data_8B9Q # _entry.id 8B9Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8B9Q pdb_00008b9q 10.2210/pdb8b9q/pdb WWPDB D_1292125856 ? ? BMRB 34762 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Molecular structure of Cu(II)-bound amyloid-beta monomer implicated in inhibition of peptide self-assembly in Alzheimer's disease ; _pdbx_database_related.db_id 34762 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8B9Q _pdbx_database_status.recvd_initial_deposition_date 2022-10-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Abelein, A.' 1 0000-0002-8079-3017 'Ciofi-Baffoni, S.' 2 ? 'Kumar, R.' 3 ? 'Giachetti, A.' 4 ? 'Piccioli, M.' 5 ? 'Biverstal, H.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Jacs Au' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2691-3704 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first 2571 _citation.page_last 2584 _citation.title ;Molecular Structure of Cu(II)-Bound Amyloid-beta Monomer Implicated in Inhibition of Peptide Self-Assembly in Alzheimer's Disease. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacsau.2c00438 _citation.pdbx_database_id_PubMed 36465548 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abelein, A.' 1 0000-0002-8079-3017 primary 'Ciofi-Baffoni, S.' 2 0000-0002-2376-3321 primary 'Morman, C.' 3 ? primary 'Kumar, R.' 4 ? primary 'Giachetti, A.' 5 ? primary 'Piccioli, M.' 6 0000-0001-9882-9754 primary 'Biverstal, H.' 7 0000-0002-2097-7658 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Amyloid-beta A4 protein' 4335.852 1 ? ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_seq_one_letter_code_can DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 ASP n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLU n 1 23 ASP n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 40 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B4DM00_HUMAN _struct_ref.pdbx_db_accession B4DM00 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _struct_ref.pdbx_align_begin 430 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8B9Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 40 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B4DM00 _struct_ref_seq.db_align_beg 430 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 469 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '2D 1H-13C HSQC' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 281 _pdbx_nmr_exptl_sample_conditions.pressure_units mbar _pdbx_nmr_exptl_sample_conditions.pressure 1013,25 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details '75 microM Abeta40 in 10 mM HEPES, 10% D2O, pH 7.2, 100 microM Cu(II)' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10 mM no HEPES, 10 % D2 D2O, 100 uM no copper, 75 uM [U-100% 13C; U-100% 15N] amyloid beta, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 13C15N_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '75 microM Abeta40 in 10 mM HEPES, 10% D2O, pH 7.2, 100 microM Cu(II)' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 950 'TCI cryogenic probe' 2 AVANCE ? Bruker 700 'TXO cryogenic probe' # _pdbx_nmr_refine.entry_id 8B9Q _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 8B9Q _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8B9Q _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'structure calculation' CYANA 3.98.13 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee, Tonelli and Markley' 4 'peak picking' NMRFAM-SPARKY ? 'Lee, Tonelli and Markley' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8B9Q _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8B9Q _struct.title ;Molecular structure of Cu(II)-bound amyloid-beta monomer implicated in inhibition of peptide self-assembly in Alzheimer's disease ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8B9Q _struct_keywords.text ;Amyloid-beta peptide, Alzheimer's disease, copper ion, paramagnetic NMR, aggregation kinetics, METAL BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 1 N ? ? ? 