HEADER LIGASE 12-OCT-22 8BB4 TITLE STRUCTURE OF HUMAN WDR5 AND PVHL:ELONGINC:ELONGINB BOUND TO PROTAC TITLE 2 WITH C3 LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGIN-B; COMPND 3 CHAIN: I; COMPND 4 SYNONYM: ELOB,ELONGIN 18 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 5 FACTOR SIII SUBUNIT B,SIII P18,TRANSCRIPTION ELONGATION FACTOR B COMPND 6 POLYPEPTIDE 2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ELONGIN-C; COMPND 10 CHAIN: O; COMPND 11 SYNONYM: ELOC,ELONGIN 15 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 12 FACTOR SIII SUBUNIT C,SIII P15,TRANSCRIPTION ELONGATION FACTOR B COMPND 13 POLYPEPTIDE 1; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR; COMPND 17 CHAIN: P; COMPND 18 SYNONYM: PROTEIN G7,PVHL; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 22 CHAIN: Q; COMPND 23 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ELOB, TCEB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ELOC, TCEB1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: VHL; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: WDR5, BIG3; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3-LIGASE, WDR5, VHL, ELONGIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KRAEMER,A.DOELLE,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 31-JAN-24 8BB4 1 REMARK REVDAT 2 22-NOV-23 8BB4 1 JRNL REVDAT 1 09-NOV-22 8BB4 0 JRNL AUTH M.P.SCHWALM,A.KRAMER,A.DOLLE,J.WECKESSER,X.YU,J.JIN, JRNL AUTH 2 K.SAXENA,S.KNAPP JRNL TITL TRACKING THE PROTAC DEGRADATION PATHWAY IN LIVING CELLS JRNL TITL 2 HIGHLIGHTS THE IMPORTANCE OF TERNARY COMPLEX MEASUREMENT FOR JRNL TITL 3 PROTAC OPTIMIZATION. JRNL REF CELL CHEM BIOL V. 30 753 2023 JRNL REFN ESSN 2451-9456 JRNL PMID 37354907 JRNL DOI 10.1016/J.CHEMBIOL.2023.06.002 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 888 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.81000 REMARK 3 B22 (A**2) : -2.27000 REMARK 3 B33 (A**2) : -1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.415 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.388 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5140 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4647 ; 0.004 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6996 ; 1.199 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10828 ; 0.433 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 8.311 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ; 6.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;16.400 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5940 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1012 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 1 I 104 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6297 44.2689 30.