HEADER SIGNALING PROTEIN 16-SEP-22 8B3K TITLE CRYSTAL STRUCTURE OF HUMAN PLEXIN-B1 (20-535) IN THE UNBOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEXIN-B1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SEMAPHORIN RECEPTOR SEP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLXNB1, KIAA0407, PLXN5, SEP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS RECEPTOR, UNBOUND, GUIDANCE, ADHERENCE, NEURODEVELOPMENT, KEYWDS 2 AXONOGENESIS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.COWAN,G.HALL,M.CARR REVDAT 3 07-FEB-24 8B3K 1 REMARK REVDAT 2 31-MAY-23 8B3K 1 JRNL REVDAT 1 03-MAY-23 8B3K 0 JRNL AUTH R.COWAN,M.TROKTER,A.OLEKSY,M.FEDOROVA,K.SAWMYNADEN, JRNL AUTH 2 T.WORZFELD,S.OFFERMANNS,D.MATTHEWS,M.D.CARR,G.HALL JRNL TITL NANOBODY INHIBITORS OF PLEXIN-B1 IDENTIFY ALLOSTERY IN JRNL TITL 2 PLEXIN-SEMAPHORIN INTERACTIONS AND SIGNALING. JRNL REF J.BIOL.CHEM. V. 299 04740 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37088134 JRNL DOI 10.1016/J.JBC.2023.104740 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 69.7 REMARK 3 NUMBER OF REFLECTIONS : 36173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1901 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 5 REMARK 3 BIN FREE R VALUE : 0.5286 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.685 REMARK 200 RESOLUTION RANGE LOW (A) : 188.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.37400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 11.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 188.5 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.06300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM ACETATE, 0.2 M CADMIUM REMARK 280 SULPHATE, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 133.34600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.36400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.18200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 133.34600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.54600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.54600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 133.34600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.18200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 133.34600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.36400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 133.34600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.36400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 133.34600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 81.54600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 27.18200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 133.34600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 