HEADER FLUORESCENT PROTEIN 15-SEP-22 8B2Y TITLE STRUCTURE OF THE WEAKLY RED FLUORESCENT PROTEIN CSIFP4 FROM CLYTIA TITLE 2 SIMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSIFP4 CHAIN A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLYTIA; SOURCE 3 ORGANISM_TAXID: 13436; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RED FLUORESCENT PROTEIN, CHROMOPHORE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.DEPERNET,S.ENGILBERGE,G.LAMBERT,G.GOTTHARD,N.SHANER,A.ROYANT REVDAT 2 15-NOV-23 8B2Y 1 LINK ATOM REVDAT 1 27-SEP-23 8B2Y 0 JRNL AUTH H.DEPERNET,S.ENGILBERGE,G.LAMBERT,G.GOTTHARD,N.SHANER, JRNL AUTH 2 A.ROYANT JRNL TITL STRUCTURE OF THE WEAKLY RED FLUORESCENT PROTEIN CSIFP4 FROM JRNL TITL 2 CLYTIA SIMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.3 REMARK 3 NUMBER OF REFLECTIONS : 56117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 91.4500 - 7.6700 0.99 3396 196 0.2046 0.2339 REMARK 3 2 7.6700 - 6.0900 1.00 3389 180 0.2219 0.2209 REMARK 3 3 6.0900 - 5.3200 1.00 3385 171 0.1950 0.2342 REMARK 3 4 5.3200 - 4.8300 1.00 3371 165 0.1735 0.1742 REMARK 3 5 4.8300 - 4.4900 1.00 3388 171 0.1585 0.1570 REMARK 3 6 4.4800 - 4.2200 1.00 3379 164 0.1622 0.2087 REMARK 3 7 4.2200 - 4.0100 1.00 3339 189 0.1986 0.1986 REMARK 3 8 4.0100 - 3.8300 0.99 3356 186 0.2123 0.2430 REMARK 3 9 3.8300 - 3.6900 1.00 3367 158 0.2119 0.2294 REMARK 3 10 3.6900 - 3.5600 1.00 3367 178 0.2298 0.2362 REMARK 3 11 3.5600 - 3.4500 1.00 3328 179 0.2376 0.2701 REMARK 3 12 3.4500 - 3.3500 1.00 3377 177 0.2468 0.2769 REMARK 3 13 3.3500 - 3.2600 1.00 3308 192 0.2472 0.2855 REMARK 3 14 3.2600 - 3.1800 0.94 3188 152 0.2705 0.3001 REMARK 3 15 3.1800 - 3.1100 0.76 2534 157 0.2886 0.2993 REMARK 3 16 3.1100 - 3.0400 0.53 1757 81 0.2889 0.3256 REMARK 3 17 3.0400 - 2.9800 0.33 1110 60 0.3030 0.3406 REMARK 3 18 2.9800 - 2.9300 0.19 624 28 0.3191 0.3360 REMARK 3 19 2.9300 - 2.8700 0.08 266 13 0.3230 0.3373 REMARK 3 20 2.8700 - 2.8300 0.03 86 5 0.3540 0.2316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 64.5255 -36.7250 32.8128 REMARK 3 T TENSOR REMARK 3 T11: 0.3441 T22: 0.3164 REMARK 3 T33: 0.2984 T12: -0.0240 REMARK 3 T13: 0.0553 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.5337 L22: 0.3934 REMARK 3 L33: 0.4229 L12: -0.0038 REMARK 3 L13: -0.0679 L23: 0.0712 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0605 S13: 0.0558 REMARK 3 S21: 0.0503 S22: 0.0282 S23: 0.0917 REMARK 3 S31: -0.0750 S32: -0.0285 S33: -0.0553 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 5 THROUGH 18 OR RESID REMARK 3 20 THROUGH 92 OR RESID 94 THROUGH 101 OR REMARK 3 RESID 103 THROUGH 104 OR RESID 106 REMARK 3 THROUGH 156 OR RESID 158 THROUGH 169 OR REMARK 3 RESID 172 THROUGH 175 OR RESID 177 REMARK 3 THROUGH 203 