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.2537 T22: 0.0471 REMARK 3 T33: 0.2950 T12: -0.0655 REMARK 3 T13: 0.0288 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.9093 L22: 3.7171 REMARK 3 L33: 2.0493 L12: -1.2510 REMARK 3 L13: 0.3156 L23: -0.6369 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: 0.0754 S13: 0.4367 REMARK 3 S21: 0.0366 S22: -0.0226 S23: -0.1177 REMARK 3 S31: -0.2624 S32: 0.1191 S33: 0.0777 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 17 O 48 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9077 31.0318 37.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.2672 T22: 0.0795 REMARK 3 T33: 0.2256 T12: 0.0313 REMARK 3 T13: 0.0832 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.8208 L22: 6.9918 REMARK 3 L33: 4.7307 L12: -1.0627 REMARK 3 L13: 1.9033 L23: -1.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -0.3593 S13: 0.4903 REMARK 3 S21: -0.2237 S22: 0.0333 S23: 0.8242 REMARK 3 S31: -0.1103 S32: -0.5807 S33: -0.0686 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 57 O 112 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0130 25.3169 31.9467 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.0094 REMARK 3 T33: 0.1312 T12: 0.0084 REMARK 3 T13: 0.0476 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.9518 L22: 2.8480 REMARK 3 L33: 6.4081 L12: -0.0194 REMARK 3 L13: -1.9634 L23: 0.9453 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: 0.0864 S13: 0.1830 REMARK 3 S21: 0.0859 S22: -0.0605 S23: 0.1152 REMARK 3 S31: -0.1426 S32: -0.2355 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 62 P 208 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0254 9.1438 13.7636 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.0168 REMARK 3 T33: 0.1499 T12: 0.0068 REMARK 3 T13: 0.1007 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.9905 L22: 1.3963 REMARK 3 L33: 5.9219 L12: 0.1015 REMARK 3 L13: 1.1915 L23: 0.9824 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: -0.0864 S13: -0.1914 REMARK 3 S21: 0.0697 S22: -0.0051 S23: 0.1385 REMARK 3 S31: 0.3311 S32: -0.2330 S33: -0.0963 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 33 Q 334 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9261 -22.7646 -11.7505 REMARK 3 T TENSOR REMARK 3 T11: 0.4334 T22: 0.0170 REMARK 3 T33: 0.2449 T12: -0.0163 REMARK 3 T13: 0.0805 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.0753 L22: 3.5987 REMARK 3 L33: 1.3364 L12: 0.6453 REMARK 3 L13: -0.1961 L23: -0.2726 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.0802 S13: -0.1411 REMARK 3 S21: -0.3569 S22: 0.0180 S23: -0.3050 REMARK 3 S31: -0.1648 S32: -0.0002 S33: 0.0375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8BB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 184.