27.18200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 81.54600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 133.34600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 133.34600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 54.36400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 20 REMARK 465 GLN B 21 REMARK 465 PRO B 22 REMARK 465 LEU B 23 REMARK 465 ARG B 175 REMARK 465 GLY B 176 REMARK 465 VAL B 177 REMARK 465 PRO B 303 REMARK 465 THR B 304 REMARK 465 VAL B 305 REMARK 465 GLY B 306 REMARK 465 ARG B 307 REMARK 465 PRO B 308 REMARK 465 GLY B 314 REMARK 465 ALA B 315 REMARK 465 SER B 316 REMARK 465 SER B 515 REMARK 465 ARG B 516 REMARK 465 GLY B 517 REMARK 465 GLN B 518 REMARK 465 GLY B 519 REMARK 465 PRO B 520 REMARK 465 LEU B 534 REMARK 465 GLN B 535 REMARK 465 LYS B 536 REMARK 465 HIS B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 LEU A 20 REMARK 465 GLN A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 175 REMARK 465 GLY A 176 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 THR A 304 REMARK 465 VAL A 305 REMARK 465 GLY A 306 REMARK 465 ARG A 307 REMARK 465 GLY A 314 REMARK 465 ALA A 315 REMARK 465 SER A 316 REMARK 465 SER A 515 REMARK 465 ARG A 516 REMARK 465 GLY A 517 REMARK 465 GLN A 518 REMARK 465 GLY A 519 REMARK 465 PRO A 520 REMARK 465 LEU A 534 REMARK 465 GLN A 535 REMARK 465 LYS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 490 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 327 O HOH B 701 2.04 REMARK 500 OD2 ASP B 380 O HOH B 702 2.08 REMARK 500 OD2 ASP A 359 O HOH A 701 2.10 REMARK 500 ND1 HIS B 115 O HOH B 703 2.14 REMARK 500 OE2 GLU B 269 O HOH B 704 2.14 REMARK 500 OE1 GLN B 448 OG1 THR B 470 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE1 HIS A 257 OD1 ASP A 380 15555 2.10 REMARK 500 OE2 GLU B 135 OE2 GLU A 135 8555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 352 CB GLU B 352 CG 0.193 REMARK 500 GLU B 352 CG GLU B 352 CD 0.155 REMARK 500 GLU A 87 CB GLU A 87 CG 0.163 REMARK 500 GLU A 87 CG GLU A 87 CD 0.130 REMARK 500 GLU A 128 CG GLU A 128 CD 0.125 REMARK 500 GLU A 201 CB GLU A 201 CG 0.169 REMARK 500 GLU A 201 CG GLU A 201 CD 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 201 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 GLU A 201 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 36 -64.66 -100.91 REMARK 500 LEU B 62 31.71 70.50 REMARK 500 PRO B 134 130.54 -34.62 REMARK 500 VAL B 143 -63.87 -98.83 REMARK 500 TRP B 190 79.82 -156.16 REMARK 500 ARG B 224 111.64 -171.27 REMARK 500 ARG B 242 21.30 47.77 REMARK 500 TYR B 358 38.16 75.42 REMARK 500 ASP B 359 33.04 38.19 REMARK 500 SER B 362 146.99 -173.81 REMARK 500 TYR B 375 53.25 -143.89 REMARK 500 SER B 443 134.54 -174.35 