HEADER VIRUS 05-OCT-22 8B9F TITLE STRUCTURE OF ECHOVIRUS 11 COMPLEXED WITH DAF (CD55) CALCULATED FROM TITLE 2 SYMMETRY EXPANSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT DECAY-ACCELERATING FACTOR; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GENOME POLYPROTEIN; COMPND 7 CHAIN: B; COMPND 8 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GENOME POLYPROTEIN; COMPND 12 CHAIN: C; COMPND 13 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: GENOME POLYPROTEIN; COMPND 17 CHAIN: A; COMPND 18 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD55, CR, DAF; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 11 ORGANISM_TAXID: 12078; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: RHABDOMYOSARCOMA (RD) CELLS; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 17 ORGANISM_TAXID: 12078; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: RHABDOMYOSARCOMA (RD) CELLS; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: ECHOVIRUS E11; SOURCE 23 ORGANISM_TAXID: 12078; SOURCE 24 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM_CELL_LINE: RHABDOMYOSARCOMA (RD) CELLS KEYWDS ECHOVIRUS, RECEPTOR, CD55, DAF, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR D.I.STUART,J.REN,L.QIN,D.ZHOU REVDAT 2 04-JAN-23 8B9F 1 JRNL REVDAT 1 07-DEC-22 8B9F 0 JRNL AUTH D.ZHOU,L.QIN,H.M.E.DUYVESTEYN,Y.ZHAO,T.Y.LIN,E.E.FRY,J.REN, JRNL AUTH 2 K.A.HUANG,D.I.STUART JRNL TITL SWITCHING OF RECEPTOR BINDING POSES BETWEEN CLOSELY RELATED JRNL TITL 2 ENTEROVIRUSES. JRNL REF VIRUSES V. 14 2022 JRNL REFN ESSN 1999-4915 JRNL PMID 36560629 JRNL DOI 10.3390/V14122625 REMARK 2 REMARK 2 RESOLUTION. 3.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.930 REMARK 3 NUMBER OF PARTICLES : 201358 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8B9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125975. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF ECHOVIRUS 11 WITH REMARK 245 DAF REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : DARK FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4100.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE E 27 REMARK 465 GLY E 28 REMARK 465 CYS E 29 REMARK 465 VAL E 30 REMARK 465 ALA E 31 REMARK 465 GLU E 32 REMARK 465 THR E 33 REMARK 465 GLY E 34 REMARK 465 GLY E 286 REMARK 465 THR E 287 REMARK 465 LYS E 288 REMARK 465 HIS E 289 REMARK 465 HIS E 290 REMARK 465 HIS E 291 REMARK 465 HIS E 292 REMARK 465 HIS E 293 REMARK 465 HIS E 294 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 CYS B 7 REMARK 465 