1_555 B CU . CU ? ? A ASP 1 A CU 101 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc2 metalc ? ? A ASP 1 O ? ? ? 1_555 B CU . CU ? ? A ASP 1 A CU 101 1_555 ? ? ? ? ? ? ? 2.151 ? ? metalc3 metalc ? ? A HIS 6 NE2 ? ? ? 1_555 B CU . CU ? ? A HIS 6 A CU 101 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc4 metalc ? ? A HIS 13 ND1 ? ? ? 1_555 B CU . CU ? ? A HIS 13 A CU 101 1_555 ? ? ? ? ? ? ? 2.144 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8B9Q _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CU H N O U # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 VAL 24 24 ? ? ? A . n A 1 25 GLY 25 25 ? ? ? A . n A 1 26 SER 26 26 ? ? ? A . n A 1 27 ASN 27 27 ? ? ? A . n A 1 28 LYS 28 28 ? ? ? A . n A 1 29 GLY 29 29 ? ? ? A . n A 1 30 ALA 30 30 ? ? ? A . n A 1 31 ILE 31 31 ? ? ? A . n A 1 32 ILE 32 32 ? ? ? A . n A 1 33 GLY 33 33 ? ? ? A . n A 1 34 LEU 34 34 ? ? ? A . n A 1 35 MET 35 35 ? ? ? A . n A 1 36 VAL 36 36 ? ? ? A . n A 1 37 GLY 37 37 ? ? ? A . n A 1 38 GLY 38 38 ? ? ? A . n A 1 39 VAL 39 39 ? ? ? A . n A 1 40 VAL 40 40 ? ? ? A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email axel.abelein@ki.se _pdbx_contact_author.name_first Axel _pdbx_contact_author.name_last Abelein _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8079-3017 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CU _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 24 _pdbx_nonpoly_scheme.pdb_mon_id CU _pdbx_nonpoly_scheme.auth_mon_id CU2 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A ASP 1 ? A ASP 1 ? 1_555 CU ? B CU . ? A CU 101 ? 1_555 O ? A ASP 1 ? A ASP 1 ? 1_555 80.2 ? 2 N ? A ASP 1 ? A ASP 1 ? 1_555 CU ? B CU . ? A CU 101 ? 1_555 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 169.5 ? 3 O ? A ASP 1 ? A ASP 1 ? 1_555 CU ? B CU . ? A CU 101 ? 1_555 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 93.1 ? 4 N ? A ASP 1 ? A ASP 1 ? 1_555 CU ? B CU . ? A CU 101 ? 1_555 ND1 ? A HIS 13 ? A HIS 13 ? 1_555 84.7 ? 5 O ? A ASP 1 ? A ASP 1 ? 1_555 CU ? B CU . ? A CU 101 ? 1_555 ND1 ? A HIS 13 ? A HIS 13 ? 1_555 157.0 ? 6 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 CU ? B CU . ? A CU 101 ? 1_555 ND1 ? A HIS 13 ? A HIS 13 ? 1_555 104.0 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-02-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 HEPES 10 ? mM no 1 D2O 10 ? % D2 1 copper 100 ? uM no 1 'amyloid beta' 75 ? uM '[U-100% 13C; U-100% 15N]' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 124.00 120.30 3.70 0.50 N 2 2 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.53 120.30 3.23 0.50 N 3 5 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.43 120.30 3.13 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 4 ? ? -85.94 49.11 2 1 ARG A 5 ? ? -66.64 78.28 3 1 SER A 8 ? ? 59.96 -19.93 4 1 TYR A 10 ? ? -154.24 31.91 5 1 GLU A 11 ? ? -129.38 -61.74 6 1 VAL A 12 ? ? -89.77 47.46 7 1 HIS A 13 ? ? -59.20 75.15 8 1 GLN A 15 ? ? 62.06 148.72 9 1 LYS A 16 ? ? 55.58 -66.77 10 1 PHE A 20 ? ? -158.18 -70.98 11 2 ALA A 2 ? ? -87.24 -110.27 12 2 GLU A 3 ? ? -59.65 -1.09 13 2 ARG A 5 ? ? -159.17 -37.00 14 2 HIS A 6 ? ? -153.48 -149.96 15 2 ASP A 7 ? ? -156.09 -92.73 16 2 TYR A 10 ? ? -59.11 -9.19 17 2 VAL A 12 ? ? 63.27 82.66 18 2 LEU A 17 ? ? 37.82 67.73 19 2 ALA A 21 ? ? 61.10 -31.77 20 3 ALA A 2 ? ? 72.65 157.99 21 3 PHE A 4 ? ? -64.45 64.48 22 3 HIS A 6 ? ? -67.85 33.48 23 3 PHE A 20 ? ? -152.32 53.85 24 3 GLU A 22 ? ? 59.56 -19.48 25 4 ALA A 2 ? ? -144.40 -2.40 26 4 HIS A 6 ? ? -156.39 -54.74 27 4 SER A 8 ? ? 