REMARK 500 GLN B 448 113.38 -162.31 REMARK 500 ASP B 460 -155.51 -91.26 REMARK 500 THR B 470 -166.07 -109.61 REMARK 500 SER B 481 55.89 -112.13 REMARK 500 GLN B 484 1.75 -62.61 REMARK 500 LEU B 505 -32.85 62.18 REMARK 500 SER B 509 -156.36 -118.55 REMARK 500 GLU B 513 23.92 -74.45 REMARK 500 GLN A 126 56.70 -142.65 REMARK 500 PRO A 134 129.17 -34.39 REMARK 500 ASN A 146 45.41 -87.63 REMARK 500 PHE A 198 1.40 80.90 REMARK 500 ARG A 224 124.25 -173.56 REMARK 500 SER A 362 131.31 -172.33 REMARK 500 SER A 384 149.30 -175.42 REMARK 500 GLN A 448 106.90 -165.16 REMARK 500 ASP A 456 46.27 -62.36 REMARK 500 THR A 470 -155.70 -104.40 REMARK 500 SER A 481 66.74 -109.10 REMARK 500 ARG A 495 75.91 60.70 REMARK 500 SER A 509 -163.64 -125.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 234 0.08 SIDE CHAIN REMARK 500 ARG A 389 0.08 SIDE CHAIN REMARK 500 ARG A 455 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 806 DISTANCE = 6.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 601 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 269 OE2 REMARK 620 2 ARG B 272 NH1 109.9 REMARK 620 3 GLU B 399 OE2 75.6 113.9 REMARK 620 4 HOH B 704 O 51.9 160.4 71.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 607 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 456 OD1 REMARK 620 2 ASP B 456 OD2 51.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 602 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 465 NE2 REMARK 620 2 HOH B 765 O 88.7 REMARK 620 3 HOH B 768 O 92.0 155.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 606 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 485 NE2 REMARK 620 2 HOH B 800 O 130.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 604 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 269 OE2 REMARK 620 2 ARG A 272 NH1 110.6 REMARK 620 3 GLU A 399 OE1 111.1 68.9 REMARK 620 4 GLU A 399 OE2 92.4 124.5 55.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 602 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 465 NE2 REMARK 620 2 HOH A 775 O 82.0 REMARK 620 3 HOH A 782 O 84.8 158.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 607 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 485 NE2 REMARK 620 2 HIS A 494 ND1 84.7 REMARK 620 N 1 DBREF 8B3K B 20 535 UNP O43157 PLXB1_HUMAN 20 535 DBREF 8B3K A 20 535 UNP O43157 PLXB1_HUMAN 20 535 SEQADV 8B3K LYS B 536 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS B 537 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS B 538 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS B 539 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS B 540 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS B 541 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS B 542 