GLY B 8 REMARK 465 TYR B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 ARG B 12 REMARK 465 VAL B 13 REMARK 465 ARG B 14 REMARK 465 SER B 15 REMARK 465 ILE B 16 REMARK 465 THR B 17 REMARK 465 LEU B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 20 REMARK 465 SER B 21 REMARK 465 THR B 22 REMARK 465 ILE B 23 REMARK 465 THR B 24 REMARK 465 THR B 25 REMARK 465 GLN B 26 REMARK 465 GLU B 27 REMARK 465 CYS B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 VAL B 31 REMARK 465 VAL B 32 REMARK 465 VAL B 33 REMARK 465 ALA B 34 REMARK 465 TYR B 35 REMARK 465 GLY B 36 REMARK 465 ARG B 37 REMARK 465 TRP B 38 REMARK 465 PRO B 39 REMARK 465 GLU B 40 REMARK 465 TYR B 41 REMARK 465 LEU B 42 REMARK 465 SER B 43 REMARK 465 ASP B 44 REMARK 465 LYS B 45 REMARK 465 GLU B 46 REMARK 465 ALA B 47 REMARK 465 THR B 48 REMARK 465 ALA B 49 REMARK 465 GLU B 50 REMARK 465 ASP B 51 REMARK 465 GLN B 52 REMARK 465 PRO B 53 REMARK 465 THR B 54 REMARK 465 GLN B 55 REMARK 465 PRO B 56 REMARK 465 ASP B 57 REMARK 465 GLN B 262 REMARK 465 GLY C 1 REMARK 465 LEU C 2 REMARK 465 PRO C 3 REMARK 465 VAL C 4 REMARK 465 MET C 5 REMARK 465 ASN C 6 REMARK 465 THR C 7 REMARK 465 PRO C 8 REMARK 465 GLY C 9 REMARK 465 SER C 10 REMARK 465 ASN C 11 REMARK 465 GLN C 12 REMARK 465 PHE C 13 REMARK 465 LEU C 14 REMARK 465 THR C 15 REMARK 465 SER C 16 REMARK 465 ASP C 17 REMARK 465 ASP C 18 REMARK 465 PHE C 19 REMARK 465 GLN C 20 REMARK 465 SER C 21 REMARK 465 PRO C 22 REMARK 465 SER C 23 REMARK 465 ALA C 24 REMARK 465 MET C 25 REMARK 465 PRO C 26 REMARK 465 GLN C 27 REMARK 465 PHE C 28 REMARK 465 ASP C 29 REMARK 465 VAL C 30 REMARK 465 THR C 31 REMARK 465 PRO C 32 REMARK 465 GLU C 33 REMARK 465 LEU C 34 REMARK 465 ASP C 35 REMARK 465 ILE C 36 REMARK 465 PRO C 37 REMARK 465 GLY C 38 REMARK 465 GLU C 39 REMARK 465 VAL C 40 REMARK 465 LYS C 41 REMARK 465 ASN C 42 REMARK 465 GLN C 238 REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ILE A 7 REMARK 465 GLU A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 THR A 17 REMARK 465 ILE A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 ASN A 24 REMARK 465 SER A 25 REMARK 465 GLN A 26 REMARK 465 ALA A 27 REMARK 465 VAL A 28 REMARK 465 PRO A 29 REMARK 465 ALA A 30 REMARK 465 LEU A 31 REMARK 465 THR A 32 REMARK 465 ALA A 33 REMARK 465 VAL A 34 REMARK 465 GLU A 35 REMARK 465 THR A 36 REMARK 465 GLY A 37 REMARK 465 HIS A 38 REMARK 465 THR A 39 REMARK 465 SER A 40 REMARK 465 GLN A 41 REMARK 465 VAL A 42 REMARK 465 VAL A 43 REMARK 465 PRO A 44 REMARK 465 GLY