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7Q2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21-28% PEG 3350 0.4 M KSCN 0.1 M HEPES REMARK 280 PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 92.25300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, O, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS O 15 REMARK 465 ALA O 16 REMARK 465 PRO O 49 REMARK 465 GLY O 50 REMARK 465 GLN O 51 REMARK 465 PHE O 52 REMARK 465 ALA O 53 REMARK 465 GLU O 54 REMARK 465 ASN O 55 REMARK 465 GLU O 56 REMARK 465 GLY P 52 REMARK 465 SER P 53 REMARK 465 MET P 54 REMARK 465 GLU P 55 REMARK 465 ALA P 56 REMARK 465 GLY P 57 REMARK 465 ARG P 58 REMARK 465 PRO P 59 REMARK 465 ARG P 60 REMARK 465 PRO P 61 REMARK 465 GLN P 209 REMARK 465 ARG P 210 REMARK 465 MET P 211 REMARK 465 GLY P 212 REMARK 465 ASP P 213 REMARK 465 MET Q 14 REMARK 465 GLY Q 15 REMARK 465 SER Q 16 REMARK 465 SER Q 17 REMARK 465 HIS Q 18 REMARK 465 HIS Q 19 REMARK 465 HIS Q 20 REMARK 465 HIS Q 21 REMARK 465 HIS Q 22 REMARK 465 HIS Q 23 REMARK 465 SER Q 24 REMARK 465 SER Q 25 REMARK 465 GLY Q 26 REMARK 465 LEU Q 27 REMARK 465 VAL Q 28 REMARK 465 PRO Q 29 REMARK 465 ARG Q 30 REMARK 465 GLY Q 31 REMARK 465 SER Q 32 REMARK 465 ILE Q 210 REMARK 465 ASP Q 211 REMARK 465 ASP Q 212 REMARK 465 ASP Q 213 REMARK 465 ASN Q 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET I 1 CG SD CE REMARK 470 GLN I 65 CG CD OE1 NE2 REMARK 470 ARG I 80 CG CD NE CZ NH1 NH2 REMARK 470 THR O 57 OG1 CG2 REMARK 470 LYS P 171 CG CD CE NZ REMARK 470 GLU P 173 CG CD OE1 OE2 REMARK 470 ARG P 182 CG CD NE CZ NH1 NH2 REMARK 470 HIS P 208 CG ND1 CD2 CE1 NE2 REMARK 470 LYS Q 87 CD CE NZ REMARK 470 LYS Q 159 CG CD CE NZ REMARK 470 LYS Q 162 CG CD CE NZ REMARK 470 ARG Q 181 CG CD NE CZ NH1 NH2 REMARK 470 GLN Q 204 CG CD OE1 NE2 REMARK 470 LEU Q 209 CG CD1 CD2 REMARK 470 LYS Q 227 CG CD CE NZ REMARK 470 LYS Q 245 CG CD CE NZ REMARK 470 LYS Q 256 CG CD CE NZ REMARK 470 LYS Q 259 CG CD CE NZ REMARK 470 LYS Q 331 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS I 10 -112.19 54.66 REMARK 500 ASP I 47 -104.98 55.56 REMARK 500 ASP I 82 -97.73 80.60 REMARK 500 ASN O 58 44.81 -105.27 REMARK 500 GLU O 64 -37.74 -132.00 REMARK 500 GLU O 89 99.16 -63.66 REMARK 500 ASP O 111 70.69 58.22 REMARK 500 ARG P 79 44.91 -103.01 REMARK 500 SER P 111 -156.16 -127.55 REMARK 500 GLN P 132 8.48 80.18 REMARK 500 GLU P 173 34.52 -74.50 REMARK 500 ASN P 174 -10.61 -168.32 REMARK 500 ALA Q 47 150.12 -45.51 REMARK 500 LYS Q 67 -3.50 89.98 REMARK 500 ASP Q 108 20.24 -74.83 REMARK 500 ASN Q 136 132.04 -172.65 REMARK 500 GLU Q 151 10.77 84.04 REMARK 500 SER Q 171 51.82 -114.40 REMARK 500 ASP Q 172 160.48 169.90 REMARK 500 GLU Q 258 -30.15 -131.62 REMARK 500 VAL Q 268 16.88 -145.35 REMARK 500 LYS Q 291 -3.08 82.95 REMARK 500 ASP Q 324 -72.98 -90.