HEADER PROTEIN BINDING 20-SEP-22 8B4J TITLE RFA1-N-TERMINAL DOMAIN IN COMPLEX WITH PHOSPHORYLATED DDC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION FACTOR A PROTEIN 1; COMPND 3 CHAIN: O; COMPND 4 SYNONYM: RF-A PROTEIN 1,DNA-BINDING PROTEIN BUF2,REPLICATION PROTEIN COMPND 5 A 69 KDA DNA-BINDING SUBUNIT,SINGLE-STRANDED DNA-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA DAMAGE CHECKPOINT PROTEIN LCD1; COMPND 9 CHAIN: P; COMPND 10 SYNONYM: DNA DAMAGE CHECKPOINT PROTEIN 2,LETHAL,CHECKPOINT-DEFECTIVE, COMPND 11 DNA DAMAGE-SENSITIVE PROTEIN 1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: RFA1, BUF2, RPA1, YAR007C, FUN3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: LCD1, DDC2, PIE1, YDR499W; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS COMPLEX, OB-FOLD, REPLICATION PROTEIN A, DNA DAMAGE RESPONSE, KEYWDS 2 REPLICATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.A.YATES,X.ZHANG REVDAT 1 27-SEP-23 8B4J 0 JRNL AUTH L.A.YATES,E.A.TANNOUS,R.M.MORGAN,P.M.BURGERS,X.ZHANG JRNL TITL A DNA DAMAGE-INDUCED PHOSPHORYLATION CIRCUIT ENHANCES MEC1 JRNL TITL 2 ATR DDC2 ATRIP RECRUITMENT TO REPLICATION PROTEIN A. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 50120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36996117 JRNL DOI 10.1073/PNAS.2300150120 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0100 - 3.0200 0.99 2900 177 0.1846 0.2223 REMARK 3 2 3.0200 - 2.4000 1.00 2714 148 0.1997 0.2486 REMARK 3 3 2.4000 - 2.1000 1.00 2650 139 0.1814 0.2128 REMARK 3 4 2.1000 - 1.9000 1.00 2636 125 0.1901 0.2301 REMARK 3 5 1.9000 - 1.7700 1.00 2617 154 0.2012 0.2241 REMARK 3 6 1.7700 - 1.6600 1.00 2548 136 0.2160 0.2597 REMARK 3 7 1.6600 - 1.5800 1.00 2607 122 0.2255 0.2821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.165 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.815 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1127 REMARK 3 ANGLE : 1.624 1521 REMARK 3 CHIRALITY : 0.068 173 REMARK 3 PLANARITY : 0.016 198 REMARK 3 DIHEDRAL : 15.334 158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 3 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4454 23.9115 11.3407 REMARK 3 T TENSOR REMARK 3 T11: 0.1628 T22: 0.3848 REMARK 3 T33: 0.6926 T12: -0.1380 REMARK 3 T13: 0.0017 T23: -0.2038 REMARK 3 L TENSOR REMARK 3 L11: 6.0874 L22: 2.8393 REMARK 3 L33: 6.1677 L12: -0.7171 REMARK 3 L13: -0.3268 L23: -3.1693 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: -0.2362 S13: 0.1742 REMARK 3 S21: -0.0683 S22: 0.0820 S23: -1.4044 REMARK 3 S31: -0.3966 S32: 1.6301 S33: 0.0678 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 10 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9453 22.0118 10.1336 REMARK 3 T TENSOR REMARK 3 T11: 0.0887 T22: 0.1499 REMARK 3 T33: 0.1720 T12: 0.0159 REMARK 3 T13: -0.0122 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 4.0370 L22: 3.1917 REMARK 3 L33: 5.1010 L12: -0.8598 REMARK 3 L13: -0.2687 L23: 0.4149 REMARK 3 S TENSOR REMARK 3 S11: -0.1810 S12: -0.3546 S13: 0.2070 REMARK 3 S21: -0.0568 S22: 0.1194 S23: 0.0169 REMARK 3 S31: -0.3145 S32: -0.0281 S33: 0.0683 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 34 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7507 4.6945 12.5862 REMARK 3 T TENSOR REMARK 