HEADER DNA BINDING PROTEIN 11-OCT-22 8BAO TITLE DYSGONAMONADACEAE BACTERIUM CRISPR ANCILLARY NUCLEASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUF1887 FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYCLIC TETRA-ADENYLATE (CA4); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DYSGONAMONADACEAE BACTERIUM; SOURCE 3 ORGANISM_TAXID: 2065189; SOURCE 4 GENE: C0T31_04800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS NUCLEASE, HOMODIMER, CAN2, CRISPR ANCILLARY NUCLEASE, CYCLIC TETRA- KEYWDS 2 ADENYLATE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.W.H.LI,A.J.DOHERTY REVDAT 4 01-MAY-24 8BAO 1 REMARK REVDAT 3 23-AUG-23 8BAO 1 JRNL REMARK REVDAT 2 19-JUL-23 8BAO 1 JRNL REMARK REVDAT 1 30-NOV-22 8BAO 0 JRNL AUTH M.ZABRADY,K.ZABRADY,A.W.H.LI,A.J.DOHERTY JRNL TITL REVERSE TRANSCRIPTASES PRIME DNA SYNTHESIS. JRNL REF NUCLEIC ACIDS RES. V. 51 7125 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37279911 JRNL DOI 10.1093/NAR/GKAD478 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 63608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.7100 - 5.7700 1.00 2795 163 0.2140 0.2173 REMARK 3 2 5.7600 - 4.5800 1.00 2807 140 0.2039 0.2309 REMARK 3 3 4.5800 - 4.0000 1.00 2780 140 0.1851 0.2122 REMARK 3 4 4.0000 - 3.6300 1.00 2751 146 0.1989 0.1987 REMARK 3 5 3.6300 - 3.3700 1.00 2764 140 0.1972 0.2627 REMARK 3 6 3.3700 - 3.1700 1.00 2727 152 0.2072 0.2354 REMARK 3 7 3.1700 - 3.0100 1.00 2761 141 0.2163 0.2772 REMARK 3 8 3.0100 - 2.8800 1.00 2732 149 0.2154 0.2294 REMARK 3 9 2.8800 - 2.7700 1.00 2782 153 0.2184 0.2843 REMARK 3 10 2.7700 - 2.6800 1.00 2748 141 0.2283 0.2713 REMARK 3 11 2.6800 - 2.5900 1.00 2763 130 0.2412 0.3364 REMARK 3 12 2.5900 - 2.5200 1.00 2762 131 0.2368 0.3069 REMARK 3 13 2.5200 - 2.4500 1.00 2739 153 0.2443 0.3271 REMARK 3 14 2.4500 - 2.3900 1.00 2736 157 0.2480 0.2792 REMARK 3 15 2.3900 - 2.3400 1.00 2731 138 0.2559 0.2845 REMARK 3 16 2.3400 - 2.2900 1.00 2760 149 0.2605 0.3201 REMARK 3 17 2.2900 - 2.2400 1.00 2754 139 0.2687 0.3481 REMARK 3 18 2.2400 - 2.2000 1.00 2766 124 0.2808 0.3470 REMARK 3 19 2.2000 - 2.1600 1.00 2726 123 0.2752 0.3221 REMARK 3 20 2.1600 - 2.1200 0.99 2744 141 0.2938 0.3491 REMARK 3 21 2.1200 - 2.0900 0.98 2712 137 0.3033 0.3534 REMARK 3 22 2.0900 - 2.0600 0.97 2642 139 0.3069 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.319 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6228 REMARK 3 ANGLE : 0.954 8427 REMARK 3 CHIRALITY : 0.058 923 REMARK 3 PLANARITY : 0.007 1080 REMARK 3 DIHEDRAL : 8.017 848 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.4834 12.2656 18.6109 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.2761 REMARK 3 T33: 0.2641 T12: -0.0135 REMARK 3 T13: -0.0085 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.8045 L22: 0.9457 REMARK 3 L33: 0.1577 L12: -0.3882 REMARK 3 L13: -0.3547 L23: 0.2005 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: 0.0131 S13: 0.0926 REMARK 