HEADER OXIDOREDUCTASE 14-OCT-22 8BBS TITLE STRUCTURE OF AKR1C3 IN COMPLEX WITH A BILE ACID FUSED TETRAZOLE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C3; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5,17-BETA-HSD 5,3- COMPND 5 ALPHA-HSD TYPE II,BRAIN,3-ALPHA-HYDROXYSTEROID DEHYDROGENASE TYPE 2, COMPND 6 3-ALPHA-HSD TYPE 2,CHLORDECONE REDUCTASE HOMOLOG HAKRB,DIHYDRODIOL COMPND 7 DEHYDROGENASE 3,DD-3,DD3,DIHYDRODIOL DEHYDROGENASE TYPE I,HA1753, COMPND 8 PROSTAGLANDIN F SYNTHASE,PGFS,TESTOSTERONE 17-BETA-DEHYDROGENASE 5; COMPND 9 EC: 1.1.1.-,1.1.1.210,1.1.1.53,1.1.1.62,1.1.1.357,1.1.1.188, COMPND 10 1.1.1.239,1.1.1.64; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: THE N-TERMINAL SEQUENCE GSH IS A CLONING ARTEFACT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C3, DDH1, HSD17B5, KIAA0119, PGFS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B(+) KEYWDS AKR1C3, ALDO-KETO REDUCTASE, STEROID METABOLISM, BILE ACID, KEYWDS 2 TETRAZOLE, CANCER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.PETRI,J.SKERLOVA,M.MARINOVIC,J.BRYNDA,M.KUGLER,D.SKORIC,S.BEKIC, AUTHOR 2 A.S.CELIC,P.REZACOVA REVDAT 3 07-FEB-24 8BBS 1 REMARK REVDAT 2 24-MAY-23 8BBS 1 FORMUL REVDAT 1 08-MAR-23 8BBS 0 JRNL AUTH M.A.MARINOVIC,S.S.BEKIC,M.KUGLER,J.BRYNDA,J.SKERLOVA, JRNL AUTH 2 D.D.SKORIC,P.REZACOVA,E.T.PETRI,A.S.CELIC JRNL TITL X-RAY STRUCTURE OF HUMAN ALDO-KETO REDUCTASE 1C3 IN COMPLEX JRNL TITL 2 WITH A BILE ACID FUSED TETRAZOLE INHIBITOR: EXPERIMENTAL JRNL TITL 3 VALIDATION, MOLECULAR DOCKING AND STRUCTURAL ANALYSIS. JRNL REF RSC MED CHEM V. 14 341 2023 JRNL REFN ESSN 2632-8682 JRNL PMID 36846371 JRNL DOI 10.1039/D2MD00387B REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 105499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1533 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 727 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5667 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5258 ; 0.034 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7740 ; 1.743 ; 1.690 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12278 ; 2.252 ; 1.619 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;34.746 ;22.072 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1001 ;12.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;18.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6332 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1195 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8BBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 3.582 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.64 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZQ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% W/V PEG 1000, 12.5% W/V PEG REMARK 280 3350, 12.5% V/V MPD AND 0.02 M EACH OF DL-GLUTAMIC ACID REMARK 280 MONOHYDRATE, DL-ALANINE, GLYCINE, DL-LYSINE MONOHYDROCHLORIDE, REMARK 280 AND DL-SERINE; IN 0.1 M BICINE/TRIZMA BASE, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 HIS B 5 REMARK 465 SER B 320 REMARK 465 ASP B 321 REMARK 465 GLU B 322 REMARK 465 TYR B 323 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 HIS A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 57 -0.82 -142.08 REMARK 500 SER B 221 165.81 76.89 REMARK 500 ARG B 250 -154.91 -123.68 REMARK 500 ARG B 301 23.34 -144.50 REMARK 500 SER B 308 48.14 35.73 REMARK 500 SER B 313 -1.29 87.68 REMARK 500 ALA A 52 148.54 -172.34 REMARK 500 PHE A 197 79.89 -150.79 REMARK 500 SER A 221 166.79 78.18 REMARK 500 ARG A 250 -150.00 -118.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 875 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 127 OE2 REMARK 620 2 SER B 208 O 137.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 174 OE1 REMARK 620 2 HOH B 599 O 108.2 REMARK 620 3 HOH B 790 O 73.3 100.9 REMARK 620 4 HOH A 687 O 144.6 99.6 122.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 204 OD1 REMARK 620 2 HOH B 756 O 145.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 285 OE2 REMARK 620 2 HOH B 523 O 116.4 REMARK 620 3 HOH B 835 O 103.3 126.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 100 OE1 REMARK 620 2 HOH A 625 O 103.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 126 OE1 REMARK 620 2 HOH A 553 O 83.8 REMARK 620 3 HOH A 758 O 85.4 126.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 204 OD2 REMARK 620 2 HOH A 665 O 124.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 237 OE1 REMARK 620 2 HOH A 645 O 118.1 REMARK 620 3 HOH A 695 O 101.2 115.6 REMARK 620 N 1 2 DBREF 8BBS B 1 323 UNP P42330 AK1C3_HUMAN 1 323 DBREF 8BBS A 1 323 UNP P42330 AK1C3_HUMAN 1 323 SEQADV 8BBS GLY B -2 UNP P42330 EXPRESSION TAG SEQADV 8BBS SER B -1 UNP P42330 EXPRESSION TAG SEQADV 8BBS HIS B 0 UNP P42330 EXPRESSION TAG SEQADV 8BBS GLY A -2 UNP P42330 EXPRESSION TAG SEQADV 8BBS SER A -1 UNP P42330 EXPRESSION TAG SEQADV 8BBS HIS A 0 UNP P42330 EXPRESSION TAG SEQRES 1 B 326 GLY SER HIS MET ASP SER LYS HIS GLN CYS VAL LYS LEU SEQRES 2 B 326 ASN ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR SEQRES 3 B 326 TYR ALA PRO PRO GLU VAL PRO ARG SER LYS ALA LEU GLU SEQRES 4 B 326 VAL THR LYS LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE SEQRES 5 B 326 ASP SER ALA HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY SEQRES 6 B 326 LEU ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS SEQRES 7 B 326 ARG GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER THR SEQRES 8 B 326 PHE HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SEQRES 9 B 326 SER LEU LYS LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR SEQRES 10 B 326 LEU ILE HIS SER PRO MET SER LEU LYS PRO GLY GLU GLU SEQRES 11 B 326 LEU SER PRO THR ASP GLU ASN GLY LYS VAL ILE PHE ASP SEQRES 12 B 326 ILE VAL ASP LEU CYS THR THR TRP GLU ALA MET GLU LYS SEQRES 13 B 326 CYS LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER SEQRES 14 B 326 ASN PHE ASN ARG ARG GLN LEU GLU MET ILE LEU ASN LYS SEQRES 15 B 326 PRO GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU SEQRES 16 B 326 CYS HIS PRO TYR PHE ASN ARG SER LYS LEU LEU ASP PHE SEQRES 17 B 326 CYS LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA SEQRES 18 B 326 LEU GLY SER GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SEQRES 19 B 326 SER PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU SEQRES 20 B 326 ALA LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU SEQRES 21 B 326 ARG TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SEQRES 22 B 326 SER TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL SEQRES 23 B 326 PHE GLU PHE GLN LEU THR ALA GLU ASP MET LYS ALA ILE SEQRES 24 B 326 ASP GLY LEU ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SEQRES 25 B 326 SER PHE ALA SER HIS PRO ASN TYR PRO TYR SER ASP GLU SEQRES 26 B 326 TYR SEQRES 1 A 326 GLY SER HIS MET ASP SER LYS HIS GLN CYS VAL LYS LEU SEQRES 2 A 326 ASN ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR SEQRES 3 A 326 TYR ALA PRO PRO GLU VAL PRO ARG SER LYS ALA LEU GLU SEQRES 4 A 326 VAL THR LYS LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE SEQRES 5 A 326 ASP SER ALA HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY SEQRES 6 A 326 LEU ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS SEQRES 7 A 326 ARG GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER THR SEQRES 8 A 326 PHE HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SEQRES 9 A 326 SER LEU LYS LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR SEQRES 10 A 326 LEU ILE HIS SER PRO MET SER LEU LYS PRO GLY GLU GLU SEQRES 11 A 326 LEU SER PRO THR ASP GLU ASN GLY LYS VAL ILE PHE ASP SEQRES 12 A 326 ILE VAL ASP LEU CYS THR THR TRP GLU ALA MET GLU LYS SEQRES 13 A 326 CYS LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER SEQRES 14 A 326 ASN PHE ASN ARG ARG GLN LEU GLU MET ILE LEU ASN LYS SEQRES 15 A 326 PRO GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU SEQRES 16 A 326 CYS HIS PRO TYR PHE ASN ARG SER LYS LEU LEU ASP PHE SEQRES 17 A 326 CYS LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA SEQRES 18 A 326 LEU GLY SER GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SEQRES 19 A 326 SER PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU SEQRES 20 A 326 ALA LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU SEQRES 21 A 326 ARG TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SEQRES 22 A 326 SER TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL SEQRES 23 A 326 PHE GLU PHE GLN LEU THR ALA GLU ASP MET LYS ALA ILE SEQRES 24 A 326 ASP GLY LEU ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SEQRES 25 A 326 SER PHE ALA SER HIS PRO ASN TYR PRO TYR SER ASP GLU SEQRES 26 A 326 TYR HET NAP B 401 48 HET QBO B 402 31 HET NA B 403 1 HET NA B 404 1 HET NA B 405 1 HET NA B 406 1 HET NAP A 401 48 HET QBO A 402 31 HET NA A 403 1 HET NA A 404 1 HET NA A 405 1 HET NA A 406 1 HET NA A 407 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM QBO (4~{R})-4-[(1~{R},2~{S},5~{R},6~{R},13~{S},14~{S}, HETNAM 2 QBO 17~{R},19~{R})-6,14-DIMETHYL-17-OXIDANYL-7,8,9,10- HETNAM 3 QBO TETRAZAPENTACYCLO[11.8.0.0^{2,6}.0^{7,11}.0^{14, HETNAM 4 QBO 19}]HENICOSA-8,10-DIEN-5-YL]PENTANOIC ACID HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 QBO 2(C24 H38 N4 O3) FORMUL 5 NA 9(NA 1+) FORMUL 16 HOH *727(H2 O) HELIX 1 AA1 ARG B 31 GLY B 45 1 15 HELIX 2 AA2 ALA B 52 ASN B 56 5 5 HELIX 3 AA3 ASN B 57 ASP B 71 1 15 HELIX 4 AA4 LYS B 75 ILE B 79 5 5 HELIX 5 AA5 TRP B 86 HIS B 90 5 5 HELIX 6 AA6 ARG B 91 GLN B 107 1 17 HELIX 7 AA7 ASP B 143 ALA B 157 1 15 HELIX 8 AA8 ASN B 169 ASN B 178 1 10 HELIX 9 AA9 ARG B 199 LYS B 209 1 11 HELIX 10 AB1 VAL B 234 GLU B 237 5 4 HELIX 11 AB2 ASP B 