HEADER UNKNOWN FUNCTION 25-SEP-22 8B61 TITLE CRYSTAL STRUCTURE OF BFRC PROTEIN FROM BACTEROIDES FRAGILIS NCTC 9343 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL LIPOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LIPOPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / SOURCE 5 ONSLOW; SOURCE 6 GENE: BF9343_2078, NCTC9343_03740; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HMUY LIKE, HEME BINDING, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,K.BARNETT,R.W.STRANGE,T.OLCZAK REVDAT 3 01-MAY-24 8B61 1 REMARK REVDAT 2 07-JUN-23 8B61 1 JRNL REMARK REVDAT 1 31-MAY-23 8B61 0 JRNL AUTH S.V.ANTONYUK,K.SIEMINSKA,M.SMIGA,R.W.STRANGE,M.WAGNER, JRNL AUTH 2 K.J.BARNETT,T.OLCZAK JRNL TITL BACTEROIDES FRAGILIS EXPRESSES THREE PROTEINS SIMILAR TO JRNL TITL 2 PORPHYROMONAS GINGIVALIS HMUY: HEMOPHORE-LIKE PROTEINS JRNL TITL 3 DIFFERENTIALLY EVOLVED TO PARTICIPATE IN HEME ACQUISITION IN JRNL TITL 4 ORAL AND GUT MICROBIOMES. JRNL REF FASEB J. V. 37 22981 2023 JRNL REFN ESSN 1530-6860 JRNL PMID 37246607 JRNL DOI 10.1096/FJ.202300366R REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 40814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2219 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2732 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.518 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3334 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2919 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4544 ; 1.697 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6716 ; 1.364 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 7.274 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;37.245 ;23.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;13.817 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.871 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3895 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 845 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 1.201 ; 1.417 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1591 ; 1.193 ; 1.416 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1985 ; 2.038 ; 2.109 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1986 ; 2.037 ; 2.110 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 1.523 ; 1.664 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1743 ; 1.523 ; 1.665 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2556 ; 2.397 ; 2.417 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14681 ; 6.288 ;28.577 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14183 ; 6.057 ;27.176 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1084 1.7695 18.8845 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.0359 REMARK 3 T33: 0.0261 T12: 0.0127 REMARK 3 T13: 0.0116 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.0180 L22: 3.6339 REMARK 3 L33: 1.6109 L12: 1.5668 REMARK 3 L13: 0.5448 L23: 1.6593 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: 0.0375 S13: -0.0786 REMARK 3 S21: 0.0191 S22: 0.1528 S23: -0.1730 REMARK 3 S31: 0.0117 S32: 0.0849 S33: -0.0610 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0621 -28.4905 6.0022 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.0118 REMARK 3 T33: 0.0139 T12: 0.0112 REMARK 3 T13: -0.0169 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.1369 L22: 3.2847 REMARK 3 L33: 0.9024 L12: 1.3591 REMARK 3 L13: -0.4498 L23: -0.6279 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: -0.0423 S13: -0.0174 REMARK 3 S21: -0.0778 S22: -0.0248 S23: 0.0150 REMARK 3 S31: 0.1043 S32: 0.0393 S33: 0.0796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8B61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43116 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 66.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 1.