3 S21: 0.0310 S22: -0.0165 S23: -0.0392 REMARK 3 S31: -0.0176 S32: 0.0028 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6772 -13.6407 10.1721 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.3458 REMARK 3 T33: 0.2890 T12: 0.0161 REMARK 3 T13: 0.0398 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0004 L22: 0.0288 REMARK 3 L33: 0.0099 L12: -0.0058 REMARK 3 L13: 0.0027 L23: -0.0175 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: -0.1591 S13: -0.2737 REMARK 3 S21: 0.2966 S22: 0.1048 S23: -0.1351 REMARK 3 S31: 0.0145 S32: -0.1526 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5261 -28.3616 16.9116 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.3068 REMARK 3 T33: 0.3176 T12: 0.0209 REMARK 3 T13: 0.0086 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.2055 L22: 0.4664 REMARK 3 L33: 0.5792 L12: 0.2292 REMARK 3 L13: 0.1709 L23: -0.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.0438 S13: -0.1130 REMARK 3 S21: 0.0582 S22: -0.0229 S23: -0.0012 REMARK 3 S31: 0.0708 S32: 0.0096 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.5573 -7.4095 -9.1032 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.3254 REMARK 3 T33: 0.2917 T12: 0.0004 REMARK 3 T13: -0.0317 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.9475 L22: 0.5164 REMARK 3 L33: 0.3437 L12: -0.5888 REMARK 3 L13: 0.4228 L23: -0.3849 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0786 S13: -0.0326 REMARK 3 S21: -0.0896 S22: -0.0029 S23: 0.0724 REMARK 3 S31: 0.0811 S32: 0.0206 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6755 -9.0209 10.2052 REMARK 3 T TENSOR REMARK 3 T11: 0.2545 T22: 0.3726 REMARK 3 T33: 0.3862 T12: -0.0037 REMARK 3 T13: -0.0051 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.6636 L22: 1.0404 REMARK 3 L33: 0.6326 L12: 0.3481 REMARK 3 L13: -0.3955 L23: 0.1119 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.0048 S13: 0.0736 REMARK 3 S21: 0.0025 S22: 0.0139 S23: -0.2738 REMARK 3 S31: -0.0702 S32: 0.1720 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.058 REMARK 200 RESOLUTION RANGE LOW (A) : 54.715 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.24000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE; MES MONOHYDRATE (ACID) REMARK 280 0.03M SODIUM FLUORIDE; 0.03M SODIUM BROMIDE; 0.03M SODIUM IODIDE REMARK 280 20% V/V GLYCEROL; 10% W/V PEG 4000 208.3UM CA4, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.56650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.71450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.56650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.71450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 657 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 P A C 1 O3' A C 4 1.57 REMARK 500 O HOH A 613 O HOH A 645 1.91 REMARK 500 N MET B 1 O HOH B 501 1.93 REMARK 500 O HOH A 625 O HOH A 627 1.93 REMARK 500 O CYS A 288 O HOH A 501 1.96 REMARK 500 NE2 GLN A 206 O HOH A 502 1.97 REMARK 