HEADER VIRAL PROTEIN 16-OCT-22 8BCK TITLE RECOMBINANT TIPULA OLERACEA NUDIVIRUS POLYHEDRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOBP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TIPULA OLERACEA NUDIVIRUS; SOURCE 3 ORGANISM_TAXID: 1546257; SOURCE 4 GENE: MOBP, TONV_059; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS NUDIVIRUS, POLYHEDRA, OCCLUSION BODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KEOWN,J.M.GRIMES REVDAT 3 06-NOV-24 8BCK 1 REMARK REVDAT 2 24-JAN-24 8BCK 1 JRNL REMARK REVDAT 1 12-JUL-23 8BCK 0 JRNL AUTH J.R.KEOWN,A.D.CRAWSHAW,J.TRINCAO,L.CARRIQUE,R.J.GILDEA, JRNL AUTH 2 S.HORRELL,A.J.WARREN,D.AXFORD,R.OWEN,G.EVANS,A.BEZIER, JRNL AUTH 3 P.METCALF,J.M.GRIMES JRNL TITL ATOMIC STRUCTURE OF A NUDIVIRUS OCCLUSION BODY PROTEIN JRNL TITL 2 DETERMINED FROM A 70-YEAR-OLD CRYSTAL SAMPLE. JRNL REF NAT COMMUN V. 14 4160 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37443157 JRNL DOI 10.1038/S41467-023-39819-1 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5700 - 4.2200 1.00 1294 144 0.1979 0.2323 REMARK 3 2 4.2200 - 3.3500 1.00 1203 138 0.1620 0.2278 REMARK 3 3 3.3500 - 2.9300 1.00 1218 136 0.1664 0.2149 REMARK 3 4 2.9300 - 2.6600 1.00 1183 130 0.1895 0.2138 REMARK 3 5 2.6600 - 2.4700 1.00 1176 137 0.1639 0.2062 REMARK 3 6 2.4700 - 2.3200 1.00 1174 135 0.1774 0.2109 REMARK 3 7 2.3200 - 2.2100 1.00 1183 130 0.1727 0.2204 REMARK 3 8 2.2100 - 2.1100 1.00 1169 132 0.1966 0.2589 REMARK 3 9 2.1100 - 2.0300 1.00 1167 132 0.2126 0.2549 REMARK 3 10 2.0300 - 1.9600 1.00 1160 132 0.2766 0.3518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.966 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1760 REMARK 3 ANGLE : 0.625 2395 REMARK 3 CHIRALITY : 0.038 282 REMARK 3 PLANARITY : 0.004 300 REMARK 3 DIHEDRAL : 4.512 232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0343 52.4594 22.4627 REMARK 3 T TENSOR REMARK 3 T11: 0.3932 T22: 0.3484 REMARK 3 T33: 0.3221 T12: -0.0470 REMARK 3 T13: -0.0652 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 7.5777 L22: 7.9614 REMARK 3 L33: 4.1761 L12: -1.9050 REMARK 3 L13: -0.8050 L23: -5.3292 REMARK 3 S TENSOR REMARK 3 S11: 0.2856 S12: 0.4406 S13: -0.0566 REMARK 3 S21: -0.9676 S22: 0.2707 S23: 1.2239 REMARK 3 S31: 0.0100 S32: -0.5378 S33: -0.7212 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4701 42.3179 27.3847 REMARK 3 T TENSOR REMARK 3 T11: 0.5164 T22: 0.4992 REMARK 3 T33: 0.7101 T12: 0.0881 REMARK 3 T13: -0.0856 T23: -0.1484 REMARK 3 L TENSOR REMARK 3 L11: 7.7279 L22: 4.6266 REMARK 3 L33: 7.7264 L12: -1.8876 REMARK 3 L13: -0.7197 L23: 1.3661 REMARK 3 S TENSOR REMARK 3 S11: -0.5078 S12: -0.2562 S13: -0.2026 REMARK 3 S21: -0.3560 S22: -0.4475 S23: 1.9402 REMARK 3 S31: -0.2503 S32: -1.4199 S33: 0.8827 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7332 39.8214 13.8527 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.1327 REMARK 3 T33: 0.1579 T12: 0.0388 REMARK 3 T13: -0.0084 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.2574 L22: 6.9396 REMARK 3 L33: 3.5848 L12: 2.3632 REMARK 3 L13: 1.6315 L23: -0.2627 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: 0.0209 S13: 0.1175 REMARK 3 S21: 0.2797 S22: 0.0108 S23: -0.0493 REMARK 3 S31: -0.1439 S32: -0.0018 S33: 0.0380 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7742 20.7573 7.5626 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.1922 REMARK 3 T33: 0.2071 T12: 0.0270 REMARK 3 T13: -0.0636 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 6.3750 L22: 7.1812 REMARK 3 L33: 4.6804 L12: -4.0897 REMARK 3 L13: -4.7927 L23: 5.2808 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: 0.0094 S13: -0.2602 REMARK 3 S21: 0.2874 S22: -0.0047 S23: 0.2840 REMARK 3 S31: 0.5863 S32: -0.2784 S33: 0.1259 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5778 20.9531 14.2675 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.2285 REMARK 3 T33: 0.2553 T12: -0.0259 REMARK 3 T13: -0.0146 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.0321 L22: 2.6116 REMARK 3 L33: 1.5593 L12: -2.3199 REMARK 3 L13: 1.3129 L23: -1.5395 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: 0.1661 