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BB4 I 1 104 UNP Q15370 ELOB_HUMAN 1 104 DBREF 8BB4 O 16 112 UNP Q15369 ELOC_HUMAN 16 112 DBREF 8BB4 P 54 213 UNP P40337 VHL_HUMAN 54 213 DBREF 8BB4 Q 33 334 UNP P61964 WDR5_HUMAN 33 334 SEQADV 8BB4 LYS O 15 UNP Q15369 EXPRESSION TAG SEQADV 8BB4 GLY P 52 UNP P40337 EXPRESSION TAG SEQADV 8BB4 SER P 53 UNP P40337 EXPRESSION TAG SEQADV 8BB4 MET Q 14 UNP P61964 INITIATING METHIONINE SEQADV 8BB4 GLY Q 15 UNP P61964 EXPRESSION TAG SEQADV 8BB4 SER Q 16 UNP P61964 EXPRESSION TAG SEQADV 8BB4 SER Q 17 UNP P61964 EXPRESSION TAG SEQADV 8BB4 HIS Q 18 UNP P61964 EXPRESSION TAG SEQADV 8BB4 HIS Q 19 UNP P61964 EXPRESSION TAG SEQADV 8BB4 HIS Q 20 UNP P61964 EXPRESSION TAG SEQADV 8BB4 HIS Q 21 UNP P61964 EXPRESSION TAG SEQADV 8BB4 HIS Q 22 UNP P61964 EXPRESSION TAG SEQADV 8BB4 HIS Q 23 UNP P61964 EXPRESSION TAG SEQADV 8BB4 SER Q 24 UNP P61964 EXPRESSION TAG SEQADV 8BB4 SER Q 25 UNP P61964 EXPRESSION TAG SEQADV 8BB4 GLY Q 26 UNP P61964 EXPRESSION TAG SEQADV 8BB4 LEU Q 27 UNP P61964 EXPRESSION TAG SEQADV 8BB4 VAL Q 28 UNP P61964 EXPRESSION TAG SEQADV 8BB4 PRO Q 29 UNP P61964 EXPRESSION TAG SEQADV 8BB4 ARG Q 30 UNP P61964 EXPRESSION TAG SEQADV 8BB4 GLY Q 31 UNP P61964 EXPRESSION TAG SEQADV 8BB4 SER Q 32 UNP P61964 EXPRESSION TAG SEQRES 1 I 104 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 I 104 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 I 104 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 I 104 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 I 104 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 I 104 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 I 104 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 I 104 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 1 O 98 LYS ALA MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS SEQRES 2 O 98 GLU PHE ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY SEQRES 3 O 98 THR ILE LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA SEQRES 4 O 98 GLU ASN GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SEQRES 5 O 98 SER HIS VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR SEQRES 6 O 98 LYS VAL ARG TYR THR ASN SER SER THR GLU ILE PRO GLU SEQRES 7 O 98 PHE PRO ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET SEQRES 8 O 98 ALA ALA ASN PHE LEU ASP CYS SEQRES 1 P 162 GLY SER MET GLU ALA GLY ARG PRO ARG PRO VAL LEU ARG SEQRES 2 P 162 SER VAL ASN SER ARG GLU PRO SER GLN VAL ILE PHE CYS SEQRES 3 P 162 ASN ARG SER PRO ARG VAL VAL LEU PRO VAL TRP LEU ASN SEQRES 4 P 162 PHE ASP GLY GLU PRO GLN PRO TYR PRO THR LEU PRO PRO SEQRES 5 P 162 GLY THR GLY ARG ARG ILE HIS SER TYR ARG GLY HIS LEU SEQRES 6 P 162 TRP LEU PHE ARG ASP ALA GLY THR HIS ASP GLY LEU LEU SEQRES 7 P 162 VAL ASN GLN THR GLU LEU PHE VAL PRO SER LEU ASN VAL SEQRES 8 P 162 ASP GLY GLN PRO ILE PHE ALA ASN ILE THR LEU PRO VAL SEQRES 9 P 162 TYR THR