500 O HOH A 653 O HOH A 660 1.99 REMARK 500 OE1 GLN B 136 O HOH B 502 2.01 REMARK 500 NE ARG A 263 O HOH A 503 2.07 REMARK 500 ND2 ASN A 185 O HOH A 504 2.08 REMARK 500 O HOH A 638 O HOH A 646 2.12 REMARK 500 O HOH B 648 O HOH B 649 2.13 REMARK 500 O ASN A 104 O HOH A 505 2.14 REMARK 500 O ASN B 104 O HOH B 503 2.17 REMARK 500 NH1 ARG A 69 O HOH A 506 2.17 REMARK 500 OD1 ASP B 26 O HOH B 504 2.18 REMARK 500 OD1 ASP B 77 O HOH B 505 2.18 REMARK 500 OE2 GLU A 146 O HOH A 503 2.18 REMARK 500 O THR A 227 O HOH A 507 2.19 REMARK 500 O HOH B 619 O HOH B 642 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 216 NE2 GLN B 218 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 131 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 A C 2 O5' - P - OP1 ANGL. DEV. = -8.5 DEGREES REMARK 500 A C 2 O5' - P - OP2 ANGL. DEV. = 11.0 DEGREES REMARK 500 A C 4 O5' - P - OP1 ANGL. DEV. = -9.2 DEGREES REMARK 500 A C 4 O5' - P - OP2 ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 128 46.48 -103.83 REMARK 500 LEU A 144 79.23 -104.25 REMARK 500 ASP A 171 99.71 -165.67 REMARK 500 GLU A 255 137.60 -170.16 REMARK 500 ASN A 349 37.86 -153.07 REMARK 500 ASN B 24 70.04 50.37 REMARK 500 ASP B 77 77.57 -114.89 REMARK 500 ASN B 104 57.32 -100.05 REMARK 500 ASN B 128 33.46 -93.85 REMARK 500 LEU B 144 79.76 -101.73 REMARK 500 ASP B 171 101.99 -165.29 REMARK 500 ASN B 185 71.75 -114.23 REMARK 500 ASN B 214 -158.22 -102.17 REMARK 500 GLU B 255 138.12 -173.66 REMARK 500 ASN B 349 30.13 -141.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 661 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 657 DISTANCE = 6.49 ANGSTROMS DBREF1 8BAO A 1 367 UNP A0A2N4S908_9BACT DBREF2 8BAO A A0A2N4S908 1 367 DBREF1 8BAO B 1 367 UNP A0A2N4S908_9BACT DBREF2 8BAO B A0A2N4S908 1 367 DBREF 8BAO C 1 4 PDB 8BAO 8BAO 1 4 SEQADV 8BAO MET A -19 UNP A0A2N4S90 INITIATING METHIONINE SEQADV 8BAO GLY A -18 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER A -17 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER A -16 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS A -15 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS A -14 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS A -13 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS A -12 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS A -11 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS A -10 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER A -9 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER A -8 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO GLY A -7 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO LEU A -6 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO VAL A -5 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO PRO A -4 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO ARG A -3 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO GLY A -2 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER A -1 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS A 0 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO MET B -19 UNP A0A2N4S90 INITIATING METHIONINE SEQADV 8BAO GLY B -18 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER B -17 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER B -16 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS B -15 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS B -14 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS B -13 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS B -12 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS B -11 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS B -10 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER B -9 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER B -8 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO GLY B -7 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO LEU B -6 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO VAL B -5 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO PRO B -4 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO ARG B -3 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO GLY B -2 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO SER B -1 UNP A0A2N4S90 EXPRESSION TAG SEQADV 8BAO HIS B 0 UNP A0A2N4S90 EXPRESSION TAG SEQRES 1 A 387 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 387 LEU VAL PRO ARG GLY SER HIS MET SER HIS VAL GLN ILE SEQRES 3 A 387 THR LEU VAL GLY GLY GLN ALA ALA PRO VAL TYR ASN GLY SEQRES 4 A 387 ILE THR TYR TYR ASN PRO ASP LYS VAL ILE LEU VAL CYS SEQRES 5 A 387 SER LYS GLN THR GLN ASN GLU ALA MET ARG ILE LYS ALA SEQRES 6 A 387 GLU PHE PRO ASP ILE ALA GLU ILE LYS VAL MET ASP PRO SEQRES 7 A 387 VAL ASN ILE ALA GLU ILE VAL SER GLU THR ARG ALA LEU SEQRES 8 A 387 ALA ASP SER MET PRO ASP ASP GLU ILE TYR VAL ASN ILE SEQRES 9 A 387 SER GLY GLY THR LYS SER TRP ALA PHE TYR PHE SER ARG SEQRES 10 A 387 ILE PHE SER GLU ARG SER ASN THR LYS ILE PHE TYR ILE SEQRES 11 A 387 ASP GLN ASN ASN THR ILE TRP ASN PHE THR ASP GLN THR SEQRES 12 A 387 HIS SER GLN ALA ASN PHE ASP LEU ASN LEU ASP VAL GLN SEQRES 13 A 387 PHE ARG LEU TYR GLY ASN SER LEU LYS GLU TYR LYS LEU SEQRES 14 A 387 VAL SER ASP PHE ALA ASP ASP ASP LEU THR ILE ILE PRO SEQRES 15 A 387 LYS ILE TYR LYS ILE ARG SER PHE ASP LYS ARG ASN PHE SEQRES 16 A 387 GLY LYS LEU MET ASN LEU TYR SER GLU ASN SER GLU ASN SEQRES 17 A 387 VAL PHE PHE ASP LEU ASP ASN GLY SER TYR LEU ARG TRP SEQRES 18 A 387 ASP ASN GLU GLN GLN LEU PHE GLU ILE ASN ILE ARG ASN SEQRES 19 A 387 ARG ASP GLY GLN SER LYS HIS GLU ILE LEU LYS SER THR SEQRES 20 A 387 HIS ILE ARG ARG LEU LEU ARG ASN TYR THR TRP LEU GLU SEQRES 21 A 387 LEU GLU ILE ALA ARG VAL LEU SER GLY TRP LYS PHE ALA SEQRES 22 A 387 LYS GLU VAL ARG LEU ASN GLY ILE PHE ARG ASP LYS HIS SEQRES 23 A 387 GLU ASN ALA LYS ASN GLU ILE ASP CYS ILE VAL ASN LEU SEQRES 24 A 387 GLY ASN LYS ILE LEU PHE