3 T11: 0.3440 T22: 0.2626 REMARK 3 T33: 0.5902 T12: 0.0551 REMARK 3 T13: 0.0862 T23: 0.1225 REMARK 3 L TENSOR REMARK 3 L11: 0.3477 L22: 5.1353 REMARK 3 L33: 6.4441 L12: -0.7977 REMARK 3 L13: 0.9396 L23: 1.2453 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: -0.7888 S13: -1.1583 REMARK 3 S21: 0.3568 S22: -0.1100 S23: 0.1796 REMARK 3 S31: 1.1766 S32: -0.1619 S33: -0.0486 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 52 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1614 11.1404 7.8912 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1691 REMARK 3 T33: 0.2461 T12: 0.0422 REMARK 3 T13: 0.0237 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 3.5745 L22: 2.7169 REMARK 3 L33: 3.3659 L12: -0.7987 REMARK 3 L13: -0.6748 L23: 0.7879 REMARK 3 S TENSOR REMARK 3 S11: -0.1521 S12: -0.1513 S13: -0.4027 REMARK 3 S21: -0.0827 S22: 0.0147 S23: 0.0022 REMARK 3 S31: 0.4416 S32: 0.2382 S33: 0.0973 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 84 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8934 14.8736 13.5447 REMARK 3 T TENSOR REMARK 3 T11: 0.1711 T22: 0.4277 REMARK 3 T33: 0.3096 T12: 0.0317 REMARK 3 T13: 0.0362 T23: 0.0724 REMARK 3 L TENSOR REMARK 3 L11: 7.1066 L22: 5.2402 REMARK 3 L33: 4.4907 L12: 2.7815 REMARK 3 L13: -5.2039 L23: -2.5679 REMARK 3 S TENSOR REMARK 3 S11: -0.1485 S12: -0.8514 S13: -0.1768 REMARK 3 S21: 0.3441 S22: 0.0694 S23: 0.4280 REMARK 3 S31: 0.3055 S32: -0.0584 S33: 0.1050 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 95 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4670 13.8432 6.5953 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.0683 REMARK 3 T33: 0.1877 T12: 0.0223 REMARK 3 T13: 0.0014 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 4.6955 L22: 2.3368 REMARK 3 L33: 6.1023 L12: -0.1348 REMARK 3 L13: -0.5968 L23: 1.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: 0.1635 S13: -0.4076 REMARK 3 S21: -0.1314 S22: 0.0354 S23: -0.0616 REMARK 3 S31: 0.1263 S32: -0.1698 S33: 0.1051 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 108 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3035 15.8954 18.0348 REMARK 3 T TENSOR REMARK 3 T11: 0.3201 T22: 0.6122 REMARK 3 T33: 0.3879 T12: 0.1157 REMARK 3 T13: -0.0241 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 6.8028 L22: 1.4874 REMARK 3 L33: 7.3061 L12: -2.4330 REMARK 3 L13: -6.8161 L23: 1.9175 REMARK 3 S TENSOR REMARK 3 S11: -0.2425 S12: -1.1838 S13: 0.2430 REMARK 3 S21: 0.1852 S22: 0.2009 S23: -0.8023 REMARK 3 S31: 0.3061 S32: 1.5856 S33: 0.0428 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'O' AND (RESID 120 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9871 23.0904 22.4442 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.4842 REMARK 3 T33: 0.2153 T12: 0.0923 REMARK 3 T13: 0.0043 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 7.0838 L22: 6.8985 REMARK 3 L33: 0.5173 L12: -0.4110 REMARK 3 L13: -1.3064 L23: -1.2800 REMARK 3 S TENSOR REMARK 3 S11: 0.1561 S12: -0.3499 S13: 0.3139 REMARK 3 S21: 0.1008 S22: -0.1785 S23: 0.4329 REMARK 3 S31: -0.2364 S32: -0.6073 S33: -0.0574 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 10 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8264 4.3867 14.0723 REMARK 3 T TENSOR REMARK 3 T11: 0.4191 T22: 0.5782 REMARK 3 T33: 0.5250 T12: -0.1279 REMARK 3 T13: -0.1001 T23: 0.1234 REMARK 3 L TENSOR REMARK 3 L11: 1.2755 L22: 3.8086 REMARK 3 L33: 6.6535 L12: -0.4483 REMARK 3 L13: -2.3401 L23: -2.1244 REMARK 3 S TENSOR REMARK 3 S11: -0.5381 S12: 0.4413 S13: 0.0133 REMARK 3 S21: -0.4638 S22: 0.2241 S23: 0.6023 REMARK 3 S31: 0.7644 S32: 1.0423 S33: -0.0063 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 56.