HEADER OXIDOREDUCTASE 24-SEP-22 8B5T TITLE CRYSTAL STRUCTURE OF QUINONOID DIHYDROPTERIDINE REDUCTASE FROM TITLE 2 LEISHMANIA MAJOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINONOID DIHYDROPTERIDINE REDUCTASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 1.5.1.34,1.6.99.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: QDPR-7, QDPR, QDPR-2, QDPR-3, QDPR-4, QDPR-5, QDPR-6, SOURCE 5 LMJF_34_4360, LMJF_34_4390, LMJF_34_4420, LMJF_34_4450, SOURCE 6 LMJF_34_4480, LMJF_34_4510; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS QDPR, LEISHMANIA, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ROBINSON,A.H.FAIRLAMB REVDAT 2 31-JAN-24 8B5T 1 REMARK REVDAT 1 05-OCT-22 8B5T 0 JRNL AUTH D.A.ROBINSON,A.H.FAIRLAMB JRNL TITL CRYSTAL STRUCTURE OF QUINONOID DIHYDROPTERIDINE REDUCTASE JRNL TITL 2 FROM LEISHMANIA MAJOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 37914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4845 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4922 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4688 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6718 ; 1.569 ; 1.619 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10751 ; 1.387 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 677 ; 7.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;38.273 ;22.872 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;14.408 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.233 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 703 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5708 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1054 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8B5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92045 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.78100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DIR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 0.2M MGCL2, 0.1M NA REMARK 280 ACETATE PH 5.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.09933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.54967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.54967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.09933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -62.54967 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 358 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS C 0 REMARK 465 ALA C 35 REMARK 465 ALA C 36 REMARK 465 VAL C 37 REMARK 465 GLN C 38 REMARK 465 GLN C 39 REMARK 465 GLY C 40 REMARK 465 ASP C 41 REMARK 465 GLU C 42 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 VAL A 37 CG1 CG2 REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 