LEU LYS GLU ARG CYS LEU GLN VAL VAL ARG SER SEQRES 10 P 162 LEU VAL LYS PRO GLU ASN TYR ARG ARG LEU ASP ILE VAL SEQRES 11 P 162 ARG SER LEU TYR GLU ASP LEU GLU ASP HIS PRO ASN VAL SEQRES 12 P 162 GLN LYS ASP LEU GLU ARG LEU THR GLN GLU ARG ILE ALA SEQRES 13 P 162 HIS GLN ARG MET GLY ASP SEQRES 1 Q 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 Q 321 LEU VAL PRO ARG GLY SER PRO ASN TYR ALA LEU LYS PHE SEQRES 3 Q 321 THR LEU ALA GLY HIS THR LYS ALA VAL SER SER VAL LYS SEQRES 4 Q 321 PHE SER PRO ASN GLY GLU TRP LEU ALA SER SER SER ALA SEQRES 5 Q 321 ASP LYS LEU ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS SEQRES 6 Q 321 PHE GLU LYS THR ILE SER GLY HIS LYS LEU GLY ILE SER SEQRES 7 Q 321 ASP VAL ALA TRP SER SER ASP SER ASN LEU LEU VAL SER SEQRES 8 Q 321 ALA SER ASP ASP LYS THR LEU LYS ILE TRP ASP VAL SER SEQRES 9 Q 321 SER GLY LYS CYS LEU LYS THR LEU LYS GLY HIS SER ASN SEQRES 10 Q 321 TYR VAL PHE CYS CYS ASN PHE ASN PRO GLN SER ASN LEU SEQRES 11 Q 321 ILE VAL SER GLY SER PHE ASP GLU SER VAL ARG ILE TRP SEQRES 12 Q 321 ASP VAL LYS THR GLY LYS CYS LEU LYS THR LEU PRO ALA SEQRES 13 Q 321 HIS SER ASP PRO VAL SER ALA VAL HIS PHE ASN ARG ASP SEQRES 14 Q 321 GLY SER LEU ILE VAL SER SER SER TYR ASP GLY LEU CYS SEQRES 15 Q 321 ARG ILE TRP ASP THR ALA SER GLY GLN CYS LEU LYS THR SEQRES 16 Q 321 LEU ILE ASP ASP ASP ASN PRO PRO VAL SER PHE VAL LYS SEQRES 17 Q 321 PHE SER PRO ASN GLY LYS TYR ILE LEU ALA ALA THR LEU SEQRES 18 Q 321 ASP ASN THR LEU LYS LEU TRP ASP TYR SER LYS GLY LYS SEQRES 19 Q 321 CYS LEU LYS THR TYR THR GLY HIS LYS ASN GLU LYS TYR SEQRES 20 Q 321 CYS ILE PHE ALA ASN PHE SER VAL THR GLY GLY LYS TRP SEQRES 21 Q 321 ILE VAL SER GLY SER GLU ASP ASN LEU VAL TYR ILE TRP SEQRES 22 Q 321 ASN LEU GLN THR LYS GLU ILE VAL GLN LYS LEU GLN GLY SEQRES 23 Q 321 HIS THR ASP VAL VAL ILE SER THR ALA CYS HIS PRO THR SEQRES 24 Q 321 GLU ASN ILE ILE ALA SER ALA ALA LEU GLU ASN ASP LYS SEQRES 25 Q 321 THR ILE LYS LEU TRP LYS SER ASP CYS HET Q3R P 301 71 HETNAM Q3R ~{N}-[5-[4-[[4-[[(2~{S})-3,3-DIMETHYL-1-[(2~{S},4~{R})- HETNAM 2 Q3R 2-[[4-(4-METHYL-1,3-THIAZOL-5-YL) HETNAM 3 Q3R PHENYL]METHYLCARBAMOYL]-4-OXIDANYL-PYRROLIDIN-1-YL]-1- HETNAM 4 Q3R OXIDANYLIDENE-BUTAN-2-YL]AMINO]-4-OXIDANYLIDENE- HETNAM 5 Q3R BUTYL]CARBAMOYL]PHENYL]-2-(4-METHYLPIPERAZIN-1-YL) HETNAM 6 Q3R PHENYL]-6-OXIDANYL-4-(TRIFLUOROMETHYL)PYRIDINE-3- HETNAM 7 Q3R CARBOXAMIDE FORMUL 5 Q3R C51 H58 F3 N9 O7 S FORMUL 6 HOH *58(H2 O) HELIX 1 AA1 THR I 23 LYS I 36 1 14 HELIX 2 AA2 LEU I 57 GLY I 61 5 5 HELIX 3 AA3 PRO I 100 LYS I 104 5 5 HELIX 4 AA4 ARG O 33 LEU O 37 1 5 HELIX 5 AA5 SER O 39 LEU O 46 1 8 HELIX 6 AA6 PRO O 66 THR O 84 1 19 HELIX 7 AA7 ALA O 96 GLU O 98 5 3 HELIX 8 AA8 ILE O 99 ASP O 111 1 13 HELIX 9 AA9 THR P 157 SER P 168 1 12 HELIX 10 AB1 ASN P 174 LEU P 178 5 5 HELIX 