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5OMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM ZINC CHLORIDE, 0.1M MES, PH 6.0, REMARK 280 20% W/V PEG 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 188.04133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.02067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.03100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.01033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 235.05167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 188.04133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 94.02067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.01033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 141.03100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 235.05167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH O 332 LIES ON A SPECIAL POSITION. REMARK 375 HOH O 349 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY O -1 REMARK 465 PRO O 0 REMARK 465 MET O 1 REMARK 465 SER O 2 REMARK 465 SER O 37 REMARK 465 ASP O 38 REMARK 465 GLY O 39 REMARK 465 ALA O 40 REMARK 465 ASN O 41 REMARK 465 GLU P 4 REMARK 465 THR P 5 REMARK 465 VAL P 6 REMARK 465 GLY P 7 REMARK 465 GLU P 8 REMARK 465 PHE P 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN O 19 CG CD OE1 NE2 REMARK 470 ASN O 33 CG OD1 ND2 REMARK 470 LYS O 36 CG CD CE NZ REMARK 470 LYS O 45 CG CD CE NZ REMARK 470 GLN O 64 CG CD OE1 NE2 REMARK 470 GLU O 73 CG CD OE1 OE2 REMARK 470 ARG O 109 CG CD NE CZ NH1 NH2 REMARK 470 GLN O 115 CG CD OE1 NE2 REMARK 470 SER P 10 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS O 18 O HOH O 301 1.42 REMARK 500 HH22 ARG O 91 O LEU O 132 1.54 REMARK 500 ZN ZN P 101 O HOH P 202 1.60 REMARK 500 NZ LYS O 18 O HOH O 301 1.95 REMARK 500 O HOH O 358 O HOH O 364 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS O 12 ZN ZN O 202 10665 1.24 REMARK 500 OE1 GLU O 104 HH21 ARG P 24 8665 1.40 REMARK 500 HE2 HIS O 56 ZN ZN P 101 10555 1.45 REMARK 500 OE1 GLU O 104 NH2 ARG P 24 8665 1.85 REMARK 500 O HOH O 345 O HOH O 363 8665 2.01 REMARK 500 O HOH O 339 O HOH O 356 8565 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN O 5 CD GLN O 5 OE1 -0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN O 5 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 GLN O 5 CG - CD - NE2 ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG P 24 CG - CD - NE ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN O 23 72.23 -151.07 REMARK 500 ASN O 63 -131.38 53.96 REMARK 500 SEP P 11 -154.83 -126.88 REMARK 500 LEU P 21 -158.78 -86.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN O 5 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN O 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS O 12 NE2 REMARK 620 2 TYR O 123 OH 110.1 REMARK 620 3 HIS O 127 NE2 140.9 37.4 REMARK 620 4 GLU O 130 OE1 88.5 161.3 125.0 REMARK 620 5 GLU O 130 OE2 109.8 113.6 80.2 55.