A 45 REMARK 465 ASP A 46 REMARK 465 THR A 47 REMARK 465 MET A 48 REMARK 465 GLN A 49 REMARK 465 THR A 50 REMARK 465 ARG A 51 REMARK 465 HIS A 52 REMARK 465 VAL A 53 REMARK 465 LYS A 54 REMARK 465 ASN A 55 REMARK 465 TYR A 56 REMARK 465 HIS A 57 REMARK 465 SER A 58 REMARK 465 ARG A 59 REMARK 465 SER A 60 REMARK 465 GLU A 61 REMARK 465 SER A 62 REMARK 465 THR A 63 REMARK 465 ILE A 64 REMARK 465 GLU A 65 REMARK 465 ASN A 66 REMARK 465 PHE A 67 REMARK 465 LEU A 68 REMARK 465 SER A 69 REMARK 465 ARG A 70 REMARK 465 SER A 71 REMARK 465 ALA A 72 REMARK 465 CYS A 73 REMARK 465 VAL A 74 REMARK 465 TYR A 75 REMARK 465 MET A 76 REMARK 465 GLY A 77 REMARK 465 GLU A 78 REMARK 465 TYR A 79 REMARK 465 TYR A 80 REMARK 465 THR A 81 REMARK 465 THR A 82 REMARK 465 ASN A 83 REMARK 465 THR A 84 REMARK 465 ASP A 85 REMARK 465 GLU A 86 REMARK 465 THR A 87 REMARK 465 LYS A 88 REMARK 465 ARG A 89 REMARK 465 PHE A 90 REMARK 465 ALA A 91 REMARK 465 SER A 92 REMARK 465 TRP A 93 REMARK 465 THR A 94 REMARK 465 ILE A 95 REMARK 465 ARG A 114 REMARK 465 PHE A 115 REMARK 465 ASP A 116 REMARK 465 VAL A 117 REMARK 465 GLU A 118 REMARK 465 VAL A 119 REMARK 465 THR A 120 REMARK 465 PHE A 121 REMARK 465 VAL A 122 REMARK 465 ILE A 123 REMARK 465 THR A 124 REMARK 465 SER A 125 REMARK 465 LYS A 126 REMARK 465 GLN A 127 REMARK 465 ASP A 128 REMARK 465 GLN A 129 REMARK 465 GLY A 130 REMARK 465 THR A 131 REMARK 465 GLN A 132 REMARK 465 LEU A 133 REMARK 465 GLY A 134 REMARK 465 GLN A 135 REMARK 465 ASP A 136 REMARK 465 MET A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 LEU A 140 REMARK 465 THR A 141 REMARK 465 HIS A 142 REMARK 465 GLN A 143 REMARK 465 ILE A 144 REMARK 465 MET A 145 REMARK 465 TYR A 146 REMARK 465 ILE A 147 REMARK 465 PRO A 148 REMARK 465 PRO A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 PRO A 152 REMARK 465 ILE A 153 REMARK 465 PRO A 154 REMARK 465 LYS A 155 REMARK 465 SER A 156 REMARK 465 THR A 157 REMARK 465 THR A 158 REMARK 465 ASP A 159 REMARK 465 TYR A 160 REMARK 465 ALA A 161 REMARK 465 TRP A 162 REMARK 465 GLN A 163 REMARK 465 THR A 164 REMARK 465 SER A 165 REMARK 465 THR A 166 REMARK 465 ASN A 167 REMARK 465 PRO A 168 REMARK 465 SER A 169 REMARK 465 ILE A 170 REMARK 465 PHE A 171 REMARK 465 TRP A 172 REMARK 465 THR A 173 REMARK 465 GLU A 174 REMARK 465 GLY A 175 REMARK 465 ASN A 176 REMARK 465 ALA A 177 REMARK 465 PRO A 178 REMARK 465 PRO A 179 REMARK 465 ARG A 180 REMARK 465 MET A 181 REMARK 465 SER A 182 REMARK 465 ILE A 183 REMARK 465 PRO A 184 REMARK 465 PHE A 