11 AB2 VAL P 181 ASP P 190 1 10 HELIX 12 AB3 ASN P 193 HIS P 208 1 16 SHEET 1 AA1 4 GLN I 49 LEU I 50 0 SHEET 2 AA1 4 GLN I 42 LYS I 46 -1 N LYS I 46 O GLN I 49 SHEET 3 AA1 4 ALA I 73 ALA I 81 -1 O ALA I 78 N ARG I 43 SHEET 4 AA1 4 THR I 84 PHE I 85 -1 O THR I 84 N ALA I 81 SHEET 1 AA2 8 GLN I 49 LEU I 50 0 SHEET 2 AA2 8 GLN I 42 LYS I 46 -1 N LYS I 46 O GLN I 49 SHEET 3 AA2 8 ALA I 73 ALA I 81 -1 O ALA I 78 N ARG I 43 SHEET 4 AA2 8 ASP I 2 ARG I 9 1 N MET I 6 O VAL I 75 SHEET 5 AA2 8 THR I 12 LYS I 19 -1 O ALA I 18 N VAL I 3 SHEET 6 AA2 8 GLU O 28 LYS O 32 1 O ILE O 30 N THR I 13 SHEET 7 AA2 8 TYR O 18 ILE O 22 -1 N VAL O 19 O VAL O 31 SHEET 8 AA2 8 GLU O 59 ASN O 61 1 O VAL O 60 N ILE O 22 SHEET 1 AA3 4 GLY P 106 TYR P 112 0 SHEET 2 AA3 4 PRO P 71 ASN P 78 -1 N VAL P 74 O ILE P 109 SHEET 3 AA3 4 ILE P 147 THR P 152 1 O ILE P 147 N ILE P 75 SHEET 4 AA3 4 LEU P 129 VAL P 130 -1 N LEU P 129 O THR P 152 SHEET 1 AA4 3 PRO P 95 PRO P 97 0 SHEET 2 AA4 3 VAL P 84 LEU P 89 -1 N TRP P 88 O GLN P 96 SHEET 3 AA4 3 LEU P 116 ASP P 121 -1 O ARG P 120 N LEU P 85 SHEET 1 AA5 4 ALA Q 36 LEU Q 41 0 SHEET 2 AA5 4 ILE Q 327 LYS Q 331 -1 O ILE Q 327 N LEU Q 41 SHEET 3 AA5 4 ILE Q 315 ALA Q 320 -1 N SER Q 318 O LYS Q 328 SHEET 4 AA5 4 VAL Q 304 CYS Q 309 -1 N ALA Q 308 O ALA Q 317 SHEET 1 AA6 4 VAL Q 48 PHE Q 53 0 SHEET 2 AA6 4 TRP Q 59 SER Q 64 -1 O ALA Q 61 N LYS Q 52 SHEET 3 AA6 4 ILE Q 69 GLY Q 73 -1 O TRP Q 72 N LEU Q 60 SHEET 4 AA6 4 PHE Q 79 ILE Q 83 -1 O ILE Q 83 N ILE Q 69 SHEET 1 AA7 4 ILE Q 90 TRP Q 95 0 SHEET 2 AA7 4 LEU Q 101 SER Q 106 -1 O ALA Q 105 N SER Q 91 SHEET 3 AA7 4 LEU Q 111 ASP Q 115 -1 O TRP Q 114 N LEU Q 102 SHEET 4 AA7 4 LYS Q 120 LEU Q 125 -1 O LEU Q 125 N LEU Q 111 SHEET 1 AA8 4 VAL Q 132 PHE Q 137 0 SHEET 2 AA8 4 LEU Q 143 SER Q 148 -1 O GLY Q 147 N PHE Q 133 SHEET 3 AA8 4 VAL Q 153 ASP Q 157 -1 O TRP Q 156 N ILE Q 144 SHEET 4 AA8 4 CYS Q 163 LEU Q 167 -1 O LEU Q 167 N VAL Q 153 SHEET 1 AA9 4 VAL Q 174 PHE Q 179 0 SHEET 2 AA9 4 LEU Q 185 SER Q 190 -1 O VAL Q 187 N HIS Q 178 SHEET 3 AA9 4 CYS Q 195 ASP Q 199 -1 O TRP Q 198 N ILE Q 186 SHEET 4 AA9 4 CYS Q 205 LEU Q 209 -1 O LYS Q 207 N ILE Q 197 SHEET 1 AB1 4 PHE Q 219 PHE Q 222 0 SHEET 2 AB1 4 TYR Q 228 THR Q 233 -1 O LEU Q 230 N LYS Q 221 SHEET 3 AB1 4 THR Q 237 ASP Q 242 -1 O LYS Q 239 N ALA Q 231 SHEET 4 AB1 4 LYS Q 247 TYR Q 252 -1 O LEU Q 249 N LEU Q 240 SHEET 1 AB2 4 ALA Q 264 SER Q 267 0 SHEET 2 AB2 4 TRP Q 273 SER Q 276 -1 O VAL Q 275 N ASN Q 265 SHEET 3 AB2 4 VAL Q 283 ASN Q 287 -1 O TYR Q 284 N SER Q 276 SHEET 4 AB2 4 ILE Q 293 LEU Q 297 -1 O VAL Q 294 N ILE Q 285 CRYST1 46.786 184.506 47.951 90.00 102.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021374 0.000000 0.004849 0.00000 SCALE2 0.000000 0.005420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021385 0.00000