HEADER TOXIN 11-OCT-22 8BAR TITLE E. COLI C7 DART1 IN COMPLEX WITH ADP-RIBOSYLATED SSDNA AND TITLE 2 NICOTINAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E. COLI C7 DART1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*AP*GP*AP*C)-3'); COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: C3F40_23400; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562 KEYWDS TOXIN-ANTITOXIN, DNA ADP-RIBOSYLATION, ADP-RIBOSYLTRANSFERASE KEYWDS 2 ACTIVITY, DNA BINDING, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHULLER,A.ARIZA REVDAT 3 07-FEB-24 8BAR 1 REMARK REVDAT 2 19-JUL-23 8BAR 1 JRNL REMARK REVDAT 1 12-JUL-23 8BAR 0 JRNL AUTH M.SCHULLER,R.RAGGIASCHI,P.MIKOLCEVIC,J.G.M.RACK,A.ARIZA, JRNL AUTH 2 Y.ZHANG,R.LEDERMANN,C.TANG,A.MIKOC,I.AHEL JRNL TITL MOLECULAR BASIS FOR THE REVERSIBLE ADP-RIBOSYLATION OF JRNL TITL 2 GUANOSINE BASES. JRNL REF MOL.CELL V. 83 2303 2023 JRNL REFN ISSN 1097-2765 JRNL PMID 37390817 JRNL DOI 10.1016/J.MOLCEL.2023.06.013 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.038 REMARK 3 FREE R VALUE TEST SET COUNT : 2675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3593 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 219 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1704 REMARK 3 NUCLEIC ACID ATOMS : 101 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70600 REMARK 3 B22 (A**2) : 0.70600 REMARK 3 B33 (A**2) : -1.41200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1951 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1633 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2665 ; 1.889 ; 1.671 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3825 ; 0.624 ; 1.559 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 215 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 293 ;13.339 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2131 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 393 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 325 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 48 ; 0.248 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 909 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 291 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 839 ; 1.823 ; 2.190 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 838 ; 1.824 ; 2.189 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1049 ; 2.424 ; 3.276 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1050 ; 2.423 ; 3.277 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 3.090 ; 2.484 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1113 ; 3.089 ; 2.485 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1612 ; 4.469 ; 3.600 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1613 ; 4.468 ; 3.601 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2452 8.1510 -34.0325 REMARK 3 T TENSOR REMARK 3 T11: 0.0236 T22: 0.0117 REMARK 3 T33: 0.0052 T12: 0.0102 REMARK 3 T13: 0.0063 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6535 L22: 0.8551 REMARK 3 L33: 0.9600 L12: 0.0341 REMARK 3 L13: -0.4256 L23: 0.0305 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: -0.0473 S13: -0.0113 REMARK 3 S21: 0.0640 S22: 0.0521 S23: -0.0307 REMARK 3 S31: -0.0022 S32: 0.0782 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -5.8132 20.7325 -42.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.0172 REMARK 3 T33: 0.0322 T12: -0.0102 REMARK 3 T13: 0.0284 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.7472 L22: 0.4264 REMARK 3 L33: 3.1985 L12: 0.0016 REMARK 3 L13: -0.9561 L23: 1.0670 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: 0.1072 S13: 0.1657 REMARK 3 S21: -0.1162 S22: 0.0605 S23: -0.0390 REMARK 3 S31: -0.3498 S32: 0.0768 S33: -0.1822 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976277 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53204 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 61.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 1.