185 REMARK 465 VAL A 186 REMARK 465 SER A 187 REMARK 465 ILE A 188 REMARK 465 GLY A 189 REMARK 465 ASN A 190 REMARK 465 ALA A 191 REMARK 465 TYR A 192 REMARK 465 SER A 193 REMARK 465 ASN A 194 REMARK 465 PHE A 195 REMARK 465 TYR A 196 REMARK 465 ASP A 197 REMARK 465 GLY A 198 REMARK 465 TRP A 199 REMARK 465 SER A 200 REMARK 465 HIS A 201 REMARK 465 PHE A 202 REMARK 465 SER A 203 REMARK 465 GLN A 204 REMARK 465 ASN A 205 REMARK 465 GLY A 206 REMARK 465 VAL A 207 REMARK 465 TYR A 208 REMARK 465 GLY A 209 REMARK 465 TYR A 210 REMARK 465 ASN A 211 REMARK 465 THR A 212 REMARK 465 LEU A 213 REMARK 465 ASN A 214 REMARK 465 ASN A 215 REMARK 465 MET A 216 REMARK 465 GLY A 217 REMARK 465 GLN A 218 REMARK 465 LEU A 219 REMARK 465 TYR A 220 REMARK 465 MET A 221 REMARK 465 ARG A 222 REMARK 465 HIS A 223 REMARK 465 VAL A 224 REMARK 465 ASN A 225 REMARK 465 GLY A 226 REMARK 465 PRO A 227 REMARK 465 SER A 228 REMARK 465 PRO A 229 REMARK 465 LEU A 230 REMARK 465 PRO A 231 REMARK 465 MET A 232 REMARK 465 THR A 233 REMARK 465 SER A 234 REMARK 465 ILE A 235 REMARK 465 VAL A 236 REMARK 465 ARG A 237 REMARK 465 VAL A 238 REMARK 465 TYR A 239 REMARK 465 PHE A 240 REMARK 465 LYS A 241 REMARK 465 PRO A 242 REMARK 465 LYS A 243 REMARK 465 HIS A 244 REMARK 465 VAL A 245 REMARK 465 LYS A 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 97 162.40 179.49 REMARK 500 PRO E 141 38.35 -98.13 REMARK 500 PRO E 226 -176.05 -68.17 REMARK 500 ARG B 103 117.93 -160.57 REMARK 500 THR B 140 -169.95 -116.60 REMARK 500 ASN C 56 46.21 -76.51 REMARK 500 LYS C 61 35.88 -88.65 REMARK 500 ALA A 97 38.74 -97.14 REMARK 500 VAL A 249 74.64 60.63 REMARK 500 THR A 272 -166.34 -160.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 82 PRO B 83 39.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15930 RELATED DB: EMDB REMARK 900 STRUCTURE OF ECHOVIRUS 11 COMPLEXED WITH DAF (CD55) CALCULATED FROM REMARK 900 SYMMETRY EXPANSION DBREF 8B9F E 34 285 UNP P08174 DAF_HUMAN 34 285 DBREF1 8B9F B 1 262 UNP A0A6M5CIM5_9ENTO DBREF2 8B9F B A0A6M5CIM5 70 331 DBREF1 8B9F C 1 238 UNP A0A7T7IN41_9ENTO DBREF2 8B9F C A0A7T7IN41 332 569 DBREF1 8B9F A 1 287 UNP A0A6M5CIM5_9ENTO DBREF2 8B9F A A0A6M5CIM5 570 856 SEQADV 8B9F MSE E 27 UNP P08174 INITIATING METHIONINE SEQADV 8B9F GLY E 28 UNP P08174 EXPRESSION TAG SEQADV 8B9F CYS E 29 UNP P08174 EXPRESSION TAG SEQADV 8B9F VAL E 30 UNP P08174 EXPRESSION TAG SEQADV 8B9F ALA E 31 UNP P08174 EXPRESSION TAG SEQADV 8B9F GLU E 32 UNP P08174 EXPRESSION TAG SEQADV 8B9F THR E 33 UNP P08174 