VAL GLU CYS LYS SER HIS ILE SEQRES 25 A 387 THR ASN ILE THR ASP ILE ASP LYS PHE LYS ASN ALA VAL SEQRES 26 A 387 LYS VAL TYR GLY GLY SER GLY CYS LYS ALA LEU PHE THR SEQRES 27 A 387 THR ILE ASP PRO ILE ARG ASN ASP ALA LEU GLU LYS CYS SEQRES 28 A 387 ARG ASP SER ASN ILE ILE PRO PHE CYS ILE GLU LYS ASN SEQRES 29 A 387 GLY GLY ILE ASN ASN TYR LYS SER ASN LEU PHE GLU ILE SEQRES 30 A 387 LEU GLU LYS GLU ILE LEU ASN ILE ASN PRO SEQRES 1 B 387 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 387 LEU VAL PRO ARG GLY SER HIS MET SER HIS VAL GLN ILE SEQRES 3 B 387 THR LEU VAL GLY GLY GLN ALA ALA PRO VAL TYR ASN GLY SEQRES 4 B 387 ILE THR TYR TYR ASN PRO ASP LYS VAL ILE LEU VAL CYS SEQRES 5 B 387 SER LYS GLN THR GLN ASN GLU ALA MET ARG ILE LYS ALA SEQRES 6 B 387 GLU PHE PRO ASP ILE ALA GLU ILE LYS VAL MET ASP PRO SEQRES 7 B 387 VAL ASN ILE ALA GLU ILE VAL SER GLU THR ARG ALA LEU SEQRES 8 B 387 ALA ASP SER MET PRO ASP ASP GLU ILE TYR VAL ASN ILE SEQRES 9 B 387 SER GLY GLY THR LYS SER TRP ALA PHE TYR PHE SER ARG SEQRES 10 B 387 ILE PHE SER GLU ARG SER ASN THR LYS ILE PHE TYR ILE SEQRES 11 B 387 ASP GLN ASN ASN THR ILE TRP ASN PHE THR ASP GLN THR SEQRES 12 B 387 HIS SER GLN ALA ASN PHE ASP LEU ASN LEU ASP VAL GLN SEQRES 13 B 387 PHE ARG LEU TYR GLY ASN SER LEU LYS GLU TYR LYS LEU SEQRES 14 B 387 VAL SER ASP PHE ALA ASP ASP ASP LEU THR ILE ILE PRO SEQRES 15 B 387 LYS ILE TYR LYS ILE ARG SER PHE ASP LYS ARG ASN PHE SEQRES 16 B 387 GLY LYS LEU MET ASN LEU TYR SER GLU ASN SER GLU ASN SEQRES 17 B 387 VAL PHE PHE ASP LEU ASP ASN GLY SER TYR LEU ARG TRP SEQRES 18 B 387 ASP ASN GLU GLN GLN LEU PHE GLU ILE ASN ILE ARG ASN SEQRES 19 B 387 ARG ASP GLY GLN SER LYS HIS GLU ILE LEU LYS SER THR SEQRES 20 B 387 HIS ILE ARG ARG LEU LEU ARG ASN TYR THR TRP LEU GLU SEQRES 21 B 387 LEU GLU ILE ALA ARG VAL LEU SER GLY TRP LYS PHE ALA SEQRES 22 B 387 LYS GLU VAL ARG LEU ASN GLY ILE PHE ARG ASP LYS HIS SEQRES 23 B 387 GLU ASN ALA LYS ASN GLU ILE ASP CYS ILE VAL ASN LEU SEQRES 24 B 387 GLY ASN LYS ILE LEU PHE VAL GLU CYS LYS SER HIS ILE SEQRES 25 B 387 THR ASN ILE THR ASP ILE ASP LYS PHE LYS ASN ALA VAL SEQRES 26 B 387 LYS VAL TYR GLY GLY SER GLY CYS LYS ALA LEU PHE THR SEQRES 27 B 387 THR ILE ASP PRO ILE ARG ASN ASP ALA LEU GLU LYS CYS SEQRES 28 B 387 ARG ASP SER ASN ILE ILE PRO PHE CYS ILE GLU LYS ASN SEQRES 29 B 387 GLY GLY ILE ASN ASN TYR LYS SER ASN LEU PHE GLU ILE SEQRES 30 B 387 LEU GLU LYS GLU ILE LEU ASN ILE ASN PRO SEQRES 1 C 4 A A A A HET BR A 401 1 HET BR A 402 1 HET GOL A 403 6 HET GOL B 401 6 HETNAM BR BROMIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 BR 2(BR 1-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *327(H2 O) HELIX 1 AA1 GLN A 12 ASN A 24 1 13 HELIX 2 AA2 THR A 36 PHE A 47 1 12 HELIX 3 AA3 ASN A 60 SER A 74 1 15 HELIX 4 AA4 THR A 88 SER A 100 1 13 HELIX 5 AA5 ASN A 132 TYR A 140 1 9 HELIX 6 AA6 LEU A 149 PHE A 153 5 5 HELIX 7 AA7 ALA A 154 ILE A 160 1 7 HELIX 8 AA8 ILE A 160 