HEADER SIGNALING PROTEIN 15-OCT-22 8BC7 TITLE CEREBLON ISOFORM 4 FROM MAGNETOSPIRILLUM GRYPHISWALDENSE IN COMPLEX AN TITLE 2 AMINOGLUTARIMIDE DEGRON PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEREBLON ISOFORM 4; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHE-PHE-GLU-GLN-MET-GLN-QCI; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE LAST RESIDUE IS A CYCLIZED GLUTAMINE, CALLED COMPND 10 AMINOGLUTARIMIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE; SOURCE 3 ORGANISM_TAXID: 55518; SOURCE 4 GENE: MGR_0879; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS PROTEIN DAMAGE, PROTEIN AGEING, PROTEIN CHAIN BREAK, KEYWDS 2 AMINOGLUTARIMIDE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HEIM,R.ALBRECHT,A.K.SPRING,M.D.HARTMANN REVDAT 2 07-FEB-24 8BC7 1 REMARK REVDAT 1 11-JAN-23 8BC7 0 JRNL AUTH C.HEIM,A.K.SPRING,S.KIRCHGASSNER,D.SCHWARZER,M.D.HARTMANN JRNL TITL IDENTIFICATION AND STRUCTURAL BASIS OF C-TERMINAL CYCLIC JRNL TITL 2 IMIDES AS NATURAL DEGRONS FOR CEREBLON. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 637 66 2022 JRNL REFN ESSN 1090-2104 JRNL PMID 36375252 JRNL DOI 10.1016/J.BBRC.2022.11.001 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.998 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2426 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69500 REMARK 3 B22 (A**2) : 1.39600 REMARK 3 B33 (A**2) : -0.70100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.199 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2562 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2272 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3473 ; 1.760 ; 1.625 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5199 ; 1.458 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 7.055 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;33.414 ;19.930 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;13.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.528 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2986 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 698 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 430 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 71 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1186 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1236 ; 1.789 ; 2.466 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1235 ; 1.785 ; 2.467 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1535 ; 2.623 ; 3.676 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1536 ; 2.623 ; 3.676 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1326 ; 2.784 ; 2.859 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1327 ; 2.782 ; 2.858 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1937 ; 4.340 ; 4.168 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1938 ; 4.339 ; 4.167 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 122 NULL REMARK 3 1 B 20 B 122 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 18 A 123 NULL REMARK 3 2 C 18 C 123 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 B 20 B 123 NULL REMARK 3 3 C 20 C 123 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 123 REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0461 17.6601 2.6101 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0753 REMARK 3 T33: 0.0527 T12: 0.0224 REMARK 3 T13: -0.0239 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.3238 L22: 2.5686 REMARK 3 L33: 4.5002 L12: -0.0723 REMARK 3 L13: 0.6864 L23: 1.3918 REMARK 3 S TENSOR REMARK 3 S11: 0.0600 S12: 0.0659 S13: -0.2782 REMARK 3 S21: -0.0511 S22: -0.0360 S23: 0.1656 REMARK 3 S31: 0.2240 S32: 0.0274 S33: -0.0240 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 123 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0231 7.4183 23.9835 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0349 REMARK 3 T33: 0.0044 T12: -0.0099 REMARK 3 T13: 0.0065 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 3.1129 L22: 3.4346 REMARK 3 L33: 2.4965 L12: -1.1718 REMARK 3 L13: 0.4360 L23: -0.6561 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.0370 S13: -0.0426 REMARK 3 S21: -0.0228 S22: 0.0351 S23: 0.0303 REMARK 3 S31: 0.0162 S32: 0.0631 S33: -0.0604 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 18 C 123 REMARK 3 RESIDUE RANGE : C 201 C 201 REMARK 3 ORIGIN FOR THE GROUP (A): 28.4794 -5.8924 -6.