EXPRESSION TAG SEQADV 8B9F GLY E 286 UNP P08174 EXPRESSION TAG SEQADV 8B9F THR E 287 UNP P08174 EXPRESSION TAG SEQADV 8B9F LYS E 288 UNP P08174 EXPRESSION TAG SEQADV 8B9F HIS E 289 UNP P08174 EXPRESSION TAG SEQADV 8B9F HIS E 290 UNP P08174 EXPRESSION TAG SEQADV 8B9F HIS E 291 UNP P08174 EXPRESSION TAG SEQADV 8B9F HIS E 292 UNP P08174 EXPRESSION TAG SEQADV 8B9F HIS E 293 UNP P08174 EXPRESSION TAG SEQADV 8B9F HIS E 294 UNP P08174 EXPRESSION TAG SEQADV 8B9F VAL B 190 UNP A0A6M5CIM ILE 259 CONFLICT SEQADV 8B9F MET B 202 UNP A0A6M5CIM ILE 271 CONFLICT SEQADV 8B9F VAL C 59 UNP A0A7T7IN4 GLU 390 CONFLICT SEQADV 8B9F LEU C 207 UNP A0A7T7IN4 SER 538 CONFLICT SEQADV 8B9F ALA A 12 UNP A0A6M5CIM THR 581 CONFLICT SEQADV 8B9F SER A 19 UNP A0A6M5CIM GLY 588 CONFLICT SEQRES 1 E 268 MSE GLY CYS VAL ALA GLU THR GLY ASP CYS GLY LEU PRO SEQRES 2 E 268 PRO ASP VAL PRO ASN ALA GLN PRO ALA LEU GLU GLY ARG SEQRES 3 E 268 THR SER PHE PRO GLU ASP THR VAL ILE THR TYR LYS CYS SEQRES 4 E 268 GLU GLU SER PHE VAL LYS ILE PRO GLY GLU LYS ASP SER SEQRES 5 E 268 VAL ILE CYS LEU LYS GLY SER GLN TRP SER ASP ILE GLU SEQRES 6 E 268 GLU PHE CYS ASN ARG SER CYS GLU VAL PRO THR ARG LEU SEQRES 7 E 268 ASN SER ALA SER LEU LYS GLN PRO TYR ILE THR GLN ASN SEQRES 8 E 268 TYR PHE PRO VAL GLY THR VAL VAL GLU TYR GLU CYS ARG SEQRES 9 E 268 PRO GLY TYR ARG ARG GLU PRO SER LEU SER PRO LYS LEU SEQRES 10 E 268 THR CYS LEU GLN ASN LEU LYS TRP SER THR ALA VAL GLU SEQRES 11 E 268 PHE CYS LYS LYS LYS SER CYS PRO ASN PRO GLY GLU ILE SEQRES 12 E 268 ARG ASN GLY GLN ILE ASP VAL PRO GLY GLY ILE LEU PHE SEQRES 13 E 268 GLY ALA THR ILE SER PHE SER CYS ASN THR GLY TYR LYS SEQRES 14 E 268 LEU PHE GLY SER THR SER SER PHE CYS LEU ILE SER GLY SEQRES 15 E 268 SER SER VAL GLN TRP SER ASP PRO LEU PRO GLU CYS ARG SEQRES 16 E 268 GLU ILE TYR CYS PRO ALA PRO PRO GLN ILE ASP ASN GLY SEQRES 17 E 268 ILE ILE GLN GLY GLU ARG ASP HIS TYR GLY TYR ARG GLN SEQRES 18 E 268 SER VAL THR TYR ALA CYS ASN LYS GLY PHE THR MSE ILE SEQRES 19 E 268 GLY GLU HIS SER ILE TYR CYS THR VAL ASN ASN ASP GLU SEQRES 20 E 268 GLY GLU TRP SER GLY PRO PRO PRO GLU CYS ARG GLY GLY SEQRES 21 E 268 THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 262 SER PRO SER ALA GLU GLU CYS GLY TYR SER ASP ARG VAL SEQRES 2 B 262 ARG SER ILE THR LEU GLY ASN SER THR ILE THR THR GLN SEQRES 3 B 262 GLU CYS ALA ASN VAL VAL VAL ALA TYR GLY ARG TRP PRO SEQRES 4 B 262 GLU TYR LEU SER ASP LYS GLU ALA THR ALA GLU ASP GLN SEQRES 5 B 262 PRO THR GLN PRO ASP VAL ALA THR CYS ARG PHE TYR THR