OR RESID 205 OR RESID 207 REMARK 3 THROUGH 227 OR RESID 229 THROUGH 235)) REMARK 3 SELECTION : (CHAIN B AND (RESID 5 THROUGH 10 OR REMARK 3 (RESID 11 THROUGH 12 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 13 THROUGH 18 OR RESID 20 THROUGH REMARK 3 92 OR RESID 94 THROUGH 101 OR RESID 103 REMARK 3 THROUGH 104 OR RESID 106 THROUGH 156 OR REMARK 3 RESID 158 THROUGH 169 OR RESID 172 REMARK 3 THROUGH 175 OR RESID 177 THROUGH 203 OR REMARK 3 RESID 205 OR RESID 207 THROUGH 227 OR REMARK 3 RESID 229 THROUGH 235)) REMARK 3 ATOM PAIRS NUMBER : 4133 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 5 THROUGH 18 OR RESID REMARK 3 20 THROUGH 92 OR RESID 94 THROUGH 101 OR REMARK 3 RESID 103 THROUGH 104 OR RESID 106 REMARK 3 THROUGH 156 OR RESID 158 THROUGH 169 OR REMARK 3 RESID 172 THROUGH 175 OR RESID 177 REMARK 3 THROUGH 203 OR RESID 205 OR RESID 207 REMARK 3 THROUGH 227 OR RESID 229 THROUGH 235)) REMARK 3 SELECTION : (CHAIN C AND (RESID 5 THROUGH 10 OR REMARK 3 (RESID 11 THROUGH 12 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 13 THROUGH 18 OR RESID 20 THROUGH REMARK 3 92 OR RESID 94 THROUGH 101 OR RESID 103 REMARK 3 THROUGH 104 OR RESID 106 THROUGH 156 OR REMARK 3 RESID 158 THROUGH 169 OR RESID 172 REMARK 3 THROUGH 175 OR RESID 177 THROUGH 203 OR REMARK 3 RESID 205 OR RESID 207 THROUGH 227 OR REMARK 3 RESID 229 THROUGH 235)) REMARK 3 ATOM PAIRS NUMBER : 4133 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 5 THROUGH 18 OR RESID REMARK 3 20 THROUGH 92 OR RESID 94 THROUGH 101 OR REMARK 3 RESID 103 THROUGH 104 OR RESID 106 REMARK 3 THROUGH 156 OR RESID 158 THROUGH 169 OR REMARK 3 RESID 172 THROUGH 175 OR RESID 177 REMARK 3 THROUGH 203 OR RESID 205 OR RESID 207 REMARK 3 THROUGH 227 OR RESID 229 THROUGH 235)) REMARK 3 SELECTION : (CHAIN D AND (RESID 5 THROUGH 10 OR REMARK 3 (RESID 11 THROUGH 12 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 13 THROUGH 18 OR RESID 20 THROUGH REMARK 3 92 OR RESID 94 THROUGH 101 OR RESID 103 REMARK 3 THROUGH 104 OR RESID 106 THROUGH 156 OR REMARK 3 RESID 158 THROUGH 169 OR RESID 172 REMARK 3 THROUGH 175 OR RESID 177 THROUGH 203 OR REMARK 3 RESID 205 OR RESID 207 THROUGH 227 OR REMARK 3 RESID 229 THROUGH 235)) REMARK 3 ATOM PAIRS NUMBER : 4133 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 91.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2HPW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M LITHIUM SULFATE, 0.1M TRIS PH 8.5 REMARK 280 AND 0.01M NICKEL CHLORIDE., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.91333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.95667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.93500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.97833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 