UNP O43157 EXPRESSION TAG SEQADV 8B3K LYS A 536 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS A 537 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS A 538 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS A 539 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS A 540 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS A 541 UNP O43157 EXPRESSION TAG SEQADV 8B3K HIS A 542 UNP O43157 EXPRESSION TAG SEQRES 1 B 523 LEU GLN PRO LEU PRO PRO THR ALA PHE THR PRO ASN GLY SEQRES 2 B 523 THR TYR LEU GLN HIS LEU ALA ARG ASP PRO THR SER GLY SEQRES 3 B 523 THR LEU TYR LEU GLY ALA THR ASN PHE LEU PHE GLN LEU SEQRES 4 B 523 SER PRO GLY LEU GLN LEU GLU ALA THR VAL SER THR GLY SEQRES 5 B 523 PRO VAL LEU ASP SER ARG ASP CYS LEU PRO PRO VAL MET SEQRES 6 B 523 PRO ASP GLU CYS PRO GLN ALA GLN PRO THR ASN ASN PRO SEQRES 7 B 523 ASN GLN LEU LEU LEU VAL SER PRO GLY ALA LEU VAL VAL SEQRES 8 B 523 CYS GLY SER VAL HIS GLN GLY VAL CYS GLU GLN ARG ARG SEQRES 9 B 523 LEU GLY GLN LEU GLU GLN LEU LEU LEU ARG PRO GLU ARG SEQRES 10 B 523 PRO GLY ASP THR GLN TYR VAL ALA ALA ASN ASP PRO ALA SEQRES 11 B 523 VAL SER THR VAL GLY LEU VAL ALA GLN GLY LEU ALA GLY SEQRES 12 B 523 GLU PRO LEU LEU PHE VAL GLY ARG GLY TYR THR SER ARG SEQRES 13 B 523 GLY VAL GLY GLY GLY ILE PRO PRO ILE THR THR ARG ALA SEQRES 14 B 523 LEU TRP PRO PRO ASP PRO GLN ALA ALA PHE SER TYR GLU SEQRES 15 B 523 GLU THR ALA LYS LEU ALA VAL GLY ARG LEU SER GLU TYR SEQRES 16 B 523 SER HIS HIS PHE VAL SER ALA PHE ALA ARG GLY ALA SER SEQRES 17 B 523 ALA TYR PHE LEU PHE LEU ARG ARG ASP LEU GLN ALA GLN SEQRES 18 B 523 SER ARG ALA PHE ARG ALA TYR VAL SER ARG VAL CYS LEU SEQRES 19 B 523 ARG ASP GLN HIS TYR TYR SER TYR VAL GLU LEU PRO LEU SEQRES 20 B 523 ALA CYS GLU GLY GLY ARG TYR GLY LEU ILE GLN ALA ALA SEQRES 21 B 523 ALA VAL ALA THR SER ARG GLU VAL ALA HIS GLY GLU VAL SEQRES 22 B 523 LEU PHE ALA ALA PHE SER SER ALA ALA PRO PRO THR VAL SEQRES 23 B 523 GLY ARG PRO PRO SER ALA ALA ALA GLY ALA SER GLY ALA SEQRES 24 B 523 SER ALA LEU CYS ALA PHE PRO LEU ASP GLU VAL ASP ARG SEQRES 25 B 523 LEU ALA ASN ARG THR ARG ASP ALA CYS TYR THR ARG GLU SEQRES 26 B 523 GLY ARG ALA GLU ASP GLY THR GLU VAL ALA TYR ILE GLU SEQRES 27 B 523 TYR ASP VAL ASN SER ASP CYS ALA GLN LEU PRO VAL ASP SEQRES 28 B 523 THR LEU ASP ALA TYR PRO CYS GLY SER ASP HIS THR PRO SEQRES 29 B 523 SER PRO MET ALA SER ARG VAL PRO LEU GLU ALA THR PRO SEQRES 30 B 523 ILE LEU GLU TRP PRO GLY ILE GLN LEU THR ALA VAL ALA SEQRES 31 B 523 VAL THR MET GLU ASP GLY HIS THR ILE ALA PHE LEU GLY SEQRES 32 B 523 ASP SER GLN GLY GLN LEU HIS ARG VAL TYR LEU GLY PRO SEQRES 33 B 523 GLY SER ASP GLY HIS PRO TYR SER THR GLN SER ILE GLN SEQRES 34 B 523 GLN GLY SER ALA VAL SER ARG ASP LEU THR PHE