HEADER IMMUNE SYSTEM 13-OCT-22 8BBH TITLE THE CRYSTAL STRUCTURE OF A MOUSE FAB FRAGMENT TL1 IN COMPLEX WITH A TITLE 2 HUMAN GLUCOSE-6-PHOSPHATE ISOMERASE PEPTIDE 293-307 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPI,AUTOCRINE MOTILITY FACTOR,AMF,NEUROLEUKIN,NLK, COMPND 5 PHOSPHOGLUCOSE ISOMERASE,PGI,PHOSPHOHEXOSE ISOMERASE,PHI,SPERM COMPND 6 ANTIGEN 36,SA-36; COMPND 7 EC: 5.3.1.9; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: BIOTYNYLATED (BTN) PEPTIDE CONTAINING REGION OF COMPND 10 GLUCOSE-6-PHOSPHATE ISOMERASE (GPI) 293-307; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: HEAVY CHAIN OF TL1 FAB FRAGMENT; COMPND 13 CHAIN: H; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: LIGHT CHAIN OF TL1 FAB FRAGMENT; COMPND 16 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_TAXID: 10090 KEYWDS ANTIBODY FAB FRAGMENT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.GE,R.HOLMDAHL,T.LI REVDAT 2 05-JUL-23 8BBH 1 AUTHOR JRNL REVDAT 1 21-DEC-22 8BBH 0 JRNL AUTH T.LI,C.GE,A.KRAMER,O.SAREILA,M.LEU AGELII,L.JOHANSSON, JRNL AUTH 2 K.FORSLIND,E.LONNBLOM,M.YANG,B.XU,Q.LI,L.CHENG,G.BERGSTROM, JRNL AUTH 3 G.FERNANDEZ,A.KASTBOM,S.RANTAPAA-DAHLQVIST,I.GJERTSSON, JRNL AUTH 4 R.HOLMDAHL JRNL TITL PATHOGENIC ANTIBODY RESPONSE TO GLUCOSE-6-PHOSPHATE JRNL TITL 2 ISOMERASE TARGETS A MODIFIED EPITOPE UNIQUELY EXPOSED ON JRNL TITL 3 JOINT CARTILAGE. JRNL REF ANN RHEUM DIS V. 82 799 2023 JRNL REFN ISSN 1468-2060 JRNL PMID 36858822 JRNL DOI 10.1136/ARD-2022-223633 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0349 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.782 REMARK 3 FREE R VALUE TEST SET COUNT : 3038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4454 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01700 REMARK 3 B22 (A**2) : 0.02800 REMARK 3 B33 (A**2) : -0.01100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3433 ; 0.013 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 3045 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4676 ; 1.602 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7137 ; 0.555 ; 1.552 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 435 ; 7.285 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ;15.298 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;14.465 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3829 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 673 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 549 ; 0.300 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 53 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1638 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1752 ; 2.300 ; 2.621 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1752 ; 2.300 ; 2.621 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2183 ; 3.300 ; 3.917 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2184 ; 3.299 ; 3.918 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1681 ; 3.915 ; 2.950 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1680 ; 3.914 ; 2.949 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2493 ; 5.838 ; 4.274 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2494 ; 5.837 ; 4.275 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.619 REMARK 200 RESOLUTION RANGE LOW (A) : 55.408 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: MODEL STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 18% W/V POLYETHYLENE GLYCOL REMARK 280 8,000, EVAPORATION, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.77250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.10950 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.77250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.10950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACA A 291 REMARK 465 CYS A 292 REMARK 465 PHE A 293 REMARK 465 GLU A 294 REMARK 465 GLN A 295 REMARK 465 