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: ALPHA FOLD REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M M MAGNESIUM CHLORIDE REMARK 280 HEXAHYDRATE, 0.1M HEPES AT PH 7.5 AND 22 % W/V POLY ACRYLIC ACID REMARK 280 SODIUM SALT 5100, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.52800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.52800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 590 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 605 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 PHE A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 CYS A 11 REMARK 465 PHE A 12 REMARK 465 CYS A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 CYS A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 CYS A 22 REMARK 465 VAL A 23 REMARK 465 ASP A 24 REMARK 465 TYR A 25 REMARK 465 SER A 26 REMARK 465 ASP A 27 REMARK 465 ILE A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 TYR A 216 REMARK 465 ASP A 217 REMARK 465 ALA A 218 REMARK 465 ASN A 219 REMARK 465 VAL A 220 REMARK 465 GLU A 221 REMARK 465 ILE A 222 REMARK 465 GLY A 223 REMARK 465 ASP A 224 REMARK 465 GLU A 225 REMARK 465 GLY A 226 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 465 THR B 4 REMARK 465 GLY B 5 REMARK 465 LEU B 6 REMARK 465 PHE B 7 REMARK 465 LYS B 8 REMARK 465 THR B 9 REMARK 465 LEU B 10 REMARK 465 CYS B 11 REMARK 465 PHE B 12 REMARK 465 CYS B 13 REMARK 465 ALA B 14 REMARK 465 GLY B 15 REMARK 465 CYS B 16 REMARK 465 LEU B 17 REMARK 465 LEU B 18 REMARK 465 LEU B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 CYS B 22 REMARK 465 VAL B 23 REMARK 465 ASP B 24 REMARK 465 TYR B 25 REMARK 465 SER B 26 REMARK 465 ASP B 27 REMARK 465 ILE B 28 REMARK 465 GLN B 29 REMARK 465 ALA B 218 REMARK 465 ASN B 219 REMARK 465 VAL B 220 REMARK 465 GLU B 221 REMARK 465 ILE B 222 REMARK 465 GLY B 223 REMARK 465 ASP B 224 REMARK 465 GLU B 225 REMARK 465 GLY B 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H PHE B 154 O HOH B 402 1.32 REMARK 500 OE1 GLN A 237 HH12 ARG B 68 1.46 REMARK 500 O HOH B 412 O HOH B 592 1.86 REMARK 500 O HOH B 492 O HOH B 634 1.96 REMARK 500 O HOH B 475 O HOH B 602 1.97 REMARK 500 O HOH B 547 O HOH B 588 2.04 REMARK 500 O HOH B 530 O HOH B 620 2.05 REMARK 500 O1 GOL A 301 O HOH A 401 2.08 REMARK 500 OG SER B 40 O HOH B 401 2.09 REMARK 500 O HOH B 402 O HOH B 583 2.14 REMARK 500 O HOH B 601 O HOH B 617 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 19.73 50.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 646 DISTANCE = 7.52 ANGSTROMS DBREF 8B61 A 1 238 UNP Q5LDF1 Q5LDF1_BACFN 1 238 DBREF 8B61 B 1 238 UNP Q5LDF1 Q5LDF1_BACFN 1 238 SEQRES 1 A 238 MET LYS HIS THR GLY LEU PHE LYS THR LEU CYS PHE CYS SEQRES 2 A 238 ALA GLY CYS LEU LEU LEU SER ALA CYS VAL ASP TYR SER SEQRES 3 A 238 ASP ILE GLN PRO PHE ASP GLY LYS THR LEU PRO ARG LYS SEQRES 4 A 238 SER GLY TYR THR THR GLY VAL THR ASN ASP TRP ILE TYR SEQRES 5 A 238 PHE ASN LEU ARG THR GLY GLU ILE PHE ASN ALA LEU GLY SEQRES 6 A 238 VAL ASN ARG ASP ILE LYS GLU GLY GLY GLN MET ASN ARG SEQRES 7 A 238 THR ASP TRP ASP LEU ALA PHE CYS GLY TYR VAL MET ARG SEQRES 8 A 238 THR ASN SER GLY THR SER GLY ILE GLY ARG GLY GLY ALA SEQRES 9 A 238 ALA ASP LEU GLY TYR GLY ASN TYR GLU ASN TRP THR SER SEQRES 10 A 238 VAL ALA GLN LEU PRO SER ASP LEU LYS TRP VAL GLU ASP SEQRES 11 A 238 ASN GLN GLU VAL TYR VAL THR MET SER GLN ASN ASP TRP SEQRES 12 A 238 ASN HIS TYR LEU ILE GLU ASN GLY LEU ASP PHE ASN SER SEQRES 13 A 238 ASN PRO TRP PHE ASP PRO ASN ASN GLY PRO GLN LYS THR SEQRES 14 A 238 THR THR ASN ALA ASN PRO VAL LEU ALA GLN ALA MET SER SEQRES 15 A 238 PHE ALA GLY PRO PRO PRO VAL TYR THR PRO SER TYR HIS SEQRES 16 A 238 THR TYR VAL VAL ARG THR ALA ASP GLY LYS HIS TYR PHE SEQRES 17 A 238 LYS ILE GLN ILE ILE SER TRP TYR ASP ALA ASN VAL GLU SEQRES 18 A 238 ILE GLY ASP GLU GLY