129.89167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 MET D 3 REMARK 465 ASN D 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 138 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 156 -126.42 59.35 REMARK 500 ASP A 156 -126.29 59.35 REMARK 500 ASP A 188 33.14 -86.31 REMARK 500 LYS A 232 45.49 -95.56 REMARK 500 SER B 7 2.74 -67.23 REMARK 500 ASP B 156 -128.77 58.50 REMARK 500 LYS B 232 37.31 -95.87 REMARK 500 ASP C 156 -124.99 58.50 REMARK 500 LYS C 232 38.52 -94.82 REMARK 500 ASP D 156 -123.55 58.54 REMARK 500 ASN D 171 59.66 -106.90 REMARK 500 ASN D 171 57.17 -104.14 REMARK 500 LYS D 232 40.32 -96.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 477 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH C 479 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH D 461 DISTANCE = 6.76 ANGSTROMS DBREF 8B2Y A 1 235 PDB 8B2Y 8B2Y 1 235 DBREF 8B2Y B 1 235 PDB 8B2Y 8B2Y 1 235 DBREF 8B2Y C 1 235 PDB 8B2Y 8B2Y 1 235 DBREF 8B2Y D 1 235 PDB 8B2Y 8B2Y 1 235 SEQRES 1 A 233 MET ASN MET ASN ILE GLY SER VAL VAL PHE GLN LYS PRO SEQRES 2 A 233 ILE PRO PHE VAL VAL GLN PHE GLU GLY ASP ILE ASN GLY SEQRES 3 A 233 LYS LYS PHE SER VAL ALA GLY LYS GLY ILE GLY ASP ALA SEQRES 4 A 233 ASN SER GLY LYS PHE GLU GLY LYS HIS ILE CYS THR THR SEQRES 5 A 233 GLY ASP LEU PRO ILE SER TRP GLY ALA ILE ALA CYS LEU SEQRES 6 A 233 LEU CRQ MET PRO CYS PHE ALA LYS TYR PRO ASN ASP VAL SEQRES 7 A 233 PRO ASP TYR ILE LYS SER THR PHE PRO GLU GLY PHE GLN SEQRES 8 A 233 ARG GLU SER LEU VAL GLU PHE GLY ASN ASP GLY ARG TYR SEQRES 9 A 233 ILE ALA LYS GLN LYS VAL THR LEU GLU ASN GLY ILE ILE SEQRES 10 A 233 TYR ASN ARG GLY THR ILE THR GLY ASP GLY PHE ASN GLU SEQRES 11 A 233 ASN GLY LYS ILE MET ARG ARG GLU LEU GLN ASP LYS VAL SEQRES 12 A 233 ALA PRO MET LEU THR TYR TYR TYR PRO GLU ASP ASP GLY SEQRES 13 A 233 LEU LYS CYS ILE PHE ASN GLN LEU ILE ASN GLY ASN ASN SEQRES 14 A 233 GLU ASP PHE GLN GLU VAL LYS MET SER GLN LYS ILE THR SEQRES 15 A 233 PRO LEU SER ASP GLY PRO THR ALA PRO ARG LYS LEU HIS SEQRES 16 A 233 TYR GLN HIS ILE THR LEU ASP LEU ARG LYS ASP SER SER SEQRES 17 A 233 GLU ALA ALA ASP HIS ILE VAL ILE THR GLU ASN ALA LYS SEQRES 18 A 233 ALA VAL SER ALA GLU LYS TYR ALA LYS ALA CYS PHE SEQRES 1 B 233 MET ASN MET ASN ILE GLY SER VAL VAL PHE GLN LYS PRO SEQRES 2 B 233 ILE PRO PHE VAL VAL GLN PHE GLU GLY ASP ILE ASN GLY SEQRES 3 B 233 LYS LYS PHE SER VAL ALA GLY LYS GLY ILE GLY ASP ALA SEQRES 4 B 233 ASN SER GLY LYS PHE GLU GLY LYS HIS ILE CYS THR THR SEQRES 5 B 233 GLY ASP LEU PRO ILE SER TRP GLY ALA ILE ALA CYS LEU SEQRES 6 B 233 LEU CRQ MET PRO CYS PHE ALA LYS TYR PRO ASN ASP VAL SEQRES 7 B 233 PRO ASP TYR ILE LYS SER THR PHE PRO GLU GLY PHE GLN SEQRES 8 B 233 ARG GLU SER LEU VAL GLU