SEQRES 6 B 262 LEU GLU SER VAL THR TRP GLU LYS ASP SER PRO GLY TRP SEQRES 7 B 262 TRP TRP LYS PHE PRO ASP ALA LEU LYS ASP MET GLY LEU SEQRES 8 B 262 PHE GLY GLN ASN MET TYR TYR HIS TYR LEU GLY ARG ALA SEQRES 9 B 262 GLY TYR THR ILE HIS VAL GLN CYS ASN ALA SER LYS PHE SEQRES 10 B 262 HIS GLN GLY CYS LEU LEU VAL VAL CYS VAL PRO GLU ALA SEQRES 11 B 262 GLU MET GLY CYS SER ASP VAL GLY GLY THR VAL ASN GLU SEQRES 12 B 262 HIS ALA ILE SER GLU GLY GLU ILE ALA LYS LYS PHE SER SEQRES 13 B 262 ALA THR ALA THR ASN GLY ALA HIS THR VAL GLN SER ILE SEQRES 14 B 262 VAL THR ASN ALA GLY MET GLY VAL GLY VAL GLY ASN LEU SEQRES 15 B 262 THR ILE TYR PRO HIS GLN TRP VAL ASN LEU ARG THR ASN SEQRES 16 B 262 ASN SER ALA THR ILE VAL MET PRO TYR ILE ASN SER VAL SEQRES 17 B 262 PRO MET ASP ASN MET PHE ARG HIS HIS ASN PHE THR LEU SEQRES 18 B 262 MET ILE ILE PRO PHE VAL SER LEU ASP TYR SER SER ASP SEQRES 19 B 262 ALA SER THR TYR VAL PRO ILE THR VAL THR VAL ALA PRO SEQRES 20 B 262 MET CYS ALA GLU TYR ASN GLY LEU ARG LEU ALA THR SER SEQRES 21 B 262 LEU GLN SEQRES 1 C 238 GLY LEU PRO VAL MET ASN THR PRO GLY SER ASN GLN PHE SEQRES 2 C 238 LEU THR SER ASP ASP PHE GLN SER PRO SER ALA MET PRO SEQRES 3 C 238 GLN PHE ASP VAL THR PRO GLU LEU ASP ILE PRO GLY GLU SEQRES 4 C 238 VAL LYS ASN LEU MET GLU ILE ALA GLU VAL ASP SER VAL SEQRES 5 C 238 VAL PRO VAL ASN ASN VAL VAL GLY LYS LEU ASP THR MET SEQRES 6 C 238 ASP ILE PHE ARG ILE PRO VAL GLN SER GLY ASN HIS GLN SEQRES 7 C 238 SER THR GLN VAL PHE GLY PHE GLN VAL GLN PRO GLY LEU SEQRES 8 C 238 ASP SER VAL PHE LYS HIS THR LEU LEU GLY GLU ILE LEU SEQRES 9 C 238 ASN TYR TYR ALA HIS TRP SER GLY SER VAL LYS LEU THR SEQRES 10 C 238 PHE VAL PHE CYS GLY SER ALA MET ALA THR GLY LYS PHE SEQRES 11 C 238 LEU LEU ALA TYR SER PRO PRO GLY ALA ASN ALA PRO LYS SEQRES 12 C 238 THR ARG LYS ASP ALA MET LEU GLY THR HIS VAL ILE TRP SEQRES 13 C 238 ASP VAL GLY LEU GLN SER SER CYS VAL LEU CYS ILE PRO SEQRES 14 C 238 TRP ILE SER GLN THR HIS TYR ARG LEU VAL HIS GLN ASP SEQRES 15 C 238 GLU TYR THR SER ALA GLY ASN VAL THR CYS TRP TYR GLN SEQRES 16 C 238 THR GLY ILE VAL VAL PRO ALA GLY THR PRO THR LEU CYS SEQRES 17 C 238 SER ILE MET CYS PHE VAL SER ALA CYS ASN ASP PHE SER SEQRES 18 C 238 VAL ARG LEU LEU LYS ASP THR PRO PHE ILE GLU GLN SER SEQRES 19 C 238 ALA LEU LEU GLN SEQRES 1 A 287 GLY ASP VAL VAL GLU ALA ILE GLU GLY ALA VAL ALA ARG SEQRES 2 A 287 VAL ALA ASP THR ILE SER SER GLY PRO THR ASN SER GLN SEQRES 3 A 287 ALA VAL PRO ALA LEU THR ALA VAL GLU THR GLY HIS THR SEQRES 4 A 287 SER