LEU A 296 REMARK 465 LEU A 297 REMARK 465 SER A 298 REMARK 465 GLY A 299 REMARK 465 CYS A 308 REMARK 465 ALA A 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP L 156 HD1 HIS L 194 1.11 REMARK 500 HB3 SER L 164 O HOH L 357 1.12 REMARK 500 HH TYR H 60 H PHE H 70 1.16 REMARK 500 HB2 ALA L 198 O HOH L 355 1.33 REMARK 500 HB3 ALA L 198 O HOH L 355 1.34 REMARK 500 OD2 ASP L 156 ND1 HIS L 194 1.39 REMARK 500 HH TYR H 126 O HOH H 302 1.51 REMARK 500 CB ALA L 198 O HOH L 355 1.56 REMARK 500 H ALA A 300 O HOH A 401 1.60 REMARK 500 C PHE A 307 O HOH A 406 1.77 REMARK 500 O HOH L 305 O HOH L 326 1.81 REMARK 500 C GLU L 218 O HOH L 304 1.81 REMARK 500 O HOH A 401 O HOH A 402 1.82 REMARK 500 OD2 ASP L 156 CE1 HIS L 194 1.85 REMARK 500 CG1 VAL L 115 O HOH L 445 1.92 REMARK 500 CE1 HIS L 194 O HOH L 305 1.99 REMARK 500 CB SER L 164 O HOH L 357 2.04 REMARK 500 OD1 ASP L 175 O HOH L 301 2.05 REMARK 500 O HOH L 383 O HOH L 436 2.07 REMARK 500 O HOH H 378 O HOH H 452 2.11 REMARK 500 OD2 ASP L 190 O HOH L 302 2.15 REMARK 500 OG SER L 161 O HOH L 303 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP H 211 HE2 HIS L 194 3355 1.43 REMARK 500 OD2 ASP H 211 NE2 HIS L 194 3355 1.88 REMARK 500 OD2 ASP H 62 OD2 ASP H 62 2545 2.14 REMARK 500 O HOH H 436 O HOH L 457 3455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 194 CE1 HIS L 194 NE2 -0.508 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN L 165 CB - CG - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 HIS L 194 CA - CB - CG ANGL. DEV. = -10.7 DEGREES REMARK 500 HIS L 194 CB - CG - CD2 ANGL. DEV. = 15.8 DEGREES REMARK 500 HIS L 194 ND1 - CG - CD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 HIS L 194 CE1 - NE2 - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 92 167.61 177.01 REMARK 500 SER H 153 83.66 98.71 REMARK 500 VAL L 56 -49.01 78.21 REMARK 500 ASN L 157 -9.60 85.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 153 VAL H 154 147.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 24 0.08 SIDE CHAIN REMARK 500 ARG L 59 0.09 SIDE CHAIN REMARK 500 ARG L 147 0.15 SIDE CHAIN REMARK 500 HIS L 194 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8BBH A 293 307 UNP P06744 G6PI_HUMAN 293 307 DBREF 8BBH H 1 216 PDB 8BBH 8BBH 1 216 DBREF 8BBH L 1 218 PDB 8BBH 8BBH 1 218 SEQADV 8BBH ACA A 291 UNP P06744 EXPRESSION TAG SEQADV 8BBH CYS A 292 UNP P06744 EXPRESSION TAG SEQADV 8BBH CYS A 308 UNP P06744 EXPRESSION TAG SEQADV 8BBH ALA A 309 UNP P06744 EXPRESSION TAG SEQRES 1 A 19 ACA CYS PHE GLU GLN LEU LEU SER GLY ALA HIS TRP MET SEQRES 2 A 19 ASP GLN HIS PHE CYS ALA SEQRES 1 H 213 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 H 213 PRO GLY GLU THR VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 213 TYR THR PHE THR THR TYR ALA LEU ASN TRP VAL LYS GLN SEQRES 4 H 213 ALA PRO GLY LYS GLY LEU LYS TRP MET GLY TRP ILE ASN SEQRES 5 H 213 THR TYR SER GLY VAL PRO THR TYR ALA ASP ASP PHE LYS SEQRES 6 H 213 GLY ARG PHE ALA PHE SER LEU GLU THR SER ALA SER THR SEQRES 7 H 213 ALA TYR LEU GLN ILE ASN ASN LEU LYS ASN ALA ASP THR SEQRES 8 H 213 ALA THR TYR PHE CYS ALA ARG GLY MET SER GLY THR PHE SEQRES 9 H 213 ASP TYR TRP GLY GLN GLY THR SER LEU THR VAL SER SER SEQRES 10 H 213 ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 213 GLY CYS THR GLY SER SER VAL THR LEU GLY CYS LEU VAL SEQRES 12 H 213 LYS GLY TYR PHE PRO GLU SER VAL THR VAL THR TRP ASN SEQRES 13 H 213 SER GLY SER LEU SER SER SER VAL HIS THR PHE PRO ALA SEQRES 14 H 213 LEU LEU GLN SER GLY LEU TYR THR MET SER SER SER VAL SEQRES 15 H 213 THR VAL PRO SER SER THR TRP PRO SER GLN THR VAL THR SEQRES 16 H 213 CYS SER VAL ALA HIS PRO ALA SER SER THR THR VAL ASP SEQRES 17 H 213 LYS LYS ILE GLU PRO SEQRES 1 L 218 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 218 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 218 GLN SER LEU VAL TYR SER ASN GLY