER SER GLY GLY SEQRES 7 A 245 GLY SER CYS LYS PRO PRO PRO ILE ASN ALA ALA THR VAL SEQRES 8 A 245 ALA LEU ILE LYS GLU PHE GLU GLY PHE VAL PRO LYS PRO SEQRES 9 A 245 ALA PRO ASP PRO ILE GLY LEU PRO THR VAL GLY TYR GLY SEQRES 10 A 245 HIS LEU CYS LYS THR LYS GLY CYS LYS GLU VAL PRO TYR SEQRES 11 A 245 SER PHE PRO LEU THR GLN GLU THR ALA THR LYS LEU LEU SEQRES 12 A 245 GLN SER ASP ILE LYS THR PHE THR SER CYS VAL SER ASN SEQRES 13 A 245 TYR VAL LYS ASP SER VAL LYS LEU ASN ASP ASN GLN TYR SEQRES 14 A 245 GLY ALA LEU ALA SER TRP ALA PHE ASN VAL GLY CYS GLY SEQRES 15 A 245 ASN VAL GLN THR SER SER LEU ILE LYS ARG LEU ASN ALA SEQRES 16 A 245 GLY GLU ASN PRO ASN THR VAL ALA ALA GLN GLU LEU PRO SEQRES 17 A 245 LYS TRP LYS TYR ALA GLY GLY LYS VAL MET PRO GLY LEU SEQRES 18 A 245 VAL ARG ARG ARG ASN ALA GLU VAL ALA LEU PHE LYS LYS SEQRES 19 A 245 PRO SER SER VAL GLN ALA HIS PRO PRO LYS CYS SEQRES 1 B 245 TYR PRO VAL LYS THR ASP LEU HIS CYS ARG SER SER PRO SEQRES 2 B 245 SER THR SER ALA SER ILE VAL ARG THR TYR SER SER GLY SEQRES 3 B 245 THR GLU VAL GLN ILE GLN CYS GLN THR THR GLY THR SER SEQRES 4 B 245 VAL GLN GLY SER ASN VAL TRP ASP LYS THR GLN HIS GLY SEQRES 5 B 245 CYS TYR VAL ALA ASP TYR TYR VAL LYS THR GLY HIS SER SEQRES 6 B 245 GLY ILE PHE THR THR LYS CYS GLY SER SER SER GLY GLY SEQRES 7 B 245 GLY SER CYS LYS PRO PRO PRO ILE ASN ALA ALA THR VAL SEQRES 8 B 245 ALA LEU ILE LYS GLU PHE GLU GLY PHE VAL PRO LYS PRO SEQRES 9 B 245 ALA PRO ASP PRO ILE GLY LEU PRO THR VAL GLY TYR GLY SEQRES 10 B 245 HIS LEU CYS LYS THR LYS GLY CYS LYS GLU VAL PRO TYR SEQRES 11 B 245 SER PHE PRO LEU THR GLN GLU THR ALA THR LYS LEU LEU SEQRES 12 B 245 GLN SER ASP ILE LYS THR PHE THR SER CYS VAL SER ASN SEQRES 13 B 245 TYR VAL LYS ASP SER VAL LYS LEU ASN ASP ASN GLN TYR SEQRES 14 B 245 GLY ALA LEU ALA SER TRP ALA PHE ASN VAL GLY CYS GLY SEQRES 15 B 245 ASN VAL GLN THR SER SER LEU ILE LYS ARG LEU ASN ALA SEQRES 16 B 245 GLY GLU ASN PRO ASN THR VAL ALA ALA GLN GLU LEU PRO SEQRES 17 B 245 LYS TRP LYS TYR ALA GLY GLY LYS VAL MET PRO GLY LEU SEQRES 18 B 245 VAL ARG ARG ARG ASN ALA GLU VAL ALA LEU PHE LYS LYS SEQRES 19 B 245 PRO SER SER VAL GLN ALA HIS PRO PRO LYS CYS HET K A 301 1 HET K B 301 1 HETNAM K POTASSIUM ION FORMUL 3 K 2(K 1+) FORMUL 5 HOH *353(H2 O) HELIX 1 AA1 TYR A 58 VAL A 60 5 3 HELIX 2 AA2 ASN A 87 GLY A 99 1 13 HELIX 3 AA3 THR A 135 VAL A 158 1 24 HELIX 4 AA4 ASP A 166 GLY A 180 1 15 HELIX 5 AA5 GLY A 180 THR A 186 1 7 HELIX 6 AA6 SER A 187 ALA A 195 1 9 HELIX 7 AA7 ASN A 198 LEU A 207 1 10 HELIX 8 AA8 PRO A 208 TRP A 210 5 3 HELIX 9 AA9 MET A 218 LYS A 233 1 16 HELIX 10 AB1 TYR B 58 VAL B 60 5 3 HELIX 11 AB2 