ASP GLY SEQRES 35 B 523 THR PHE GLU HIS LEU TYR VAL MET THR GLN SER THR LEU SEQRES 36 B 523 LEU LYS VAL PRO VAL ALA SER CYS ALA GLN HIS LEU ASP SEQRES 37 B 523 CYS ALA SER CYS LEU ALA HIS ARG ASP PRO TYR CYS GLY SEQRES 38 B 523 TRP CYS VAL LEU LEU GLY ARG CYS SER ARG ARG SER GLU SEQRES 39 B 523 CYS SER ARG GLY GLN GLY PRO GLU GLN TRP LEU TRP SER SEQRES 40 B 523 PHE GLN PRO GLU LEU GLY CYS LEU GLN LYS HIS HIS HIS SEQRES 41 B 523 HIS HIS HIS SEQRES 1 A 523 LEU GLN PRO LEU PRO PRO THR ALA PHE THR PRO ASN GLY SEQRES 2 A 523 THR TYR LEU GLN HIS LEU ALA ARG ASP PRO THR SER GLY SEQRES 3 A 523 THR LEU TYR LEU GLY ALA THR ASN PHE LEU PHE GLN LEU SEQRES 4 A 523 SER PRO GLY LEU GLN LEU GLU ALA THR VAL SER THR GLY SEQRES 5 A 523 PRO VAL LEU ASP SER ARG ASP CYS LEU PRO PRO VAL MET SEQRES 6 A 523 PRO ASP GLU CYS PRO GLN ALA GLN PRO THR ASN ASN PRO SEQRES 7 A 523 ASN GLN LEU LEU LEU VAL SER PRO GLY ALA LEU VAL VAL SEQRES 8 A 523 CYS GLY SER VAL HIS GLN GLY VAL CYS GLU GLN ARG ARG SEQRES 9 A 523 LEU GLY GLN LEU GLU GLN LEU LEU LEU ARG PRO GLU ARG SEQRES 10 A 523 PRO GLY ASP THR GLN TYR VAL ALA ALA ASN ASP PRO ALA SEQRES 11 A 523 VAL SER THR VAL GLY LEU VAL ALA GLN GLY LEU ALA GLY SEQRES 12 A 523 GLU PRO LEU LEU PHE VAL GLY ARG GLY TYR THR SER ARG SEQRES 13 A 523 GLY VAL GLY GLY GLY ILE PRO PRO ILE THR THR ARG ALA SEQRES 14 A 523 LEU TRP PRO PRO ASP PRO GLN ALA ALA PHE SER TYR GLU SEQRES 15 A 523 GLU THR ALA LYS LEU ALA VAL GLY ARG LEU SER GLU TYR SEQRES 16 A 523 SER HIS HIS PHE VAL SER ALA PHE ALA ARG GLY ALA SER SEQRES 17 A 523 ALA TYR PHE LEU PHE LEU ARG ARG ASP LEU GLN ALA GLN SEQRES 18 A 523 SER ARG ALA PHE ARG ALA TYR VAL SER ARG VAL CYS LEU SEQRES 19 A 523 ARG ASP GLN HIS TYR TYR SER TYR VAL GLU LEU PRO LEU SEQRES 20 A 523 ALA CYS GLU GLY GLY ARG TYR GLY LEU ILE GLN ALA ALA SEQRES 21 A 523 ALA VAL ALA THR SER ARG GLU VAL ALA HIS GLY GLU VAL SEQRES 22 A 523 LEU PHE ALA ALA PHE SER SER ALA ALA PRO PRO THR VAL SEQRES 23 A 523 GLY ARG PRO PRO SER ALA ALA ALA GLY ALA SER GLY ALA SEQRES 24 A 523 SER ALA LEU CYS ALA PHE PRO LEU ASP GLU VAL ASP ARG SEQRES 25 A 523 LEU ALA ASN ARG THR ARG ASP ALA CYS TYR THR ARG GLU SEQRES 26 A 523 GLY ARG ALA GLU ASP GLY THR GLU VAL ALA TYR ILE GLU SEQRES 27 A 523 TYR ASP VAL ASN SER ASP CYS ALA GLN LEU PRO VAL ASP SEQRES 28 A 523 THR LEU ASP ALA TYR PRO CYS GLY SER ASP HIS THR PRO SEQRES 29 A 523 SER PRO MET ALA SER ARG VAL PRO LEU GLU ALA THR PRO SEQRES 30 A 523 ILE LEU GLU TRP PRO GLY ILE GLN LEU THR ALA VAL ALA SEQRES 31 A 523 VAL THR MET GLU ASP GLY HIS THR ILE ALA PHE LEU GLY SEQRES 32 A 523 ASP SER GLN GLY GLN LEU HIS ARG VAL TYR LEU GLY PRO SEQRES 33 A 523 GLY SER ASP GLY HIS PRO TYR SER THR GLN SER ILE GLN SEQRES 34 A 523 GLN GLY SER ALA VAL SER