GLY ARG LEU SER TYR TYR CYS ASP SEQRES 19 A 238 GLU LEU GLN PRO SEQRES 1 B 238 MET LYS HIS THR GLY LEU PHE LYS THR LEU CYS PHE CYS SEQRES 2 B 238 ALA GLY CYS LEU LEU LEU SER ALA CYS VAL ASP TYR SER SEQRES 3 B 238 ASP ILE GLN PRO PHE ASP GLY LYS THR LEU PRO ARG LYS SEQRES 4 B 238 SER GLY TYR THR THR GLY VAL THR ASN ASP TRP ILE TYR SEQRES 5 B 238 PHE ASN LEU ARG THR GLY GLU ILE PHE ASN ALA LEU GLY SEQRES 6 B 238 VAL ASN ARG ASP ILE LYS GLU GLY GLY GLN MET ASN ARG SEQRES 7 B 238 THR ASP TRP ASP LEU ALA PHE CYS GLY TYR VAL MET ARG SEQRES 8 B 238 THR ASN SER GLY THR SER GLY ILE GLY ARG GLY GLY ALA SEQRES 9 B 238 ALA ASP LEU GLY TYR GLY ASN TYR GLU ASN TRP THR SER SEQRES 10 B 238 VAL ALA GLN LEU PRO SER ASP LEU LYS TRP VAL GLU ASP SEQRES 11 B 238 ASN GLN GLU VAL TYR VAL THR MET SER GLN ASN ASP TRP SEQRES 12 B 238 ASN HIS TYR LEU ILE GLU ASN GLY LEU ASP PHE ASN SER SEQRES 13 B 238 ASN PRO TRP PHE ASP PRO ASN ASN GLY PRO GLN LYS THR SEQRES 14 B 238 THR THR ASN ALA ASN PRO VAL LEU ALA GLN ALA MET SER SEQRES 15 B 238 PHE ALA GLY PRO PRO PRO VAL TYR THR PRO SER TYR HIS SEQRES 16 B 238 THR TYR VAL VAL ARG THR ALA ASP GLY LYS HIS TYR PHE SEQRES 17 B 238 LYS ILE GLN ILE ILE SER TRP TYR ASP ALA ASN VAL GLU SEQRES 18 B 238 ILE GLY ASP GLU GLY GLY ARG LEU SER TYR TYR CYS ASP SEQRES 19 B 238 GLU LEU GLN PRO HET GOL A 301 14 HET GOL A 302 14 HET P7W A 303 22 HET GOL B 301 14 HET P7W B 302 22 HETNAM GOL GLYCEROL HETNAM P7W PENTANE-1,3,5-TRICARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 P7W 2(C8 H12 O6) FORMUL 8 HOH *504(H2 O) HELIX 1 AA1 GLY A 41 GLY A 45 5 5 HELIX 2 AA2 SER A 117 LEU A 121 5 5 HELIX 3 AA3 SER A 139 ASN A 150 1 12 HELIX 4 AA4 ASP A 153 ASN A 157 5 5 HELIX 5 AA5 VAL A 176 GLN A 179 5 4 HELIX 6 AA6 GLY B 41 GLY B 45 5 5 HELIX 7 AA7 ASN B 111 TRP B 115 5 5 HELIX 8 AA8 SER B 117 LEU B 121 5 5 HELIX 9 AA9 SER B 139 ASN B 150 1 12 HELIX 10 AB1 ASP B 153 ASN B 157 5 5 HELIX 11 AB2 VAL B 176 GLN B 179 5 4 SHEET 1 AA1 5 LYS A 34 THR A 35 0 SHEET 2 AA1 5 SER A 230 GLU A 235 -1 O TYR A 231 N LYS A 34 SHEET 3 AA1 5 TYR A 207 SER A 214 -1 N ILE A 213 O SER A 230 SHEET 4 AA1 5 HIS A 195 ARG A 200 -1 N TYR A 197 O ILE A 210 SHEET 5 AA1 5 GLY A 103 TYR A 109 -1 N LEU A 107 O THR A 196 SHEET 1 AA2 4 ILE A 60 PHE A 61 0 SHEET 2 AA2 4 ILE A 51 PHE A 53 -1 N TYR A 52 O PHE A 61 SHEET 3 AA2 4 LEU A 83 CYS A 86 -1 O LEU A 83 N PHE A 53 SHEET 4 AA2 4 VAL A 89 THR A 92 -1 O VAL A 89 N CYS A 86 SHEET 1 AA3 2 ASN A 131 THR A 137 0 SHEET 2 AA3 2 LYS A 168 ALA A 173 -1 O THR A 169 N VAL A 136 SHEET 1 AA4 2 PHE A 160 ASP A 161 0 SHEET 2 AA4 2 GLY A 165 PRO A 166 -1 O GLY A 165 N ASP A 161 SHEET 1 AA5 2 MET A 181 ALA A 184 0 SHEET 2 AA5 2 VAL A 189 PRO A 192 -1 O VAL A 189 N ALA A 184 SHEET 1 AA6 5 LYS B 34 THR B 35 0 SHEET 2 AA6 5 SER B 230 GLU B 235 -1 O TYR B 231 N LYS B 34 SHEET 3 AA6 5 TYR B 207 SER B 214 -1 N ILE B 213 O SER B 230 SHEET 4 AA6 5 HIS B 195 ARG B 200 -1 N TYR B 197 O ILE B 210 SHEET 5 AA6 5 GLY B 103 TYR B 109 -1 N LEU B 107 O THR B 196 SHEET 1 AA7 4 ILE B 60 PHE B 61 0 SHEET 2 AA7 4 ILE B 51 PHE B 53 -1 N TYR B 52 O PHE B 61 SHEET 3 AA7 4 LEU B 83 CYS B 86 -1 O LEU B 83 N PHE B 53 SHEET 4 AA7 4 VAL B 89 THR B 92 -1 O VAL B 89 N CYS B 86 SHEET 1 AA8 2 ASN B 131 THR B 137 0 SHEET 2 AA8 2 LYS B 168 ALA B 173 -1 O THR B 169 N VAL B 136 SHEET 1 AA9 2 PHE B 160 ASP B 161 0 SHEET 2 AA9 2 GLY B 165 PRO B 166 -1 O GLY B 165 N ASP B 161 SHEET 1 AB1 2 MET B 181 ALA B 184 0 SHEET 2 AB1 2 VAL B 189 PRO B 192 -1 O THR B 191 N SER B 182 CISPEP 1 GLY A 185 PRO A 186 0 -7.49 CISPEP 2 PRO A 186 PRO A 187 0 -11.10 CISPEP 3 GLY B 185 PRO B 186 0 -4.83 CISPEP 4 PRO B 186 PRO B 187 0 -5.36 CRYST1 52.075 89.840 99.056 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019203 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010095 0.00000