PHE GLY ASN ASP GLY ARG TYR SEQRES 9 B 233 ILE ALA LYS GLN LYS VAL THR LEU GLU ASN GLY ILE ILE SEQRES 10 B 233 TYR ASN ARG GLY THR ILE THR GLY ASP GLY PHE ASN GLU SEQRES 11 B 233 ASN GLY LYS ILE MET ARG ARG GLU LEU GLN ASP LYS VAL SEQRES 12 B 233 ALA PRO MET LEU THR TYR TYR TYR PRO GLU ASP ASP GLY SEQRES 13 B 233 LEU LYS CYS ILE PHE ASN GLN LEU ILE ASN GLY ASN ASN SEQRES 14 B 233 GLU ASP PHE GLN GLU VAL LYS MET SER GLN LYS ILE THR SEQRES 15 B 233 PRO LEU SER ASP GLY PRO THR ALA PRO ARG LYS LEU HIS SEQRES 16 B 233 TYR GLN HIS ILE THR LEU ASP LEU ARG LYS ASP SER SER SEQRES 17 B 233 GLU ALA ALA ASP HIS ILE VAL ILE THR GLU ASN ALA LYS SEQRES 18 B 233 ALA VAL SER ALA GLU LYS TYR ALA LYS ALA CYS PHE SEQRES 1 C 233 MET ASN MET ASN ILE GLY SER VAL VAL PHE GLN LYS PRO SEQRES 2 C 233 ILE PRO PHE VAL VAL GLN PHE GLU GLY ASP ILE ASN GLY SEQRES 3 C 233 LYS LYS PHE SER VAL ALA GLY LYS GLY ILE GLY ASP ALA SEQRES 4 C 233 ASN SER GLY LYS PHE GLU GLY LYS HIS ILE CYS THR THR SEQRES 5 C 233 GLY ASP LEU PRO ILE SER TRP GLY ALA ILE ALA CYS LEU SEQRES 6 C 233 LEU CRQ MET PRO CYS PHE ALA LYS TYR PRO ASN ASP VAL SEQRES 7 C 233 PRO ASP TYR ILE LYS SER THR PHE PRO GLU GLY PHE GLN SEQRES 8 C 233 ARG GLU SER LEU VAL GLU PHE GLY ASN ASP GLY ARG TYR SEQRES 9 C 233 ILE ALA LYS GLN LYS VAL THR LEU GLU ASN GLY ILE ILE SEQRES 10 C 233 TYR ASN ARG GLY THR ILE THR GLY ASP GLY PHE ASN GLU SEQRES 11 C 233 ASN GLY LYS ILE MET ARG ARG GLU LEU GLN ASP LYS VAL SEQRES 12 C 233 ALA PRO MET LEU THR TYR TYR TYR PRO GLU ASP ASP GLY SEQRES 13 C 233 LEU LYS CYS ILE PHE ASN GLN LEU ILE ASN GLY ASN ASN SEQRES 14 C 233 GLU ASP PHE GLN GLU VAL LYS MET SER GLN LYS ILE THR SEQRES 15 C 233 PRO LEU SER ASP GLY PRO THR ALA PRO ARG LYS LEU HIS SEQRES 16 C 233 TYR GLN HIS ILE THR LEU ASP LEU ARG LYS ASP SER SER SEQRES 17 C 233 GLU ALA ALA ASP HIS ILE VAL ILE THR GLU ASN ALA LYS SEQRES 18 C 233 ALA VAL SER ALA GLU LYS TYR ALA LYS ALA CYS PHE SEQRES 1 D 233 MET ASN MET ASN ILE GLY SER VAL VAL PHE GLN LYS PRO SEQRES 2 D 233 ILE PRO PHE VAL VAL GLN PHE GLU GLY ASP ILE ASN GLY SEQRES 3 D 233 LYS LYS PHE SER VAL ALA GLY LYS GLY ILE GLY ASP ALA SEQRES 4 D 233 ASN SER GLY LYS PHE GLU GLY LYS HIS ILE CYS THR THR SEQRES 5 D 233 GLY ASP LEU PRO ILE SER TRP GLY ALA ILE ALA CYS LEU SEQRES 6 D 233 LEU CRQ MET PRO CYS PHE ALA LYS TYR PRO ASN ASP VAL SEQRES 7 D 233 PRO ASP TYR ILE LYS SER THR PHE PRO GLU GLY PHE GLN SEQRES 8 D 233 ARG GLU SER LEU VAL GLU PHE GLY ASN ASP GLY ARG TYR SEQRES 9 D 233 ILE ALA LYS GLN LYS VAL THR LEU GLU ASN GLY ILE ILE SEQRES 10 D 233 TYR ASN ARG GLY THR ILE THR GLY ASP GLY PHE ASN GLU SEQRES 11 D 233 ASN GLY LYS ILE MET ARG ARG GLU LEU GLN ASP LYS VAL SEQRES 12 D 233 ALA PRO MET LEU THR TYR TYR TYR PRO GLU ASP ASP GLY SEQRES 13 D 