ASP A 171 1 12 HELIX 9 AA9 ASP A 171 ASN A 185 1 15 HELIX 10 AB1 HIS A 228 LEU A 233 1 6 HELIX 11 AB2 TYR A 236 GLY A 249 1 14 HELIX 12 AB3 THR A 296 GLY A 309 1 14 HELIX 13 AB4 ARG A 324 SER A 334 1 11 HELIX 14 AB5 GLU A 342 GLY A 345 5 4 HELIX 15 AB6 TYR A 350 ILE A 362 1 13 HELIX 16 AB7 GLN B 12 ASN B 24 1 13 HELIX 17 AB8 THR B 36 PHE B 47 1 12 HELIX 18 AB9 ASN B 60 SER B 74 1 15 HELIX 19 AC1 THR B 88 SER B 100 1 13 HELIX 20 AC2 ASN B 132 TYR B 140 1 9 HELIX 21 AC3 LEU B 149 PHE B 153 5 5 HELIX 22 AC4 ALA B 154 ILE B 160 1 7 HELIX 23 AC5 ILE B 160 ASP B 171 1 12 HELIX 24 AC6 ASP B 171 ASN B 185 1 15 HELIX 25 AC7 HIS B 228 LEU B 233 1 6 HELIX 26 AC8 TYR B 236 GLY B 249 1 14 HELIX 27 AC9 THR B 296 GLY B 309 1 14 HELIX 28 AD1 ARG B 324 SER B 334 1 11 HELIX 29 AD2 GLU B 342 GLY B 345 5 4 HELIX 30 AD3 TYR B 350 ILE B 362 1 13 SHEET 1 AA1 7 ALA A 51 VAL A 55 0 SHEET 2 AA1 7 LYS A 27 CYS A 32 1 N LEU A 30 O GLU A 52 SHEET 3 AA1 7 HIS A 3 LEU A 8 1 N THR A 7 O ILE A 29 SHEET 4 AA1 7 GLU A 79 ASN A 83 1 O GLU A 79 N VAL A 4 SHEET 5 AA1 7 THR A 105 ILE A 110 1 O PHE A 108 N VAL A 82 SHEET 6 AA1 7 THR A 115 ASN A 118 -1 O TRP A 117 N TYR A 109 SHEET 7 AA1 7 THR A 123 GLN A 126 -1 O THR A 123 N ASN A 118 SHEET 1 AA2 6 GLU A 146 LYS A 148 0 SHEET 2 AA2 6 GLU A 255 ARG A 263 -1 O LEU A 258 N LYS A 148 SHEET 3 AA2 6 ALA A 269 ASN A 278 -1 O LYS A 270 N PHE A 262 SHEET 4 AA2 6 ILE A 283 LYS A 289 -1 O LEU A 284 N VAL A 277 SHEET 5 AA2 6 LYS A 314 THR A 319 1 O LEU A 316 N PHE A 285 SHEET 6 AA2 6 ILE A 337 CYS A 340 1 O ILE A 337 N ALA A 315 SHEET 1 AA3 4 PHE A 190 ASP A 192 0 SHEET 2 AA3 4 TYR A 198 ASP A 202 -1 O LEU A 199 N PHE A 191 SHEET 3 AA3 4 LEU A 207 ARG A 213 -1 O GLU A 209 N ARG A 200 SHEET 4 AA3 4 SER A 219 LEU A 224 -1 O LYS A 220 N ILE A 212 SHEET 1 AA4 7 ALA B 51 VAL B 55 0 SHEET 2 AA4 7 LYS B 27 CYS B 32 1 N LEU B 30 O GLU B 52 SHEET 3 AA4 7 HIS B 3 LEU B 8 1 N GLN B 5 O LYS B 27 SHEET 4 AA4 7 GLU B 79 ASN B 83 1 O TYR B 81 N ILE B 6 SHEET 5 AA4 7 THR B 105 ILE B 110 1 O PHE B 108 N VAL B 82 SHEET 6 AA4 7 THR B 115 ASN B 118 -1 O TRP B 117 N TYR B 109 SHEET 7 AA4 7 THR B 123 GLN B 126 -1 O THR B 123 N ASN B 118 SHEET 1 AA5 6 GLU B 146 LYS B 148 0 SHEET 2 AA5 6 GLU B 255 ARG B 263 -1 O LEU B 258 N LYS B 148 SHEET 3 AA5 6 ALA B 269 ASN B 278 -1 O LYS B 270 N PHE B 262 SHEET 4 AA5 6 ILE B 283 LYS B 289 -1 O LEU B 284 N VAL B 277 SHEET 5 AA5 6 LYS B 314 THR B 319 1 O LYS B 314 N PHE B 285 SHEET 6 AA5 6 ILE B 337 CYS B 340 1 O ILE B 337 N PHE B 317 SHEET 1 AA6 4 PHE B 190 ASP B 192 0 SHEET 2 AA6 4 TYR B 198 ASP B 202 -1 O LEU B 199 N PHE B 191 SHEET 3 AA6 4 LEU B 207 ARG B 213 -1 O GLU B 209 N ARG B 200 SHEET 4 AA6 4 SER B 219 LEU B 224 -1 O LYS B 220 N ILE B 212 CRYST1 155.133 109.429 63.043 90.00 101.88 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006446 0.000000 0.001356 0.00000 SCALE2 0.000000 0.009138 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016209 0.00000