GLN VAL VAL PRO GLY ASP THR MET GLN THR ARG HIS SEQRES 5 A 287 VAL LYS ASN TYR HIS SER ARG SER GLU SER THR ILE GLU SEQRES 6 A 287 ASN PHE LEU SER ARG SER ALA CYS VAL TYR MET GLY GLU SEQRES 7 A 287 TYR TYR THR THR ASN THR ASP GLU THR LYS ARG PHE ALA SEQRES 8 A 287 SER TRP THR ILE ASN ALA ARG ARG MET VAL GLN MET ARG SEQRES 9 A 287 ARG LYS LEU GLU MET PHE THR TYR VAL ARG PHE ASP VAL SEQRES 10 A 287 GLU VAL THR PHE VAL ILE THR SER LYS GLN ASP GLN GLY SEQRES 11 A 287 THR GLN LEU GLY GLN ASP MET PRO PRO LEU THR HIS GLN SEQRES 12 A 287 ILE MET TYR ILE PRO PRO GLY GLY PRO ILE PRO LYS SER SEQRES 13 A 287 THR THR ASP TYR ALA TRP GLN THR SER THR ASN PRO SER SEQRES 14 A 287 ILE PHE TRP THR GLU GLY ASN ALA PRO PRO ARG MET SER SEQRES 15 A 287 ILE PRO PHE VAL SER ILE GLY ASN ALA TYR SER ASN PHE SEQRES 16 A 287 TYR ASP GLY TRP SER HIS PHE SER GLN ASN GLY VAL TYR SEQRES 17 A 287 GLY TYR ASN THR LEU ASN ASN MET GLY GLN LEU TYR MET SEQRES 18 A 287 ARG HIS VAL ASN GLY PRO SER PRO LEU PRO MET THR SER SEQRES 19 A 287 ILE VAL ARG VAL TYR PHE LYS PRO LYS HIS VAL LYS ALA SEQRES 20 A 287 TRP VAL PRO ARG PRO PRO ARG LEU CYS GLN TYR LYS ASN SEQRES 21 A 287 ALA SER THR VAL ASN PHE SER SER THR ASN ILE THR ASP SEQRES 22 A 287 LYS ARG ASP SER ILE THR HIS VAL PRO ASP THR VAL LYS SEQRES 23 A 287 PRO MODRES 8B9F MSE E 259 MET MODIFIED RESIDUE HET MSE E 259 8 HET SPH A 300 21 HETNAM MSE SELENOMETHIONINE HETNAM SPH SPHINGOSINE FORMUL 1 MSE C5 H11 N O2 SE FORMUL 5 SPH C18 H37 N O2 HELIX 1 AA1 PRO E 112 GLN E 116 5 5 HELIX 2 AA2 PRO B 83 LYS B 87 5 5 HELIX 3 AA3 MET B 89 HIS B 99 1 11 HELIX 4 AA4 ASN B 142 SER B 147 1 6 HELIX 5 AA5 GLY B 178 TYR B 185 5 8 HELIX 6 AA6 MET C 44 GLU C 48 1 5 HELIX 7 AA7 MET C 65 ARG C 69 5 5 HELIX 8 AA8 THR C 98 ASN C 105 1 8 HELIX 9 AA9 THR C 144 LEU C 150 1 7 HELIX 10 AB1 MET A 100 GLU A 108 1 9 SHEET 1 AA1 4 ALA E 45 PRO E 47 0 SHEET 2 AA1 4 VAL E 60 CYS E 65 -1 O LYS E 64 N GLN E 46 SHEET 3 AA1 4 SER E 78 LEU E 82 -1 O VAL E 79 N ILE E 61 SHEET 4 AA1 4 GLN E 86 TRP E 87 -1 O GLN E 86 N LEU E 82 SHEET 1 AA2 2 VAL E 70 LYS E 71 0 SHEET 2 AA2 2 CYS E 94 ASN E 95 -1 O ASN E 95 N VAL E 70 SHEET 1 AA3 3 ALA E 107 LEU E 109 0 SHEET 2 AA3 3 VAL E 124 CYS E 129 -1 O GLU E 128 N SER E 108 SHEET 3 AA3 3 LYS E 142 THR E 144 -1 O LEU E 143 N VAL E 125 SHEET 1 AA4 2 TYR E 133 ARG E 135 0 SHEET 2 AA4 2 CYS E 158 LYS E 160 -1 O LYS E 159 N ARG E 134 SHEET 1 AA5 4 GLY E 172 ASP E 175 0 SHEET 2 AA5 4 THR E 185 CYS E 190 -1 O SER E 187 N ASP E 175 SHEET 3 AA5 4 SER E 201 SER E 207 -1 