ASN THR TYR LEU ASP SEQRES 4 L 218 TRP PHE LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 218 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 218 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 218 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 218 PHE CYS SER GLN THR THR HIS VAL PRO PRO THR PHE GLY SEQRES 9 L 218 GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 218 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 218 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 218 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 218 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 218 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 218 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 218 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 218 PRO VAL THR LYS SER PHE ASN ARG GLY GLU FORMUL 4 HOH *336(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 62 LYS H 65 5 4 HELIX 3 AA3 THR H 74 ALA H 76 5 3 HELIX 4 AA4 LYS H 87 THR H 91 5 5 HELIX 5 AA5 PRO H 204 SER H 207 5 4 HELIX 6 AA6 GLU L 84 LEU L 88 5 5 HELIX 7 AA7 SER L 126 SER L 132 1 7 HELIX 8 AA8 LYS L 188 HIS L 194 1 7 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 ILE H 83 -1 O LEU H 81 N ILE H 20 SHEET 4 AA1 4 PHE H 68 GLU H 73 -1 N GLU H 73 O THR H 78 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 111 VAL H 115 1 O SER H 112 N GLU H 10 SHEET 3 AA2 6 ALA H 92 MET H 100 -1 N ALA H 92 O LEU H 113 SHEET 4 AA2 6 ALA H 33 GLN H 39 -1 N ASN H 35 O ALA H 97 SHEET 5 AA2 6 LYS H 46 ILE H 51 -1 O LYS H 46 N LYS H 38 SHEET 6 AA2 6 PRO H 58 TYR H 60 -1 O THR H 59 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 111 VAL H 115 1 O SER H 112 N GLU H 10 SHEET 3 AA3 4 ALA H 92 MET H 100 -1 N ALA H 92 O LEU H 113 SHEET 4 AA3 4 THR H 103 TRP H 107 -1 O THR H 103 N MET H 100 SHEET 1 AA4 4 SER H 124 LEU H 128 0 SHEET 2 AA4 4 SER H 139 TYR H 149 -1 O GLY H 143 N LEU H 128 SHEET 3 AA4 4 LEU H 178 PRO H 188 -1 O TYR H 179 N TYR H 149 SHEET 4 AA4 4 SER H 166 GLN H 175 -1 N GLN H 175 O LEU H 178 SHEET 1 AA5 3 THR H 155 ASN H 159 0 SHEET 2 AA5 3 THR H 198 HIS H 203 -1 O SER H 200 N THR H 157 SHEET 3 AA5 3 THR H 208 LYS H 213 -1 O VAL H 210 N VAL H 201 SHEET 1 AA6 4 MET L 4 THR L 7 0 SHEET 2 AA6 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA6 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 AA6 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AA7 6 SER L 10 VAL L 13 0 SHEET 2 AA7 6 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AA7 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AA7 6 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 AA7 6 LYS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AA7 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA8 4 SER L 10 VAL L 13 0 SHEET 2 AA8 4 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AA8 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 AA8 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AA9 4 SER L 119 PHE L 123 0 SHEET 2 AA9 4 THR L 134 PHE L 144 -1 O ASN L 142 N SER L 119 SHEET 3 AA9 4 TYR L 178 SER L 187 -1 O LEU L 180 N LEU L 141 SHEET 4 AA9 4 SER L 164 VAL L 168 -1 N GLN L 165 O THR L 183 SHEET 1 AB1 4 ALA L 158 GLN L 160 0 SHEET 2 AB1 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AB1 4 VAL L 196 THR L 202 -1 O THR L 202 N LYS L 150 SHEET 4 AB1 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 2 CYS H 144 CYS H 199 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.19 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.17 CISPEP 1 PHE H 150 PRO H 151 0 -1.87 CISPEP 2 TRP H 192 PRO H 193 0 6.70 CISPEP 3 THR L 7 PRO L 8 0 -10.31 CISPEP 4 VAL L 99 PRO L 100 0 -3.20 CISPEP 5 TYR L 145 PRO L 146 0 -0.21 CRYST1 67.660 75.545 96.219 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013237 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010393 0.00000