VAL B 37 CG1 CG2 REMARK 470 GLN B 38 CG CD OE1 NE2 REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 MET B 182 CG SD CE REMARK 470 ARG C 10 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 25 CG CD CE NZ REMARK 470 LYS C 60 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 318 O HOH C 333 1.98 REMARK 500 NH1 ARG B 15 O HOH B 301 1.99 REMARK 500 O HOH B 381 O HOH B 393 2.09 REMARK 500 CB THR A 92 O HOH A 318 2.14 REMARK 500 O HOH B 324 O HOH B 379 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 175.77 -59.50 REMARK 500 ALA A 22 52.75 70.75 REMARK 500 LYS A 25 -45.59 87.98 REMARK 500 GLN A 33 -168.44 -76.13 REMARK 500 ALA A 34 -47.84 1.38 REMARK 500 GLN A 38 22.18 46.86 REMARK 500 GLN A 39 -104.31 -91.28 REMARK 500 ASP A 162 19.25 59.24 REMARK 500 THR A 171 -69.10 -99.72 REMARK 500 SER A 207 172.52 -51.97 REMARK 500 GLN B 38 -80.61 -73.74 REMARK 500 GLN B 39 -46.69 -153.85 REMARK 500 MET B 135 59.15 -141.00 REMARK 500 LYS C 25 -27.34 98.37 REMARK 500 LEU C 66 98.51 122.85 REMARK 500 LYS C 116 133.24 -38.85 REMARK 500 THR C 171 -77.35 -97.25 REMARK 500 SER C 207 -179.10 -67.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN C 23 GLY C 24 144.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 8B5T A 1 229 UNP Q4Q290 Q4Q290_LEIMA 1 229 DBREF 8B5T B 1 229 UNP Q4Q290 Q4Q290_LEIMA 1 229 DBREF 8B5T C 1 229 UNP Q4Q290 Q4Q290_LEIMA 1 229 SEQADV 8B5T HIS A 0 UNP Q4Q290 EXPRESSION TAG SEQADV 8B5T HIS B 0 UNP Q4Q290 EXPRESSION TAG SEQADV 8B5T HIS C 0 UNP Q4Q290 EXPRESSION TAG SEQRES 1 A 230 HIS MET LYS ASN VAL LEU LEU ILE GLY ALA ARG GLY ALA SEQRES 2 A 230 LEU GLY ARG ALA VAL ALA ASN ALA PHE ALA ASN GLY LYS SEQRES 3 A 230 TRP SER ILE ILE SER VAL ASP GLN ALA ALA ALA VAL GLN SEQRES 4 A 230 GLN GLY ASP GLU CYS CYS ALA VAL ASN PRO ALA SER SER SEQRES 5 A 230 ILE GLU GLU LEU GLN GLN ALA TYR LYS SER ALA VAL THR SEQRES 6 A 230 GLY LEU LYS VAL ASP ALA VAL ILE ASN VAL ALA GLY GLY SEQRES 7 A 230 TRP ALA GLY GLY SER VAL ALA ASP ALA SER THR ALA ALA SEQRES 8 A 230 SER THR GLU LEU MET LEU ARG GLN SER LEU PHE SER SER SEQRES 9 A 230 VAL ALA ALA ALA HIS VAL PHE SER THR GLN GLY GLU LYS SEQRES 10 A 230 ASN GLY LEU LEU LEU LEU THR GLY ALA ALA ALA ALA VAL SEQRES 11 A 230 SER PRO THR PRO GLY MET ILE GLY TYR GLY THR ALA LYS SEQRES 12 A 230 SER ALA VAL HIS PHE LEU CYS GLN SER ILE ALA GLU ASP SEQRES 13 A 230 PRO SER VAL LEU PRO THR ASP ALA SER VAL LEU ALA ILE SEQRES 14 A 230 LEU PRO THR ILE LEU ASP THR PRO GLY ASN ARG SER ALA SEQRES 15 A 230 MET PRO HIS ALA ASP ARG SER THR TRP THR SER LEU GLU SEQRES 16 A 230 ASP VAL ALA GLN GLN ILE VAL GLU TRP SER ASN GLY SER SEQRES 17 A 230 ARG ARG PRO ALA SER GLY