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS O 56 NE2 REMARK 620 2 SEP P 11 O3P 151.2 REMARK 620 3 ASP P 12 OD1 143.0 11.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP P 11 O2P REMARK 620 2 ASP P 13 OD1 110.0 REMARK 620 3 ASP P 13 OD2 166.7 57.0 REMARK 620 4 HOH P 202 O 87.9 106.7 93.3 REMARK 620 5 HOH P 203 O 102.4 112.4 86.5 132.6 REMARK 620 N 1 2 3 4 DBREF 8B4J O 1 132 UNP P22336 RFA1_YEAST 1 132 DBREF 8B4J P 4 24 UNP Q04377 LCD1_YEAST 4 24 SEQADV 8B4J GLY O -1 UNP P22336 EXPRESSION TAG SEQADV 8B4J PRO O 0 UNP P22336 EXPRESSION TAG SEQRES 1 O 134 GLY PRO MET SER SER VAL GLN LEU SER ARG GLY ASP PHE SEQRES 2 O 134 HIS SER ILE PHE THR ASN LYS GLN ARG TYR ASP ASN PRO SEQRES 3 O 134 THR GLY GLY VAL TYR GLN VAL TYR ASN THR ARG LYS SER SEQRES 4 O 134 ASP GLY ALA ASN SER ASN ARG LYS ASN LEU ILE MET ILE SEQRES 5 O 134 SER ASP GLY ILE TYR HIS MET LYS ALA LEU LEU ARG ASN SEQRES 6 O 134 GLN ALA ALA SER LYS PHE GLN SER MET GLU LEU GLN ARG SEQRES 7 O 134 GLY ASP ILE ILE ARG VAL ILE ILE ALA GLU PRO ALA ILE SEQRES 8 O 134 VAL ARG GLU ARG LYS LYS TYR VAL LEU LEU VAL ASP ASP SEQRES 9 O 134 PHE GLU LEU VAL GLN SER ARG ALA ASP MET VAL ASN GLN SEQRES 10 O 134 THR SER THR PHE LEU ASP ASN TYR PHE SER GLU HIS PRO SEQRES 11 O 134 ASN GLU THR LEU SEQRES 1 P 21 GLU THR VAL GLY GLU PHE SER SEP ASP ASP ASP ASP ASP SEQRES 2 P 21 ILE LEU LEU GLU LEU GLY THR ARG MODRES 8B4J SEP P 11 SER MODIFIED RESIDUE HET SEP P 11 13 HET EDO O 201 10 HET ZN O 202 1 HET ZN P 101 1 HET ZN P 102 1 HETNAM SEP PHOSPHOSERINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN SEP PHOSPHONOSERINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 EDO C2 H6 O2 FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *72(H2 O) HELIX 1 AA1 GLY O 9 ASN O 17 1 9 HELIX 2 AA2 ASN O 17 ASN O 23 1 7 HELIX 3 AA3 SER O 42 LYS O 45 5 4 HELIX 4 AA4 ARG O 62 GLU O 73 1 12 HELIX 5 AA5 LEU O 120 GLU O 126 1 7 HELIX 6 AA6 ASP P 14 LEU P 21 1 8 SHEET 1 AA1 7 THR O 118 PHE O 119 0 SHEET 2 AA1 7 TYR O 55 LEU O 61 1 N HIS O 56 O THR O 118 SHEET 3 AA1 7 LYS O 95 GLN O 107 1 O VAL O 100 N LEU O 60 SHEET 4 AA1 7 ILE O 79 VAL O 90 -1 N ILE O 79 O GLN O 107 SHEET 5 AA1 7 VAL O 28 ASN O 33 -1 N TYR O 29 O ILE O 80 SHEET 6 AA1 7 LEU O 47 SER O 51 -1 O MET O 49 N TYR O 32 SHEET 7 AA1 7 TYR O 55 LEU O 61 -1 O ALA O 59 N ILE O 48 LINK C SER P 10 N SEP P 11 1555 1555 1.34 LINK C SEP P 11 N ASP P 12 1555 1555 1.34 LINK NE2 HIS O 12 ZN ZN O 202 1555 10665 2.04 LINK NE2 HIS O 56 ZN ZN P 101 1555 10555 2.25 LINK OH TYR O 123 ZN ZN O 202 1555 10665 2.06 LINK NE2 HIS O 127 ZN ZN O 202 1555 1555 2.13 LINK OE1 GLU O 130 ZN ZN O 202 1555 10665 2.57 LINK OE2 GLU O 130 ZN ZN O 202 1555 10665 2.01 LINK O3P SEP P 11 ZN ZN P 101 1555 1555 1.90 LINK O2P SEP P 11 ZN ZN P 102 1555 1555 1.93 LINK OD1 ASP P 12 ZN ZN P 101 1555 1555 1.95 LINK OD1 ASP P 13 ZN ZN P 102 1555 1555 2.05 LINK OD2 ASP P 13 ZN ZN P 102 1555 1555 2.53 LINK ZN ZN P 102 O HOH P 202 1555 1555 2.05 LINK ZN ZN P 102 O HOH P 203 1555 1555 2.07 CRYST1 39.996 39.996 282.062 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025003 0.014435 0.000000 0.00000 SCALE2 0.000000 0.028870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003545 0.00000