233 LEU LYS CYS ILE PHE ASN GLN LEU ILE ASN GLY ASN ASN SEQRES 14 D 233 GLU ASP PHE GLN GLU VAL LYS MET SER GLN LYS ILE THR SEQRES 15 D 233 PRO LEU SER ASP GLY PRO THR ALA PRO ARG LYS LEU HIS SEQRES 16 D 233 TYR GLN HIS ILE THR LEU ASP LEU ARG LYS ASP SER SER SEQRES 17 D 233 GLU ALA ALA ASP HIS ILE VAL ILE THR GLU ASN ALA LYS SEQRES 18 D 233 ALA VAL SER ALA GLU LYS TYR ALA LYS ALA CYS PHE HET CRQ A 67 24 HET CRQ B 67 24 HET CRQ C 67 24 HET CRQ D 67 24 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET CL B 307 1 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 C 304 5 HET SO4 C 305 5 HET CL C 306 1 HET CL C 307 1 HET SO4 D 301 5 HET SO4 D 302 5 HET SO4 D 303 5 HET CL D 304 1 HET CL D 305 1 HETNAM CRQ [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY- HETNAM 2 CRQ BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC HETNAM 3 CRQ ACID HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN CRQ CHROMOPHORE (GLN-TYR-GLY) FORMUL 1 CRQ 4(C16 H16 N4 O5) FORMUL 5 SO4 23(O4 S 2-) FORMUL 14 CL 8(CL 1-) FORMUL 36 HOH *297(H2 O) HELIX 1 AA1 ILE A 5 PHE A 10 1 6 HELIX 2 AA2 SER A 58 LEU A 66 5 9 HELIX 3 AA3 MET A 70 ALA A 74 5 5 HELIX 4 AA4 ASP A 82 THR A 87 1 6 HELIX 5 AA5 ALA A 227 LYS A 232 1 6 HELIX 6 AA6 ILE B 5 LYS B 12 5 8 HELIX 7 AA7 SER B 58 ILE B 62 5 5 HELIX 8 AA8 MET B 70 ALA B 74 5 5 HELIX 9 AA9 ASP B 82 THR B 87 1 6 HELIX 10 AB1 ALA B 227 LYS B 232 1 6 HELIX 11 AB2 ASN C 4 PHE C 10 1 7 HELIX 12 AB3 SER C 58 LEU C 66 5 9 HELIX 13 AB4 MET C 70 ALA C 74 5 5 HELIX 14 AB5 ASP C 82 THR C 87 1 6 HELIX 15 AB6 ALA C 227 LYS C 232 1 6 HELIX 16 AB7 GLY D 6 PHE D 10 1 5 HELIX 17 AB8 SER D 58 LEU D 66 5 9 HELIX 18 AB9 MET D 70 ALA D 74 5 5 HELIX 19 AC1 ASP D 82 THR D 87 1 6 HELIX 20 AC2 ALA D 227 LYS D 232 1 6 SHEET 1 AA113 LEU A 141 VAL A 145 0 SHEET 2 AA113 GLY A 158 GLY A 169 -1 O ASN A 168 N LYS A 144 SHEET 3 AA113 PHE A 174 PRO A 185 -1 O GLN A 181 N CYS A 161 SHEET 4 AA113 PHE A 92 PHE A 100 -1 N GLU A 99 O LYS A 178 SHEET 5 AA113 ARG A 105 GLU A 115 -1 O ALA A 108 N SER A 96 SHEET 6 AA113 ILE A 118 ASP A 128 -1 O ILE A 118 N GLU A 115 SHEET 7 AA113 ILE A 14 ILE A 24 1 N VAL A 17 O ILE A 119 SHEET 8 AA113 LYS A 27 GLY A 37 -1 O PHE A 29 N GLY A 22 SHEET 9 AA113 LYS A 43 CYS A 50 -1 O ILE A 49 N ALA A 32 SHEET 10 AA113 HIS A 215 SER A 226 -1 O ILE A 216 N HIS A 48 SHEET 11 AA113 HIS A 197 ARG A 206 -1 N HIS A 200 O LYS A 223 SHEET 12 AA113 MET A 148 GLU A 155 -1 N TYR A 152 O HIS A 197 SHEET 13 AA113 GLY A 158 GLY A 169 -1 O ILE A 162 N TYR A 151 SHEET 1 AA212 ILE B 14 ILE B 24 0 SHEET 2 AA212 LYS B 27 ASP B 38 -1 O PHE B 29 N GLY B 22 SHEET 3 AA212 LYS B 43 CYS B 50 -1 O LYS B 43 N ASP B 38 SHEET 4 AA212 HIS B 215 SER B 226 -1 O ILE B 216 N HIS B 48 SHEET 5 AA212 HIS B 197 