SER LEU VAL LYS ILE VAL THR SEQRES 18 A 230 GLU ASN SER LYS THR ARG PHE ILE VAL SEQRES 1 B 230 HIS MET LYS ASN VAL LEU LEU ILE GLY ALA ARG GLY ALA SEQRES 2 B 230 LEU GLY ARG ALA VAL ALA ASN ALA PHE ALA ASN GLY LYS SEQRES 3 B 230 TRP SER ILE ILE SER VAL ASP GLN ALA ALA ALA VAL GLN SEQRES 4 B 230 GLN GLY ASP GLU CYS CYS ALA VAL ASN PRO ALA SER SER SEQRES 5 B 230 ILE GLU GLU LEU GLN GLN ALA TYR LYS SER ALA VAL THR SEQRES 6 B 230 GLY LEU LYS VAL ASP ALA VAL ILE ASN VAL ALA GLY GLY SEQRES 7 B 230 TRP ALA GLY GLY SER VAL ALA ASP ALA SER THR ALA ALA SEQRES 8 B 230 SER THR GLU LEU MET LEU ARG GLN SER LEU PHE SER SER SEQRES 9 B 230 VAL ALA ALA ALA HIS VAL PHE SER THR GLN GLY GLU LYS SEQRES 10 B 230 ASN GLY LEU LEU LEU LEU THR GLY ALA ALA ALA ALA VAL SEQRES 11 B 230 SER PRO THR PRO GLY MET ILE GLY TYR GLY THR ALA LYS SEQRES 12 B 230 SER ALA VAL HIS PHE LEU CYS GLN SER ILE ALA GLU ASP SEQRES 13 B 230 PRO SER VAL LEU PRO THR ASP ALA SER VAL LEU ALA ILE SEQRES 14 B 230 LEU PRO THR ILE LEU ASP THR PRO GLY ASN ARG SER ALA SEQRES 15 B 230 MET PRO HIS ALA ASP ARG SER THR TRP THR SER LEU GLU SEQRES 16 B 230 ASP VAL ALA GLN GLN ILE VAL GLU TRP SER ASN GLY SER SEQRES 17 B 230 ARG ARG PRO ALA SER GLY SER LEU VAL LYS ILE VAL THR SEQRES 18 B 230 GLU ASN SER LYS THR ARG PHE ILE VAL SEQRES 1 C 230 HIS MET LYS ASN VAL LEU LEU ILE GLY ALA ARG GLY ALA SEQRES 2 C 230 LEU GLY ARG ALA VAL ALA ASN ALA PHE ALA ASN GLY LYS SEQRES 3 C 230 TRP SER ILE ILE SER VAL ASP GLN ALA ALA ALA VAL GLN SEQRES 4 C 230 GLN GLY ASP GLU CYS CYS ALA VAL ASN PRO ALA SER SER SEQRES 5 C 230 ILE GLU GLU LEU GLN GLN ALA TYR LYS SER ALA VAL THR SEQRES 6 C 230 GLY LEU LYS VAL ASP ALA VAL ILE ASN VAL ALA GLY GLY SEQRES 7 C 230 TRP ALA GLY GLY SER VAL ALA ASP ALA SER THR ALA ALA SEQRES 8 C 230 SER THR GLU LEU MET LEU ARG GLN SER LEU PHE SER SER SEQRES 9 C 230 VAL ALA ALA ALA HIS VAL PHE SER THR GLN GLY GLU LYS SEQRES 10 C 230 ASN GLY LEU LEU LEU LEU THR GLY ALA ALA ALA ALA VAL SEQRES 11 C 230 SER PRO THR PRO GLY MET ILE GLY TYR GLY THR ALA LYS SEQRES 12 C 230 SER ALA VAL HIS PHE LEU CYS GLN SER ILE ALA GLU ASP SEQRES 13 C 230 PRO SER VAL LEU PRO THR ASP ALA SER VAL LEU ALA ILE SEQRES 14 C 230 LEU PRO THR ILE LEU ASP THR PRO GLY ASN ARG SER ALA SEQRES 15 C 230 MET PRO HIS ALA ASP ARG SER THR TRP THR SER LEU GLU SEQRES 16 C 230 ASP VAL ALA GLN GLN ILE VAL GLU TRP SER ASN GLY SER SEQRES 17 C 230 ARG ARG PRO ALA SER GLY SER LEU VAL LYS ILE VAL THR SEQRES 18 C 230 GLU ASN SER LYS THR ARG PHE ILE VAL FORMUL 4 HOH *362(H2 O) HELIX 1 AA1 GLY A 11 PHE A 21 1 11 HELIX 2 AA2 SER A 51 VAL A 63 1 13 HELIX 3 AA3 SER A 87 GLN A 113 1 27 HELIX 4 AA4 ALA A 125 SER A 130 5 6 HELIX 5 