ARG ASP LEU THR PHE ASP GLY SEQRES 35 A 523 THR PHE GLU HIS LEU TYR VAL MET THR GLN SER THR LEU SEQRES 36 A 523 LEU LYS VAL PRO VAL ALA SER CYS ALA GLN HIS LEU ASP SEQRES 37 A 523 CYS ALA SER CYS LEU ALA HIS ARG ASP PRO TYR CYS GLY SEQRES 38 A 523 TRP CYS VAL LEU LEU GLY ARG CYS SER ARG ARG SER GLU SEQRES 39 A 523 CYS SER ARG GLY GLN GLY PRO GLU GLN TRP LEU TRP SER SEQRES 40 A 523 PHE GLN PRO GLU LEU GLY CYS LEU GLN LYS HIS HIS HIS SEQRES 41 A 523 HIS HIS HIS HET CD B 601 1 HET CD B 602 1 HET CD B 603 1 HET CD B 604 1 HET CD B 605 1 HET CD B 606 1 HET CD B 607 1 HET NAG B 608 14 HET CD A 601 1 HET CD A 602 1 HET CD A 603 1 HET CD A 604 1 HET CD A 605 1 HET CD A 606 1 HET CD A 607 1 HET NAG A 608 14 HETNAM CD CADMIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CD 14(CD 2+) FORMUL 10 NAG 2(C8 H15 N O6) FORMUL 19 HOH *210(H2 O) HELIX 1 AA1 VAL B 114 GLY B 117 5 4 HELIX 2 AA2 GLY B 138 TYR B 142 5 5 HELIX 3 AA3 ASP B 193 ALA B 197 5 5 HELIX 4 AA4 ARG B 210 SER B 215 1 6 HELIX 5 AA5 LEU B 326 ARG B 343 1 18 HELIX 6 AA6 ASP B 370 TYR B 375 1 6 HELIX 7 AA7 ASP B 487 ARG B 495 1 9 HELIX 8 AA8 VAL A 114 GLY A 117 5 4 HELIX 9 AA9 ASP A 193 ALA A 197 5 5 HELIX 10 AB1 ARG A 210 SER A 215 1 6 HELIX 11 AB2 LEU A 326 ARG A 343 1 18 HELIX 12 AB3 VAL A 369 TYR A 375 1 7 HELIX 13 AB4 ASP A 487 ARG A 495 1 9 HELIX 14 AB5 ARG A 510 CYS A 514 5 5 SHEET 1 AA1 4 THR B 26 PHE B 28 0 SHEET 2 AA1 4 LEU B 474 PRO B 478 -1 O LEU B 474 N PHE B 28 SHEET 3 AA1 4 HIS B 465 MET B 469 -1 N VAL B 468 O LEU B 475 SHEET 4 AA1 4 THR B 458 PHE B 459 -1 N THR B 458 O TYR B 467 SHEET 1 AA2 4 LEU B 35 ARG B 40 0 SHEET 2 AA2 4 LEU B 47 ALA B 51 -1 O GLY B 50 N HIS B 37 SHEET 3 AA2 4 PHE B 54 LEU B 58 -1 O PHE B 54 N ALA B 51 SHEET 4 AA2 4 LEU B 64 SER B 69 -1 O GLU B 65 N GLN B 57 SHEET 1 AA3 2 VAL B 73 ASP B 75 0 SHEET 2 AA3 2 GLN B 92 THR B 94 -1 O THR B 94 N VAL B 73 SHEET 1 AA4 4 ASN B 98 VAL B 103 0 SHEET 2 AA4 4 ALA B 107 GLY B 112 -1 O VAL B 109 N LEU B 102 SHEET 3 AA4 4 CYS B 119 ARG B 123 -1 O GLU B 120 N VAL B 110 SHEET 4 AA4 4 GLN B 126 LEU B 132 -1 O LEU B 131 N GLN B 121 SHEET 1 AA5 3 THR B 152 GLN B 158 0 SHEET 2 AA5 3 PRO B 164 ARG B 170 -1 O LEU B 165 N ALA B 157 SHEET 3 AA5 3 ILE B 184 ALA B 188 -1 O ARG B 187 N LEU B 166 SHEET 1 AA6 6 HIS B 217 ARG B 224 0 SHEET 2 AA6 6 SER B 227 ARG B 235 -1 O TYR B 229 N PHE B 222 SHEET 3 AA6 6 PHE B 244 CYS B 252 -1 O VAL B 251 N ALA B 228 SHEET 4 AA6 6 VAL B 262 CYS B 268 -1 O LEU B 264 N VAL B 248 SHEET 5 AA6 6 MET B 386 SER B 388 1 O MET B 386 N GLU B 263 SHEET 6 AA6 6 ALA B 354 ILE B 356 -1 N TYR B 355 O ALA B 387 SHEET 1 AA7 5 HIS B 217 ARG B 224 0 SHEET 2 AA7 5 SER B 227 ARG B 235 -1 O TYR B 229 N PHE B 222 SHEET 3 AA7 5 PHE B 244 CYS B 252 -1 O VAL B 