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.4149 REMARK 3 T33: 0.2496 T12: -0.0357 REMARK 3 T13: 0.0352 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 3.8352 L22: 4.2176 REMARK 3 L33: 3.6325 L12: 2.2015 REMARK 3 L13: 1.3638 L23: 0.7303 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: -0.2385 S13: -0.1449 REMARK 3 S21: 0.0510 S22: 0.0345 S23: 0.6484 REMARK 3 S31: 0.3089 S32: -0.7600 S33: -0.0904 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 8 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3557 19.3146 30.7708 REMARK 3 T TENSOR REMARK 3 T11: 0.2660 T22: 0.2436 REMARK 3 T33: 0.2775 T12: -0.0126 REMARK 3 T13: -0.0179 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.1884 L22: 8.5148 REMARK 3 L33: 0.5602 L12: 3.1649 REMARK 3 L13: 0.8068 L23: 2.1753 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: -0.0602 S13: 0.1239 REMARK 3 S21: 0.1282 S22: -0.0903 S23: 0.1949 REMARK 3 S31: 0.0017 S32: -0.0081 S33: 0.0473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.719 REMARK 200 RESOLUTION RANGE LOW (A) : 49.446 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.05 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.54 REMARK 200 R MERGE FOR SHELL (I) : 1.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4V2Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M (NH4)H2PO4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.30300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.52950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.52950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.30300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 ASP A 124 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 GLN B 8 REMARK 465 ASN B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLN B 12 REMARK 465 MET B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 PRO B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 ASP B 124 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 ALA C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 GLN C 8 REMARK 465 ASN C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLN C 12 REMARK 465 MET C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 ALA C 16 REMARK 465 PRO C 17 REMARK 465 MET C 40 REMARK 465 GLY C 41 REMARK 465 GLY C 42 REMARK 465 ASP C 43 REMARK 465 HIS C 44 REMARK 465 GLY C 53 REMARK 465 MET C 54 REMARK 465 ILE C 55 REMARK 465 GLU C 102 REMARK 465 GLY C 103 REMARK 465 GLY C 104 REMARK 465 SER C 105 REMARK 465 GLN C 106 REMARK 465 PRO C 107 REMARK 465 GLN C 108 REMARK 465 ASP C 124 REMARK 465 LYS D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ARG C 57 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 77 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 PHE D 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 4 CG CD OE1 OE2 REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 302 O HOH A 310 2.12 REMARK 500 OE1 GLU A 102 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 309 O HOH B 336 3645 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN D 7 C QCI D 8 N 0.253 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 31 -53.72 -122.53 REMARK 500 PHE D 3 -3.98 -59.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 27 SG 112.0 REMARK 620 3 CYS A 90 SG 108.5 101.6 REMARK 620 4 CYS A 93 SG 109.3 112.7 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 24 SG REMARK 620 2 CYS B 27 SG 113.1 REMARK 620 3 CYS B 90 SG 111.0 103.5 REMARK 620 4 CYS B 93 SG 102.7 113.9 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 24 SG REMARK 620 2 CYS C 27 SG 114.1 REMARK 620 3 CYS C 90 SG 109.4 101.9 REMARK 620 4 CYS C 93 SG 105.5 113.6 112.5 REMARK 620 N 1 2 3 DBREF 8BC7 A 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8BC7 B 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8BC7 C 1 124 UNP A4TVL0 A4TVL0_9PROT 1 124 DBREF 8BC7 D 1 8 PDB 8BC7 8BC7 1 8 SEQRES 1 A 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 A 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 A 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 A 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 A 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 