AA5 MET A 135 ASP A 155 1 21 HELIX 6 AA6 PRO A 156 LEU A 159 5 4 HELIX 7 AA7 THR A 175 MET A 182 1 8 HELIX 8 AA8 SER A 192 GLY A 206 1 15 HELIX 9 AA9 GLY B 11 ASN B 23 1 13 HELIX 10 AB1 ALA B 35 VAL B 37 5 3 HELIX 11 AB2 SER B 51 VAL B 63 1 13 HELIX 12 AB3 SER B 87 GLN B 113 1 27 HELIX 13 AB4 ALA B 125 SER B 130 5 6 HELIX 14 AB5 MET B 135 GLU B 154 1 20 HELIX 15 AB6 ASP B 155 LEU B 159 5 5 HELIX 16 AB7 THR B 175 SER B 180 1 6 HELIX 17 AB8 LEU B 193 GLY B 206 1 14 HELIX 18 AB9 GLY C 11 ALA C 22 1 12 HELIX 19 AC1 SER C 51 VAL C 63 1 13 HELIX 20 AC2 SER C 87 GLN C 113 1 27 HELIX 21 AC3 ALA C 125 SER C 130 5 6 HELIX 22 AC4 MET C 135 GLU C 154 1 20 HELIX 23 AC5 ASP C 155 LEU C 159 5 5 HELIX 24 AC6 THR C 175 MET C 182 1 8 HELIX 25 AC7 LEU C 193 ASN C 205 1 13 SHEET 1 AA1 8 CYS A 44 ALA A 45 0 SHEET 2 AA1 8 TRP A 26 ASP A 32 1 N ASP A 32 O CYS A 44 SHEET 3 AA1 8 LYS A 2 ILE A 7 1 N LYS A 2 O SER A 27 SHEET 4 AA1 8 VAL A 68 ASN A 73 1 O ILE A 72 N ILE A 7 SHEET 5 AA1 8 GLY A 114 THR A 123 1 O GLU A 115 N VAL A 68 SHEET 6 AA1 8 SER A 164 PRO A 170 1 O LEU A 166 N LEU A 122 SHEET 7 AA1 8 LEU A 215 GLU A 221 1 O VAL A 216 N LEU A 169 SHEET 8 AA1 8 LYS A 224 ILE A 228 -1 O ARG A 226 N VAL A 219 SHEET 1 AA2 8 CYS B 44 VAL B 46 0 SHEET 2 AA2 8 TRP B 26 GLN B 33 1 N ASP B 32 O CYS B 44 SHEET 3 AA2 8 LYS B 2 ILE B 7 1 N VAL B 4 O ILE B 29 SHEET 4 AA2 8 VAL B 68 ASN B 73 1 O ILE B 72 N ILE B 7 SHEET 5 AA2 8 GLY B 114 THR B 123 1 O LEU B 121 N ASN B 73 SHEET 6 AA2 8 SER B 164 PRO B 170 1 O SER B 164 N LEU B 120 SHEET 7 AA2 8 LEU B 215 GLU B 221 1 O VAL B 216 N ALA B 167 SHEET 8 AA2 8 LYS B 224 ILE B 228 -1 O ILE B 228 N LYS B 217 SHEET 1 AA3 2 LEU B 173 ASP B 174 0 SHEET 2 AA3 2 THR B 191 SER B 192 1 O THR B 191 N ASP B 174 SHEET 1 AA4 8 CYS C 44 VAL C 46 0 SHEET 2 AA4 8 TRP C 26 GLN C 33 1 N ASP C 32 O CYS C 44 SHEET 3 AA4 8 LYS C 2 ILE C 7 1 N LYS C 2 O SER C 27 SHEET 4 AA4 8 VAL C 68 ASN C 73 1 O ILE C 72 N LEU C 5 SHEET 5 AA4 8 GLY C 114 THR C 123 1 O LEU C 121 N ASN C 73 SHEET 6 AA4 8 SER C 164 PRO C 170 1 O SER C 164 N LEU C 120 SHEET 7 AA4 8 LEU C 215 GLU C 221 1 O VAL C 216 N ALA C 167 SHEET 8 AA4 8 LYS C 224 ILE C 228 -1 O ARG C 226 N VAL C 219 SHEET 1 AA5 2 LEU C 173 ASP C 174 0 SHEET 2 AA5 2 THR C 191 SER C 192 1 O THR C 191 N ASP C 174 CISPEP 1 ASN A 23 GLY A 24 0 -9.04 CISPEP 2 GLY A 24 LYS A 25 0 11.58 CISPEP 3 ALA B 181 MET B 182 0 -3.19 CISPEP 4 GLY C 24 LYS C 25 0 -5.04 CISPEP 5 GLY C 65 LEU C 66 0 9.78 CRYST1 78.986 78.986 187.649 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012660 0.007310 0.000000 0.00000 SCALE2 0.000000 0.014619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005329 0.00000