65.40 177.74 28 4 TYR A 10 ? ? -67.43 26.34 29 4 VAL A 12 ? ? -71.69 47.83 30 4 HIS A 14 ? ? 51.45 147.08 31 4 PHE A 20 ? ? -141.03 55.40 32 4 GLU A 22 ? ? -138.61 -43.98 33 5 ALA A 2 ? ? -67.56 -152.85 34 5 GLU A 3 ? ? 63.73 -24.17 35 5 ARG A 5 ? ? 27.43 88.21 36 5 HIS A 6 ? ? -142.05 -89.54 37 5 TYR A 10 ? ? -72.65 -78.02 38 5 GLU A 11 ? ? 54.01 145.60 39 5 HIS A 13 ? ? -157.33 -60.56 40 5 HIS A 14 ? ? -155.36 -111.87 41 5 GLN A 15 ? ? -159.08 -37.30 42 5 VAL A 18 ? ? -151.76 -17.94 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 HIS A 13 ? ? HIS A 14 ? ? 139.33 2 2 HIS A 6 ? ? ASP A 7 ? ? 148.48 3 3 HIS A 6 ? ? ASP A 7 ? ? -136.50 4 4 HIS A 13 ? ? HIS A 14 ? ? -137.36 5 5 ARG A 5 ? ? HIS A 6 ? ? -140.29 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 3 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 10 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.066 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 24 ? A VAL 24 2 1 Y 1 A GLY 25 ? A GLY 25 3 1 Y 1 A SER 26 ? A SER 26 4 1 Y 1 A ASN 27 ? A ASN 27 5 1 Y 1 A LYS 28 ? A LYS 28 6 1 Y 1 A GLY 29 ? A GLY 29 7 1 Y 1 A ALA 30 ? A ALA 30 8 1 Y 1 A ILE 31 ? A ILE 31 9 1 Y 1 A ILE 32 ? A ILE 32 10 1 Y 1 A GLY 33 ? A GLY 33 11 1 Y 1 A LEU 34 ? A LEU 34 12 1 Y 1 A MET 35 ? A MET 35 13 1 Y 1 A VAL 36 ? A VAL 36 14 1 Y 1 A GLY 37 ? A GLY 37 15 1 Y 1 A GLY 38 ? A GLY 38 16 1 Y 1 A VAL 39 ? A VAL 39 17 1 Y 1 A VAL 40 ? A VAL 40 18 2 Y 1 A VAL 24 ? A VAL 24 19 2 Y 1 A GLY 25 ? A GLY 25 20 2 Y 1 A SER 26 ? A SER 26 21 2 Y 1 A ASN 27 ? A ASN 27 22 2 Y 1 A LYS 28 ? A LYS 28 23 2 Y 1 A GLY 29 ? A GLY 29 24 2 Y 1 A ALA 30 ? A ALA 30 25 2 Y 1 A ILE 31 ? A ILE 31 26 2 Y 1 A ILE 32 ? A ILE 32 27 2 Y 1 A GLY 33 ? A GLY 33 28 2 Y 1 A LEU 34 ? A LEU 34 29 2 Y 1 A MET 35 ? A MET 35 30 2 Y 1 A VAL 36 ? A VAL 36 31 2 Y 1 A GLY 37 ? A GLY 37 32 2 Y 1 A GLY 38 ? A GLY 38 33 2 Y 1 A VAL 39 ? A VAL 39 34 2 Y 1 A VAL 40 ? A VAL 40 35 3 Y 1 A VAL 24 ? A VAL 24 36 3 Y 1 A GLY 25 ? A GLY 25 37 3 Y 1 A SER 26 ? A SER 26 38 3 Y 1 A ASN 27 ? A ASN 27 39 3 Y 1 A LYS 28 ? A LYS 28 40 3 Y 1 A GLY 29 ? A GLY 29 41 3 Y 1 A ALA 30 ? A ALA 30 42 3 Y 1 A ILE 31 ? A ILE 31 43 3 Y 1 A ILE 32 ? A ILE 32 44 3 Y 1 A GLY 33 ? A GLY 33 45 3 Y 1 A LEU 34 ? A LEU 34 46 3 Y 1 A MET 35 ? A MET 35 47 3 Y 1 A VAL 36 ? A VAL 36 48 3 Y 1 A GLY 37 ? A GLY 37 49 3 Y 1 A GLY 38 ? A GLY 38 50 3 Y 1 A VAL 39 ? A VAL 39 51 3 Y 1 A VAL 40 ? A VAL 40 52 4 Y 1 A VAL 24 ? A VAL 24 53 4 Y 1 A GLY 25 ? A GLY 25 54 4 Y 1 A SER 26 ? A SER 26 55 4 Y 1 A ASN 27 ? A ASN 27 56 4 Y 1 A LYS 28 ? A LYS 28 57 4 Y 1 A GLY 29 ? A GLY 29 58 4 Y 1 A ALA 30 ? A ALA 30 59 4 Y 1 A ILE 31 ? A ILE 31 60 4 Y 1 A ILE 32 ? A ILE 32 61 4 Y 1 A GLY 33 ? A GLY 33 62 4 Y 1 A LEU 34 ? A LEU 34 63 4 Y 1 A MET 35 ? A MET 35 64 4 Y 1 A VAL 36 ? A VAL 36 65 4 Y 1 A GLY 37 ? A GLY 37 66 4 Y 1 A GLY 38 ? A GLY 38 67 4 Y 1 A VAL 39 ? A VAL 39 68 4 Y 1 A VAL 40 ? A VAL 40 69 5 Y 1 A VAL 24 ? A VAL 24 70 5 Y 1 A GLY 25 ? A GLY 25 71 5 Y 1 A SER 26 ? A SER 26 72 5 Y 1 A ASN 27 ? A ASN 27 73 5 Y 1 A LYS 28 ? A LYS 28 74 5 Y 1 A GLY 29 ? A GLY 29 75 5 Y 1 A ALA 30 ? A ALA 30 76 5 Y 1 A ILE 31 ? A ILE 31 77 5 Y 1 A ILE 32 ? A ILE 32 78 5 Y 1 A GLY 33 ? A GLY 33 79 5 Y 1 A LEU 34 ? A LEU 34 80 5 Y 1 A MET 35 ? A MET 35 81 5 Y 1 A VAL 36 ? A VAL 36 82 5 Y 1 A GLY 37 ? A GLY 37 83 5 Y 1 A GLY 38 ? A GLY 38 84 5 Y 1 A VAL 39 ? A VAL 39 85 5 Y 1 A VAL 40 ? A VAL 40 # _pdbx_audit_support.funding_organization iNEXT _pdbx_audit_support.country 'European Union' _pdbx_audit_support.grant_number 1677 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'COPPER (II) ION' _pdbx_entity_nonpoly.comp_id CU # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #