HEADER OXIDOREDUCTASE 13-OCT-22 8BBM TITLE DNA BINDING DOMAIN OF J-DNA BINDING PROTEIN 1 (JBP1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMINE DIOXYGENASE JBP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: J-BINDING PROTEIN 1,THYMIDINE HYDROXYLASE JBP1; COMPND 5 EC: 1.14.11.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA TARENTOLAE; SOURCE 3 ORGANISM_TAXID: 5689; SOURCE 4 GENE: JBP1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS J-DNA BINDING PROTEIN, JBP1, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DE VRIES,R.P.JOOSTEN,A.PERRAKIS REVDAT 4 13-NOV-24 8BBM 1 REMARK REVDAT 3 07-FEB-24 8BBM 1 REMARK REVDAT 2 05-JUL-23 8BBM 1 JRNL REVDAT 1 09-NOV-22 8BBM 0 JRNL AUTH I.DE VRIES,D.AMMERLAAN,T.HEIDEBRECHT,P.H.CELIE,D.P.GEERKE, JRNL AUTH 2 R.P.JOOSTEN,A.PERRAKIS JRNL TITL DISTANT SEQUENCE REGIONS OF JBP1 CONTRIBUTE TO J-DNA JRNL TITL 2 BINDING. JRNL REF LIFE SCI ALLIANCE V. 6 2023 JRNL REFN ESSN 2575-1077 JRNL PMID 37328191 JRNL DOI 10.26508/LSA.202302150 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1476 ; 0.013 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 1408 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1985 ; 1.621 ; 1.883 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3275 ; 1.142 ; 2.816 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 179 ; 5.090 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;33.110 ;23.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 257 ;13.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.894 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 204 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1630 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 309 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 704 ; 2.130 ; 3.765 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 703 ; 2.119 ; 3.762 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 887 ; 3.227 ; 5.620 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 888 ; 3.227 ; 5.624 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 772 ; 2.762 ; 4.102 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 772 ; 2.759 ; 4.103 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1098 ; 4.379 ; 6.008 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6168 ; 7.393 ;70.964 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6091 ; 7.345 ;70.659 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 392 A 561 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7230 21.3697 -1.5216 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.0505 REMARK 3 T33: 0.0234 T12: -0.0284 REMARK 3 T13: 0.0447 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.3929 L22: 1.1570 REMARK 3 L33: 4.1488 L12: -0.1206 REMARK 3 L13: -1.5178 L23: 0.9657 REMARK 3 S TENSOR REMARK 3 S11: 0.1769 S12: -0.0494 S13: 0.0653 REMARK 3 S21: -0.1117 S22: 0.0033 S23: 0.0223 REMARK 3 S31: -0.3954 S32: 0.2956 S33: -0.1801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8BBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292125982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2XSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-17% PEG 6000, 0.1M SODIUM IODIDE OR REMARK 280 15-17% PEG, 0.2M POTASSIUM NITRATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.94733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.89467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.92100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 154.86833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.97367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.94733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.89467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 154.86833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.92100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.97367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 663 O HOH A 673 2.13 REMARK 500 O HOH A 630 O HOH A 670 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 395 CG - SE - CE ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 413 -1.65 71.91 REMARK 500 MSE A 514 78.86 -108.