251 N ALA B 228 SHEET 4 AA7 5 VAL B 262 CYS B 268 -1 O LEU B 264 N VAL B 248 SHEET 5 AA7 5 LEU B 392 ALA B 394 1 O LEU B 392 N PRO B 265 SHEET 1 AA8 3 LEU B 275 THR B 283 0 SHEET 2 AA8 3 GLU B 291 ALA B 300 -1 O ALA B 296 N ALA B 278 SHEET 3 AA8 3 ALA B 311 ALA B 313 -1 O ALA B 312 N SER B 299 SHEET 1 AA9 4 LEU B 275 THR B 283 0 SHEET 2 AA9 4 GLU B 291 ALA B 300 -1 O ALA B 296 N ALA B 278 SHEET 3 AA9 4 ALA B 318 PRO B 325 -1 O CYS B 322 N ALA B 295 SHEET 4 AA9 4 LEU B 398 PRO B 401 -1 O TRP B 400 N SER B 319 SHEET 1 AB1 4 LEU B 405 GLU B 413 0 SHEET 2 AB1 4 HIS B 416 ASP B 423 -1 O PHE B 420 N ALA B 409 SHEET 3 AB1 4 GLN B 427 TYR B 432 -1 O HIS B 429 N LEU B 421 SHEET 4 AB1 4 SER B 443 SER B 446 -1 O SER B 443 N ARG B 430 SHEET 1 AB2 3 ARG B 507 SER B 509 0 SHEET 2 AB2 3 GLY B 500 CYS B 502 -1 N CYS B 502 O ARG B 507 SHEET 3 AB2 3 TRP B 523 TRP B 525 -1 O LEU B 524 N TRP B 501 SHEET 1 AB3 4 THR A 26 PHE A 28 0 SHEET 2 AB3 4 LEU A 474 PRO A 478 -1 O LYS A 476 N THR A 26 SHEET 3 AB3 4 HIS A 465 MET A 469 -1 N VAL A 468 O LEU A 475 SHEET 4 AB3 4 THR A 458 PHE A 459 -1 N THR A 458 O TYR A 467 SHEET 1 AB4 4 LEU A 35 ARG A 40 0 SHEET 2 AB4 4 LEU A 47 ALA A 51 -1 O GLY A 50 N HIS A 37 SHEET 3 AB4 4 PHE A 54 LEU A 58 -1 O LEU A 58 N LEU A 47 SHEET 4 AB4 4 LEU A 64 SER A 69 -1 O VAL A 68 N LEU A 55 SHEET 1 AB5 2 VAL A 73 ASP A 75 0 SHEET 2 AB5 2 GLN A 92 THR A 94 -1 O GLN A 92 N ASP A 75 SHEET 1 AB6 4 ASN A 98 VAL A 103 0 SHEET 2 AB6 4 LEU A 108 GLY A 112 -1 O VAL A 109 N LEU A 102 SHEET 3 AB6 4 CYS A 119 ARG A 123 -1 O ARG A 122 N LEU A 108 SHEET 4 AB6 4 GLN A 126 LEU A 132 -1 O LEU A 131 N GLN A 121 SHEET 1 AB7 3 THR A 152 GLN A 158 0 SHEET 2 AB7 3 PRO A 164 ARG A 170 -1 O LEU A 165 N ALA A 157 SHEET 3 AB7 3 ILE A 184 ALA A 188 -1 O ARG A 187 N LEU A 166 SHEET 1 AB8 6 HIS A 217 ARG A 224 0 SHEET 2 AB8 6 SER A 227 ARG A 235 -1 O TYR A 229 N PHE A 222 SHEET 3 AB8 6 PHE A 244 CYS A 252 -1 O VAL A 251 N ALA A 228 SHEET 4 AB8 6 VAL A 262 CYS A 268 -1 O LEU A 266 N ALA A 246 SHEET 5 AB8 6 MET A 386 SER A 388 1 O SER A 388 N GLU A 263 SHEET 6 AB8 6 ALA A 354 ILE A 356 -1 N TYR A 355 O ALA A 387 SHEET 1 AB9 5 HIS A 217 ARG A 224 0 SHEET 2 AB9 5 SER A 227 ARG A 235 -1 O TYR A 229 N PHE A 222 SHEET 3 AB9 5 PHE A 244 CYS A 252 -1 O VAL A 251 N ALA A 228 SHEET 4 AB9 5 VAL A 262 CYS A 268 -1 O LEU A 266 N ALA A 246 SHEET 5 AB9 5 LEU A 392 ALA A 394 1 O LEU A 392 N PRO A 265 SHEET 1 AC1 3 LEU A 275 THR A 283 0 SHEET 2 AC1 3 GLU A 291 ALA A 300 -1 O ALA A 296 N GLN A 277 SHEET 3 AC1 3 ALA A 311 ALA A 313 -1 O ALA A 312 N SER A 299 SHEET 1 AC2 4 LEU A 275 THR A 283 0 SHEET 2 AC2 4 GLU A 291 ALA A 300 -1 O ALA A 296 N GLN A 277 SHEET 3 AC2 4 ALA A 318 PRO A 325 -1 O CYS A 322 N ALA A 295 SHEET 4 