O SER E 202 N ILE E 186 SHEET 4 AA5 4 SER E 210 TRP E 213 -1 O SER E 210 N SER E 207 SHEET 1 AA6 2 TYR E 194 PHE E 197 0 SHEET 2 AA6 2 GLU E 219 GLU E 222 -1 O ARG E 221 N LYS E 195 SHEET 1 AA7 4 GLY E 234 ILE E 236 0 SHEET 2 AA7 4 SER E 248 CYS E 253 -1 O ALA E 252 N ILE E 235 SHEET 3 AA7 4 SER E 264 ASN E 270 -1 O ILE E 265 N VAL E 249 SHEET 4 AA7 4 GLU E 273 TRP E 276 -1 O GLU E 275 N THR E 268 SHEET 1 AA8 2 THR E 258 ILE E 260 0 SHEET 2 AA8 2 GLU E 282 ARG E 284 -1 O GLU E 282 N ILE E 260 SHEET 1 AA9 3 TYR B 64 THR B 65 0 SHEET 2 AA9 3 VAL B 239 ASN B 253 -1 O VAL B 245 N TYR B 64 SHEET 3 AA9 3 VAL B 69 TRP B 71 -1 N VAL B 69 O ILE B 241 SHEET 1 AB1 4 TYR B 64 THR B 65 0 SHEET 2 AB1 4 VAL B 239 ASN B 253 -1 O VAL B 245 N TYR B 64 SHEET 3 AB1 4 LEU B 101 GLN B 111 -1 N HIS B 109 O THR B 244 SHEET 4 AB1 4 SER B 197 MET B 202 -1 O MET B 202 N TYR B 106 SHEET 1 AB2 5 LYS B 153 LYS B 154 0 SHEET 2 AB2 5 TRP B 78 PHE B 82 -1 N TRP B 79 O LYS B 153 SHEET 3 AB2 5 PHE B 219 ASP B 230 -1 O LEU B 221 N TRP B 80 SHEET 4 AB2 5 GLN B 119 PRO B 128 -1 N VAL B 127 O THR B 220 SHEET 5 AB2 5 HIS B 187 ASN B 191 -1 O GLN B 188 N VAL B 124 SHEET 1 AB3 3 SER C 51 VAL C 52 0 SHEET 2 AB3 3 LEU C 207 ALA C 216 -1 O VAL C 214 N SER C 51 SHEET 3 AB3 3 ILE C 70 GLN C 73 -1 N ILE C 70 O ILE C 210 SHEET 1 AB4 4 SER C 51 VAL C 52 0 SHEET 2 AB4 4 LEU C 207 ALA C 216 -1 O VAL C 214 N SER C 51 SHEET 3 AB4 4 VAL C 114 PHE C 120 -1 N THR C 117 O PHE C 213 SHEET 4 AB4 4 SER C 163 ILE C 168 -1 O ILE C 168 N VAL C 114 SHEET 1 AB5 4 PHE C 83 GLN C 86 0 SHEET 2 AB5 4 ASN C 189 VAL C 199 -1 O VAL C 190 N PHE C 85 SHEET 3 AB5 4 THR C 127 SER C 135 -1 N LEU C 131 O TRP C 193 SHEET 4 AB5 4 THR C 152 ASP C 157 -1 O THR C 152 N TYR C 134 SHEET 1 AB6 3 ARG C 177 LEU C 178 0 SHEET 2 AB6 3 TYR C 107 SER C 111 -1 N TRP C 110 O ARG C 177 SHEET 3 AB6 3 SER C 221 LEU C 225 -1 O SER C 221 N SER C 111 SHEET 1 AB7 2 PHE A 110 TYR A 112 0 SHEET 2 AB7 2 TRP A 248 PRO A 250 -1 O TRP A 248 N TYR A 112 SSBOND 1 CYS E 36 CYS E 81 1555 1555 2.03 SSBOND 2 CYS E 65 CYS E 94 1555 1555 2.03 SSBOND 3 CYS E 98 CYS E 145 1555 1555 2.03 SSBOND 4 CYS E 129 CYS E 158 1555 1555 2.04 SSBOND 5 CYS E 163 CYS E 204 1555 1555 2.03 SSBOND 6 CYS E 190 CYS E 220 1555 1555 2.03 SSBOND 7 CYS E 225 CYS E 267 1555 1555 2.02 SSBOND 8 CYS E 253 CYS E 283 1555 1555 2.04 LINK C THR E 258 N MSE E 259 1555 1555 1.33 LINK C MSE E 259 N ILE E 260 1555 1555 1.33 CISPEP 1 GLN E 111 PRO E 112 0 4.87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000