ASN B 87 GLY B 99 1 13 HELIX 12 AB3 THR B 135 VAL B 158 1 24 HELIX 13 AB4 ASP B 166 GLY B 180 1 15 HELIX 14 AB5 GLY B 180 THR B 186 1 7 HELIX 15 AB6 SER B 187 ALA B 195 1 9 HELIX 16 AB7 ASN B 198 LEU B 207 1 10 HELIX 17 AB8 PRO B 208 TRP B 210 5 3 HELIX 18 AB9 MET B 218 LYS B 233 1 16 SHEET 1 AA1 2 LEU A 7 ARG A 10 0 SHEET 2 AA1 2 ILE A 19 TYR A 23 -1 O ARG A 21 N CYS A 9 SHEET 1 AA2 3 CYS A 33 VAL A 40 0 SHEET 2 AA2 3 SER A 43 LYS A 48 -1 O LYS A 48 N CYS A 33 SHEET 3 AA2 3 TYR A 54 ALA A 56 -1 O VAL A 55 N ASP A 47 SHEET 1 AA3 2 THR A 113 VAL A 114 0 SHEET 2 AA3 2 HIS A 118 LEU A 119 -1 O HIS A 118 N VAL A 114 SHEET 1 AA4 2 LEU A 164 ASN A 165 0 SHEET 2 AA4 2 GLN A 239 HIS A 241 -1 O ALA A 240 N LEU A 164 SHEET 1 AA5 2 TYR A 212 ALA A 213 0 SHEET 2 AA5 2 LYS A 216 VAL A 217 -1 O LYS A 216 N ALA A 213 SHEET 1 AA6 2 LEU B 7 ARG B 10 0 SHEET 2 AA6 2 ILE B 19 TYR B 23 -1 O ARG B 21 N CYS B 9 SHEET 1 AA7 3 CYS B 33 VAL B 40 0 SHEET 2 AA7 3 SER B 43 LYS B 48 -1 O LYS B 48 N CYS B 33 SHEET 3 AA7 3 TYR B 54 ALA B 56 -1 O VAL B 55 N ASP B 47 SHEET 1 AA8 2 THR B 113 VAL B 114 0 SHEET 2 AA8 2 HIS B 118 LEU B 119 -1 O HIS B 118 N VAL B 114 SHEET 1 AA9 2 LEU B 164 ASN B 165 0 SHEET 2 AA9 2 GLN B 239 HIS B 241 -1 O ALA B 240 N LEU B 164 SHEET 1 AB1 2 TYR B 212 ALA B 213 0 SHEET 2 AB1 2 LYS B 216 VAL B 217 -1 O LYS B 216 N ALA B 213 SSBOND 1 CYS A 9 CYS A 53 1555 1555 2.09 SSBOND 2 CYS A 33 CYS A 72 1555 1555 2.12 SSBOND 3 CYS A 81 CYS A 245 1555 1555 2.08 SSBOND 4 CYS A 120 CYS A 125 1555 1555 2.05 SSBOND 5 CYS A 153 CYS A 181 1555 1555 2.24 SSBOND 6 CYS B 9 CYS B 53 1555 1555 2.11 SSBOND 7 CYS B 33 CYS B 72 1555 1555 2.14 SSBOND 8 CYS B 81 CYS B 245 1555 1555 2.07 SSBOND 9 CYS B 120 CYS B 125 1555 1555 2.05 SSBOND 10 CYS B 153 CYS B 181 1555 1555 2.30 LINK O SER A 155 K K A 301 1555 1555 2.69 LINK O ASN A 156 K K A 301 1555 1555 2.82 LINK O VAL A 158 K K A 301 1555 1555 2.68 LINK OD1 ASP A 160 K K A 301 1555 1555 2.80 LINK K K A 301 O HOH A 540 1555 1555 2.38 LINK K K A 301 O HOH A 551 1555 1555 2.48 LINK O SER B 155 K K B 301 1555 1555 2.66 LINK O ASN B 156 K K B 301 1555 1555 2.77 LINK O VAL B 158 K K B 301 1555 1555 2.66 LINK OD1 ASP B 160 K K B 301 1555 1555 2.75 LINK K K B 301 O HOH B 531 1555 1555 2.30 LINK K K B 301 O HOH B 540 1555 1555 2.42 CISPEP 1 PHE A 132 PRO A 133 0 -2.08 CISPEP 2 HIS A 241 PRO A 242 0 -10.60 CISPEP 3 PHE B 132 PRO B 133 0 -4.68 CISPEP 4 HIS B 241 PRO B 242 0 -8.95 CRYST1 99.438 99.438 133.254 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010057 0.005806 0.000000 0.00000 SCALE2 0.000000 0.011612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007504 0.00000