AC2 4 LEU A 398 TRP A 400 -1 O TRP A 400 N SER A 319 SHEET 1 AC3 4 LEU A 405 GLU A 413 0 SHEET 2 AC3 4 HIS A 416 ASP A 423 -1 O PHE A 420 N ALA A 409 SHEET 3 AC3 4 GLN A 427 TYR A 432 -1 O HIS A 429 N LEU A 421 SHEET 4 AC3 4 SER A 443 SER A 446 -1 O SER A 443 N ARG A 430 SHEET 1 AC4 3 ARG A 507 SER A 509 0 SHEET 2 AC4 3 GLY A 500 CYS A 502 -1 N CYS A 502 O ARG A 507 SHEET 3 AC4 3 TRP A 523 TRP A 525 -1 O LEU A 524 N TRP A 501 SSBOND 1 CYS B 79 CYS B 88 1555 1555 2.03 SSBOND 2 CYS B 111 CYS B 119 1555 1555 2.05 SSBOND 3 CYS B 252 CYS B 377 1555 1555 2.09 SSBOND 4 CYS B 268 CYS B 322 1555 1555 2.04 SSBOND 5 CYS B 340 CYS B 364 1555 1555 2.06 SSBOND 6 CYS B 482 CYS B 499 1555 1555 2.05 SSBOND 7 CYS B 488 CYS B 533 1555 1555 2.05 SSBOND 8 CYS B 491 CYS B 508 1555 1555 2.04 SSBOND 9 CYS B 502 CYS B 514 1555 1555 2.05 SSBOND 10 CYS A 79 CYS A 88 1555 1555 2.04 SSBOND 11 CYS A 111 CYS A 119 1555 1555 2.01 SSBOND 12 CYS A 252 CYS A 377 1555 1555 2.05 SSBOND 13 CYS A 268 CYS A 322 1555 1555 2.03 SSBOND 14 CYS A 340 CYS A 364 1555 1555 2.06 SSBOND 15 CYS A 482 CYS A 499 1555 1555 2.03 SSBOND 16 CYS A 488 CYS A 533 1555 1555 2.05 SSBOND 17 CYS A 491 CYS A 508 1555 1555 2.05 SSBOND 18 CYS A 502 CYS A 514 1555 1555 2.02 LINK ND2 ASN B 334 C1 NAG B 608 1555 1555 1.44 LINK ND2 ASN A 334 C1 NAG A 608 1555 1555 1.44 LINK NE2 HIS B 217 CD CD B 603 1555 1555 2.54 LINK OE2 GLU B 269 CD CD B 601 1555 1555 2.41 LINK NH1 ARG B 272 CD CD B 601 1555 1555 2.59 LINK OE2 GLU B 399 CD CD B 601 1555 1555 2.48 LINK NE2 HIS B 416 CD CD B 604 1555 1555 2.64 LINK OD1 ASP B 456 CD CD B 607 1555 1555 2.56 LINK OD2 ASP B 456 CD CD B 607 1555 1555 2.50 LINK NE2 HIS B 465 CD CD B 602 1555 1555 1.95 LINK NE2 HIS B 485 CD CD B 606 1555 1555 2.24 LINK CD CD B 601 O HOH B 704 1555 1555 2.49 LINK CD CD B 602 O HOH B 765 1555 1555 2.62 LINK CD CD B 602 O HOH B 768 1555 1555 2.57 LINK CD CD B 606 O HOH B 800 1555 1555 2.70 LINK NE2 HIS A 217 CD CD A 601 1555 1555 2.52 LINK OE2 GLU A 269 CD CD A 604 1555 1555 2.47 LINK NH1 ARG A 272 CD CD A 604 1555 1555 2.30 LINK OE1 GLU A 399 CD CD A 604 1555 1555 2.56 LINK OE2 GLU A 399 CD CD A 604 1555 1555 1.92 LINK NE2 HIS A 416 CD CD A 603 1555 1555 2.62 LINK NE2 HIS A 465 CD CD A 602 1555 1555 2.43 LINK NE2 HIS A 485 CD CD A 607 1555 1555 2.42 LINK ND1 HIS A 494 CD CD A 607 1555 1555 2.70 LINK CD CD A 602 O HOH A 775 1555 1555 2.58 LINK CD CD A 602 O HOH A 782 1555 1555 2.59 CISPEP 1 GLY B 71 PRO B 72 0 2.22 CISPEP 2 PRO B 81 PRO B 82 0 -3.65 CISPEP 3 SER B 384 PRO B 385 0 -3.74 CISPEP 4 GLY A 71 PRO A 72 0 6.18 CISPEP 5 PRO A 81 PRO A 82 0 2.13 CISPEP 6 SER A 384 PRO A 385 0 -2.75 CRYST1 266.692 266.692 108.728 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009197 0.00000