A 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 A 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 A 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 A 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 A 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 B 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 B 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 B 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 B 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 B 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 B 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 B 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 B 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 B 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 B 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 C 124 MET PRO LEU ASP ALA GLY GLY GLN ASN SER THR GLN MET SEQRES 2 C 124 VAL LEU ALA PRO GLY ALA SER ILE PHE ARG CYS ARG GLN SEQRES 3 C 124 CYS GLY GLN THR ILE SER ARG ARG ASP TRP LEU LEU PRO SEQRES 4 C 124 MET GLY GLY ASP HIS GLU HIS VAL VAL PHE ASN PRO ALA SEQRES 5 C 124 GLY MET ILE PHE ARG VAL TRP CYS PHE SER LEU ALA GLN SEQRES 6 C 124 GLY LEU ARG LEU ILE GLY ALA PRO SER GLY GLU PHE SER SEQRES 7 C 124 TRP PHE LYS GLY TYR ASP TRP THR ILE ALA LEU CYS GLY SEQRES 8 C 124 GLN CYS GLY SER HIS LEU GLY TRP HIS TYR GLU GLY GLY SEQRES 9 C 124 SER GLN PRO GLN THR PHE PHE GLY LEU ILE LYS ASP ARG SEQRES 10 C 124 LEU ALA GLU GLY PRO ALA ASP SEQRES 1 D 8 LYS PHE PHE GLU GLN MET GLN QCI HET QCI D 8 9 HET ZN A 201 1 HET EF2 A 202 19 HET ZN B 201 1 HET ZN C 201 1 HET EF2 C 202 19 HETNAM QCI L-2-AMINOGLUTARIMIDE HETNAM ZN ZINC ION HETNAM EF2 S-THALIDOMIDE HETSYN QCI (3S)-3-AZANYLPIPERIDINE-2,6-DIONE; (S)-2- HETSYN 2 QCI AMINOGLUTARIMIDE FORMUL 4 QCI C5 H8 N2 O2 FORMUL 5 ZN 3(ZN 2+) FORMUL 6 EF2 2(C13 H10 N2 O4) FORMUL 10 HOH *94(H2 O) HELIX 1 AA1 ASP A 35 LEU A 37 5 3 HELIX 2 AA2 PRO A 39 ASP A 43 5 5 HELIX 3 AA3 ASP B 35 LEU B 37 5 3 HELIX 4 AA4 PRO B 39 ASP B 43 5 5 HELIX 5 AA5 ASP C 35 LEU C 37 5 3 SHEET 1 AA1 3 THR A 30 ARG A 33 0 SHEET 2 AA1 3 ILE A 21 CYS A 24 -1 N PHE A 22 O SER A 32 SHEET 3 AA1 3 LEU A 118 GLY A 121 -1 O GLY A 121 N ILE A 21 SHEET 1 AA2 6 GLU A 45 PHE A 49 0 SHEET 2 AA2 6 ILE A 55 PHE A 61 -1 O VAL A 58 N HIS A 46 SHEET 3 AA2 6 PHE A 110 ILE A 114 -1 O LEU A 113 N TRP A 59 SHEET 4 AA2 6 HIS A 96 GLU A 102 -1 N TYR A 101 O PHE A 110 SHEET 5 AA2 6 ASP A 84 CYS A 90 -1 N ASP A 84 O GLU A 102 SHEET 6 AA2 6 LEU A 67 SER A 74 -1 N SER A 74 O TRP A 85 SHEET 1 AA3 3 THR B 30 ARG B 33 0 SHEET 2 AA3 3 ILE B 21 CYS B 24 -1 N PHE B 22 O SER B 32 SHEET 3 AA3 3 LEU B 118 GLY B 121 -1 O GLY B 121 N ILE B 21 SHEET 1 AA4 6 GLU B 45 PHE B 49 0 SHEET 2 AA4 6 ILE B 55 PHE B 61 -1 O VAL B 58 N HIS B 46 SHEET 3 AA4 6 PHE B 110 ILE B 114 -1 O PHE B 111 N PHE B 61 SHEET 4 AA4 6 HIS B 96 GLU B 102 -1 N TYR B 101 O PHE B 110 SHEET 5 AA4 6 ASP B 84 CYS B 90 -1 N ASP B 84 O GLU B 102 SHEET 6 AA4 6 LEU B 67 SER B 74 -1 N SER B 74 O TRP B 85 SHEET 1 AA5 3 THR C 30 ARG C 33 0 SHEET 2 AA5 3 ILE C 21 CYS C 24 -1 N PHE C 22 O ILE C 31 SHEET 3 AA5 3 LEU C 118 GLY C 121 -1 O GLY C 121 N ILE C 21 SHEET 1 AA6 6 HIS C 46 VAL C 47 0 SHEET 2 AA6 6 ARG C 57 PHE C 61 -1 O VAL C 58 N HIS C 46 SHEET 3 AA6 6 PHE C 111 ILE C 114 -1 O LEU C 113 N TRP C 59 SHEET 4 AA6 6 HIS C 96 HIS C 100 -1 N LEU C 97 O ILE C 114 SHEET 5 AA6 6 TRP C 85 CYS C 90 -1 N ALA C 88 O GLY C 98 SHEET 6 AA6 6 LEU C 67 SER C 74 -1 N SER C 74 O TRP C 85 LINK C GLN D 7 N QCI D 8 1555 1555 1.59 LINK SG CYS A 24 ZN ZN A 201 1555 1555 2.28 LINK SG CYS A 27 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 90 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 93 ZN ZN A 201 1555 1555 2.32 LINK SG CYS B 24 ZN ZN B 201 1555 1555 2.38 LINK SG CYS B 27 ZN ZN B 201 1555 1555 2.34 LINK SG CYS B 90 ZN ZN B 201 1555 1555 2.31 LINK SG CYS B 93 ZN ZN B 201 1555 1555 2.31 LINK SG CYS C 24 ZN ZN C 201 1555 1555 2.39 LINK SG CYS C 27 ZN ZN C 201 1555 1555 2.31 LINK SG CYS C 90 ZN ZN C 201 1555 1555 2.34 LINK SG CYS C 93 ZN ZN C 201 1555 1555 2.31 CISPEP 1 GLN A 106 PRO A 107 0 -1.56 CISPEP 2 GLN B 106 PRO B 107 0 -0.58 CRYST1 56.606 59.450 89.059 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011229 0.00000