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BBM A 392 561 UNP Q9U6M1 JBP1_LEITA 392 561 SEQRES 1 A 170 THR ASN LEU MSE VAL SER THR ALA VAL GLU LYS LYS LYS SEQRES 2 A 170 TYR LEU ASP SER GLU PHE LEU LEU HIS CYS ILE SER ALA SEQRES 3 A 170 GLN LEU LEU ASP MSE TRP LYS GLN ALA ARG ALA ARG TRP SEQRES 4 A 170 LEU GLU LEU VAL GLY LYS GLU TRP ALA HIS MSE LEU ALA SEQRES 5 A 170 LEU ASN PRO GLU ARG LYS ASP PHE LEU TRP LYS ASN GLN SEQRES 6 A 170 SER GLU MSE ASN SER ALA PHE PHE ASP LEU CYS GLU VAL SEQRES 7 A 170 GLY LYS GLN VAL MSE LEU GLY LEU LEU GLY LYS GLU VAL SEQRES 8 A 170 ALA LEU PRO LYS GLU GLU GLN ALA PHE TRP ILE MSE TYR SEQRES 9 A 170 ALA VAL HIS LEU SER ALA ALA CYS ALA GLU GLU LEU HIS SEQRES 10 A 170 MSE PRO GLU VAL ALA MSE SER LEU ARG LYS LEU ASN VAL SEQRES 11 A 170 LYS LEU LYS ASP PHE ASN PHE GLY GLY THR ARG TYR PHE SEQRES 12 A 170 LYS ASP MSE PRO PRO GLU GLU LYS LYS ARG ARG MSE GLU SEQRES 13 A 170 ARG LYS GLN ARG ILE GLU GLU ALA ARG ARG HIS GLY MSE SEQRES 14 A 170 PRO MODRES 8BBM MSE A 395 MET MODIFIED RESIDUE MODRES 8BBM MSE A 422 MET MODIFIED RESIDUE MODRES 8BBM MSE A 441 MET MODIFIED RESIDUE MODRES 8BBM MSE A 459 MET MODIFIED RESIDUE MODRES 8BBM MSE A 474 MET MODIFIED RESIDUE MODRES 8BBM MSE A 494 MET MODIFIED RESIDUE MODRES 8BBM MSE A 509 MET MODIFIED RESIDUE MODRES 8BBM MSE A 514 MET MODIFIED RESIDUE MODRES 8BBM MSE A 537 MET MODIFIED RESIDUE MODRES 8BBM MSE A 546 MET MODIFIED RESIDUE MODRES 8BBM MSE A 560 MET MODIFIED RESIDUE HET MSE A 395 8 HET MSE A 422 8 HET MSE A 441 8 HET MSE A 459 8 HET MSE A 474 8 HET MSE A 494 16 HET MSE A 509 8 HET MSE A 514 8 HET MSE A 537 8 HET MSE A 546 16 HET MSE A 560 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 HOH *114(H2 O) HELIX 1 AA1 THR A 392 LYS A 402 1 11 HELIX 2 AA2 LYS A 403 LEU A 406 5 4 HELIX 3 AA3 ASP A 407 LEU A 412 1 6 HELIX 4 AA4 SER A 416 ASN A 445 1 30 HELIX 5 AA5 SER A 457 GLY A 479 1 23 HELIX 6 AA6 LEU A 484 GLU A 506 1 23 HELIX 7 AA7 SER A 515 PHE A 528 1 14 HELIX 8 AA8 GLY A 529 PHE A 534 1 6 HELIX 9 AA9 PRO A 538 ARG A 557 1 20 LINK C LEU A 394 N MSE A 395 1555 1555 1.34 LINK C MSE A 395 N VAL A 396 1555 1555 1.34 LINK C ASP A 421 N MSE A 422 1555 1555 1.33 LINK C MSE A 422 N TRP A 423 1555 1555 1.34 LINK C HIS A 440 N MSE A 441 1555 1555 1.34 LINK C MSE A 441 N LEU A 442 1555 1555 1.34 LINK C GLU A 458 N MSE A 459 1555 1555 1.34 LINK C MSE A 459 N ASN A 460 1555 1555 1.34 LINK C VAL A 473 N MSE A 474 1555 1555 1.34 LINK C MSE A 474 N LEU A 475 1555 1555 1.34 LINK C ILE A 493 N AMSE A 494 1555 1555 1.34 LINK C ILE A 493 N BMSE A 494 1555 1555 1.34 LINK C AMSE A 494 N TYR A 495 1555 1555 1.34 LINK C BMSE A 494 N TYR A 495 1555 1555 1.34 LINK C HIS A 508 N MSE A 509 1555 1555 1.33 LINK C MSE A 509 N PRO A 510 1555 1555 1.34 LINK C ALA A 513 N MSE A 514 1555 1555 1.35 LINK C MSE A 514 N SER A 515 1555 1555 1.34 LINK C ASP A 536 N MSE A 537 1555 1555 1.34 LINK C MSE A 537 N PRO A 538 1555 1555 1.36 LINK C ARG A 545 N AMSE A 546 1555 1555 1.34 LINK C ARG A 545 N BMSE A 546 1555 1555 1.33 LINK C AMSE A 546 N GLU A 547 1555 1555 1.34 LINK C BMSE A 546 N GLU A 547 1555 1555 1.34 LINK C GLY A 559 N MSE A 560 1555 1555 1.34 LINK C MSE A 560 N PRO A 561 1555 1555 1.35 CRYST1 68.286 68.286 185.842 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014644 0.008455 0.000000 0.00000 SCALE2 0.000000 0.016910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005381 0.00000