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7OMZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0 M SODIUM FORMATE, 0.1 M TRIS PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.51950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.87950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.87950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.27925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.87950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.87950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.75975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.87950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.87950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.27925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.87950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.87950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.75975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.51950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 0 O HOH A 401 2.03 REMARK 500 O HOH A 424 O HOH A 647 2.13 REMARK 500 O HOH A 404 O HOH A 476 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 465 O HOH D 217 5444 2.09 REMARK 500 O HOH A 595 O HOH A 641 8554 2.10 REMARK 500 O HOH A 403 O HOH A 619 8554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 -18.13 68.17 REMARK 500 ASN A 114 116.85 -38.49 REMARK 500 ALA A 195 169.82 178.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BAR A 0 207 PDB 8BAR 8BAR 0 207 DBREF 8BAR D 1 5 PDB 8BAR 8BAR 1 5 SEQRES 1 A 208 SER MET THR ILE GLN GLU ILE ILE GLN GLN ARG ASN ILE SEQRES 2 A 208 ARG SER LEU PHE HIS PHE THR HIS SER ASP ASN LEU THR SEQRES 3 A 208 SER ILE LEU ASP ASN GLY LEU MET SER ARG SER GLU LEU SEQRES 4 A 208 ASP ASN GLU ASN ASN GLU TYR ASN CYS ASN ASP GLU GLU SEQRES 5 A 208 ARG ILE ASP GLY HIS PRO ASP ALA ILE CYS LEU SER VAL SEQRES 6 A 208 SER TYR PRO ASN ALA LYS MET PHE TYR LYS TYR ARG CYS SEQRES 7 A 208 LEU LYS PRO GLY ASP TRP VAL ILE LEU GLU ILE ASN PRO SEQRES 8 A 208 SER VAL LEU TRP ALA LYS ASP CYS ALA PHE TYR PRO THR SEQRES 9 A 208 ASN ALA ALA SER ASN ASN VAL ARG PHE ILE ASN LEU ASP SEQRES 10 A 208 LEU MET LYS GLY ALA GLU ALA PHE SER ALA LEU PHE SER SEQRES 11 A 208 GLU ASN VAL PHE GLY ILE GLN ARG ASP VAL ASN LEU PRO SEQRES 12 A 208 SER GLU TYR THR THR ASP VAL GLN ALA ALA ILE LEU VAL SEQRES 13 A 208 PHE GLU LYS ILE PRO PRO SER TYR ILE ILE SER THR PHE SEQRES 14 A 208 HIS PRO ASN LYS GLU SER ALA GLU HIS PHE LYS ARG LEU SEQRES 15 A 208 TYR PRO GLN THR ILE GLN ARG TYR TYR ASP ASN LEU ASN SEQRES 16 A 208 ALA ARG THR LEU TYR SER GLN ARG HIS TYR TYR LEU GLY SEQRES 1 D 5 DA DA DG DA DC HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET NCA A 308 9 HET APR D 101 35 HETNAM EDO 1,2-ETHANEDIOL HETNAM NCA NICOTINAMIDE HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 NCA C6 H6 N2 O FORMUL 11 APR C15 H23 N5 O14 P2 FORMUL 12 HOH *356(H2 O) HELIX 1 AA1 THR A 2 ASN A 11 1 10 HELIX 2 AA2 ASN A 23 GLY A 31 1 9 HELIX 3 AA3 SER A 34 GLU A 41 1 8 HELIX 4 AA4 ASN A 68 LYS A 79 1 12 HELIX 5 AA5 SER A 91 LYS A 96 1 6 HELIX 6 AA6 ASN A 114 MET A 118 5 5 HELIX 7 AA7 LYS A 119 ALA A 126 1 8 HELIX 8 AA8 LEU A 127 SER A 129 5 3 HELIX 9 AA9 PRO A 160 SER A 162 5 3 HELIX 10 AB1 ASN A 171 TYR A 182 1 12 HELIX 11 AB2 GLN A 201 LEU A 206 1 6 SHEET 1 AA1 7 CYS A 98 TYR A 101 0 SHEET 2 AA1 7 ALA A 152 VAL A 155 -1 O ALA A 152 N TYR A 101 SHEET 3 AA1 7 ILE A 60 VAL A 64 -1 N LEU A 62 O ILE A 153 SHEET 4 AA1 7 LEU A 15 HIS A 20 -1 N PHE A 16 O SER A 63 SHEET 5 AA1 7 TRP A 83 ILE A 88 -1 O LEU A 86 N HIS A 17 SHEET 6 AA1 7 ILE A 164 HIS A 169 -1 O SER A 166 N GLU A 87 SHEET 7 AA1 7 GLN A 187 TYR A 189 1 O ARG A 188 N THR A 167 SHEET 1 AA2 2 ASN A 131 VAL A 132 0 SHEET 2 AA2 2 ILE A 135 GLN A 136 -1 O ILE A 135 N VAL A 132 LINK N2 DG D 3 C1D APR D 101 1555 1555 1.44 CRYST1 61.759 61.759 215.039 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004650 0.00000