ARG B 206 -1 N HIS B 200 O LYS B 223 SHEET 6 AA212 MET B 148 GLU B 155 -1 N TYR B 152 O HIS B 197 SHEET 7 AA212 GLY B 158 ASN B 168 -1 O LYS B 160 N TYR B 153 SHEET 8 AA212 PHE B 174 PRO B 185 -1 O GLN B 181 N CYS B 161 SHEET 9 AA212 PHE B 92 PHE B 100 -1 N GLN B 93 O THR B 184 SHEET 10 AA212 ARG B 105 GLU B 115 -1 O TYR B 106 N VAL B 98 SHEET 11 AA212 ILE B 118 ASP B 128 -1 O ILE B 118 N GLU B 115 SHEET 12 AA212 ILE B 14 ILE B 24 1 N VAL B 17 O ASN B 121 SHEET 1 AA312 ILE C 14 ILE C 24 0 SHEET 2 AA312 LYS C 27 GLY C 37 -1 O GLY C 33 N VAL C 18 SHEET 3 AA312 LYS C 43 CYS C 50 -1 O ILE C 49 N ALA C 32 SHEET 4 AA312 HIS C 215 SER C 226 -1 O ILE C 216 N HIS C 48 SHEET 5 AA312 HIS C 197 ARG C 206 -1 N HIS C 200 O LYS C 223 SHEET 6 AA312 MET C 148 GLU C 155 -1 N TYR C 152 O HIS C 197 SHEET 7 AA312 GLY C 158 ASN C 168 -1 O ILE C 162 N TYR C 151 SHEET 8 AA312 PHE C 174 PRO C 185 -1 O GLN C 181 N CYS C 161 SHEET 9 AA312 PHE C 92 PHE C 100 -1 N GLN C 93 O THR C 184 SHEET 10 AA312 ARG C 105 GLU C 115 -1 O ALA C 108 N SER C 96 SHEET 11 AA312 ILE C 118 ASP C 128 -1 O ILE C 118 N GLU C 115 SHEET 12 AA312 ILE C 14 ILE C 24 1 N VAL C 17 O ILE C 119 SHEET 1 AA412 ILE D 14 ILE D 24 0 SHEET 2 AA412 LYS D 27 GLY D 37 -1 O PHE D 29 N GLY D 22 SHEET 3 AA412 LYS D 43 CYS D 50 -1 O LYS D 47 N LYS D 34 SHEET 4 AA412 HIS D 215 SER D 226 -1 O ILE D 216 N HIS D 48 SHEET 5 AA412 HIS D 197 ARG D 206 -1 N HIS D 200 O LYS D 223 SHEET 6 AA412 MET D 148 GLU D 155 -1 N TYR D 152 O HIS D 197 SHEET 7 AA412 GLY D 158 ASN D 168 -1 O ILE D 162 N TYR D 151 SHEET 8 AA412 PHE D 174 PRO D 185 -1 O ILE D 183 N LEU D 159 SHEET 9 AA412 PHE D 92 PHE D 100 -1 N GLU D 99 O LYS D 178 SHEET 10 AA412 ARG D 105 GLU D 115 -1 O ALA D 108 N SER D 96 SHEET 11 AA412 ILE D 118 ASP D 128 -1 O THR D 126 N ILE D 107 SHEET 12 AA412 ILE D 14 ILE D 24 1 N VAL D 17 O ASN D 121 LINK SG CYS A 64 CB2 CRQ A 67 1555 1555 1.83 LINK C LEU A 66 N1 CRQ A 67 1555 1555 1.34 LINK C3 CRQ A 67 N MET A 70 1555 1555 1.29 LINK SG CYS B 64 CB2 CRQ B 67 1555 1555 1.80 LINK C LEU B 66 N1 CRQ B 67 1555 1555 1.35 LINK C3 CRQ B 67 N MET B 70 1555 1555 1.27 LINK SG CYS C 64 CB2 CRQ C 67 1555 1555 1.79 LINK C LEU C 66 N1 CRQ C 67 1555 1555 1.33 LINK C3 CRQ C 67 N MET C 70 1555 1555 1.27 LINK SG CYS D 64 CB2 CRQ D 67 1555 1555 1.78 LINK C LEU D 66 N1 CRQ D 67 1555 1555 1.37 LINK C3 CRQ D 67 N MET D 70 1555 1555 1.23 CISPEP 1 PHE A 88 PRO A 89 0 5.92 CISPEP 2 PHE B 88 PRO B 89 0 6.83 CISPEP 3 PHE C 88 PRO C 89 0 6.40 CISPEP 4 PHE D 88 PRO D 89 0 6.61 CRYST1 182.904 182.904 155.870 90.00 90.00 120.00 P 65 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005467 0.003157 0.000000 0.00000 SCALE2 0.000000 0.006313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006416 0.00000