238 LYS B 249 1 12 HELIX 12 AB3 THR B 251 ARG B 263 1 13 HELIX 13 AB4 ASN B 273 VAL B 281 1 9 HELIX 14 AB5 GLN B 282 PHE B 286 5 5 HELIX 15 AB6 THR B 289 GLY B 298 1 10 HELIX 16 AB7 SER B 308 ALA B 312 5 5 HELIX 17 AB8 ARG A 31 GLY A 45 1 15 HELIX 18 AB9 ALA A 52 ASN A 56 5 5 HELIX 19 AC1 ASN A 57 ASP A 71 1 15 HELIX 20 AC2 LYS A 75 ILE A 79 5 5 HELIX 21 AC3 TRP A 86 HIS A 90 5 5 HELIX 22 AC4 ARG A 91 GLN A 107 1 17 HELIX 23 AC5 ASP A 143 ALA A 157 1 15 HELIX 24 AC6 ASN A 169 ASN A 178 1 10 HELIX 25 AC7 ARG A 199 LYS A 209 1 11 HELIX 26 AC8 VAL A 234 GLU A 237 5 4 HELIX 27 AC9 ASP A 238 LYS A 249 1 12 HELIX 28 AD1 THR A 251 ARG A 263 1 13 HELIX 29 AD2 ASN A 273 VAL A 281 1 9 HELIX 30 AD3 GLN A 282 PHE A 286 5 5 HELIX 31 AD4 THR A 289 GLY A 298 1 10 HELIX 32 AD5 SER A 308 ALA A 312 5 5 SHEET 1 AA1 2 CYS B 7 LYS B 9 0 SHEET 2 AA1 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 AA2 9 LEU B 19 GLY B 22 0 SHEET 2 AA2 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 AA2 9 PHE B 80 LEU B 85 1 O PHE B 80 N ILE B 49 SHEET 4 AA2 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 AA2 9 ALA B 160 SER B 166 1 O LYS B 161 N VAL B 111 SHEET 6 AA2 9 CYS B 188 GLU B 192 1 O CYS B 188 N VAL B 165 SHEET 7 AA2 9 VAL B 212 TYR B 216 1 O VAL B 214 N VAL B 191 SHEET 8 AA2 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 AA2 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 SHEET 1 AA3 2 CYS A 7 LYS A 9 0 SHEET 2 AA3 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 AA4 9 LEU A 19 GLY A 22 0 SHEET 2 AA4 9 HIS A 48 ASP A 50 1 O ASP A 50 N PHE A 21 SHEET 3 AA4 9 PHE A 80 LEU A 85 1 O PHE A 80 N ILE A 49 SHEET 4 AA4 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 AA4 9 ALA A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 AA4 9 CYS A 188 GLU A 192 1 O CYS A 188 N VAL A 165 SHEET 7 AA4 9 VAL A 212 TYR A 216 1 O VAL A 214 N VAL A 191 SHEET 8 AA4 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 AA4 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 LINK OE2 GLU B 127 NA NA B 405 1555 1555 2.35 LINK OE1 GLU B 174 NA NA B 406 1555 1555 2.55 LINK OD1AASP B 204 NA NA B 403 1555 1555 2.33 LINK O SER B 208 NA NA B 405 1555 1455 2.71 LINK OE2 GLU B 285 NA NA B 404 1555 1555 2.43 LINK NA NA B 403 O HOH B 756 1555 1455 2.65 LINK NA NA B 404 O HOH B 523 1555 1555 2.67 LINK NA NA B 404 O HOH B 835 1555 1555 2.75 LINK NA NA B 406 O HOH B 599 1555 1555 2.67 LINK NA NA B 406 O HOH B 790 1555 1555 2.76 LINK NA NA B 406 O HOH A 687 1555 1545 2.91 LINK OE1 GLU A 100 NA NA A 406 1555 1555 2.44 LINK OE1 GLU A 126 NA NA A 404 1555 1555 2.17 LINK OD2 ASP A 204 NA NA A 405 1555 1555 2.60 LINK OD2 ASP A 210 NA NA A 403 1555 1555 2.40 LINK OE1 GLU A 237 NA NA A 407 1555 1555 2.53 LINK NA NA A 404 O HOH A 553 1555 1555 2.49 LINK NA NA A 404 O HOH A 758 1555 1555 2.51 LINK NA NA A 405 O HOH A 665 1555 1555 3.03 LINK NA NA A 406 O HOH A 625 1555 1555 2.54 LINK NA NA A 407 O HOH A 645 1555 1555 3.11 LINK NA NA A 407 O HOH A 695 1555 1555 2.77 CRYST1 39.462 51.413 77.879 77.26 86.74 77.63 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025341 -0.005558 -0.000260 0.00000 SCALE2 0.000000 0.019913 -0.004356 0.00000 SCALE3 0.000000 0.000000 0.013165 0.00000