S13: -0.2213 REMARK 3 S21: -0.1591 S22: -0.0394 S23: -0.2882 REMARK 3 S31: 0.1434 S32: 0.0407 S33: -0.0739 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3805 22.4296 -2.2893 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1719 REMARK 3 T33: 0.1319 T12: 0.0303 REMARK 3 T13: 0.0115 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 4.4420 L22: 8.8479 REMARK 3 L33: 6.4440 L12: 5.1535 REMARK 3 L13: 4.6116 L23: 7.3817 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.0746 S13: 0.0426 REMARK 3 S21: -0.0986 S22: -0.1182 S23: 0.0769 REMARK 3 S31: -0.1117 S32: -0.2447 S33: 0.1533 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6731 2.8474 -2.8623 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.2677 REMARK 3 T33: 0.3177 T12: 0.0513 REMARK 3 T13: -0.0618 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.5778 L22: 4.4071 REMARK 3 L33: 1.5558 L12: 1.3804 REMARK 3 L13: -1.0158 L23: -1.1618 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.2644 S13: -0.5329 REMARK 3 S21: 0.5882 S22: -0.0202 S23: -0.5876 REMARK 3 S31: -0.2499 S32: 0.0438 S33: 0.0764 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5530 18.1118 2.7715 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.2213 REMARK 3 T33: 0.1482 T12: 0.0079 REMARK 3 T13: 0.0126 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.6875 L22: 9.0671 REMARK 3 L33: 0.7421 L12: 0.7504 REMARK 3 L13: 0.0349 L23: 0.0707 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.0835 S13: -0.1644 REMARK 3 S21: 0.0665 S22: -0.0025 S23: 0.1188 REMARK 3 S31: 0.2054 S32: -0.0391 S33: -0.0092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5498 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2.MULTIPLEX REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13279 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 46.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 160.7 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8BC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN CRYSTALLISES IN CELLS., REMARK 280 TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.52133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.26067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.26067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.52133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 TYR A 3 REMARK 465 LEU A 4 REMARK 465 CYS A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 TYR A 8 REMARK 465 GLY A 165 REMARK 465 ILE A 166 REMARK 465 CYS A 167 REMARK 465 TYR A 168 REMARK 465 GLY A 169 REMARK 465 GLU A 170 REMARK 465 LYS A 171 REMARK 465 ASP A 172 REMARK 465 TYR A 173 REMARK 465 ASN A 174 REMARK 465 ARG A 175 REMARK 465 PHE A 176 REMARK 465 GLU A 177 REMARK 465 THR A 237 REMARK 465 LYS A 238 REMARK 465 VAL A 239 REMARK 465 CYS A 240 REMARK 465 CYS A 241 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 28 ND2 ASN A 191 3665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 -16.29 83.51 REMARK 500 THR A 93 -46.85 82.09 REMARK 500 THR A 98 -122.37 -126.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 140 O REMARK 620 2 ASP A 140 OD1 66.5 REMARK 620 3 ASN A 143 OD1 84.1 117.9 REMARK 620 4 ASN A 148 O 111.7 82.6 158.6 REMARK 620 5 HOH A 409 O 142.9 143.1 63.0 97.1 REMARK 620 6 HOH A 440 O 85.2 138.3 87.0 80.3 76.9 REMARK 620 N 1 2 3 4 5 DBREF1 8BCK A 1 241 UNP A0A0B4VFQ3_9VIRU DBREF2 8BCK A A0A0B4VFQ3 1 241 SEQRES 1 A 241 MET GLY TYR LEU CYS ASN ASP TYR GLY TYR GLU PRO ASN SEQRES 2 A 241 VAL ASP TYR PRO ASN ALA SER HIS ALA GLY LEU TYR ASP SEQRES 3 A 241 ARG SER LYS GLN PRO TYR VAL ASP THR ALA ILE GLY PRO SEQRES 4 A 241 LYS THR THR ILE GLN PHE ASP HIS VAL PHE ILE LYS SER SEQRES 5 A 241 ASP PHE LYS THR TRP LEU ALA HIS ASN GLN ASP GLU ALA SEQRES 6 A 241 ILE LEU LEU ILE ARG LEU TYR GLU LEU GLY LEU LEU LEU SEQRES 7 A 241 GLN GLY ARG SER ASP SER PHE LEU GLU PHE TYR ASN ASN SEQRES 8 A 241 THR THR TYR ILE THR ARG THR ASP SER LYS GLN PRO PHE SEQRES 9 A 241 LEU ASN LYS TYR GLY LYS LEU VAL ASP THR THR SER VAL SEQRES 10 A 241 THR CYS LEU ASP ILE PHE LEU SER VAL VAL LEU PHE ALA SEQRES 11 A 241 LEU ASN GLN ILE ASP SER LEU ILE CYS ASP PHE LYS ASN SEQRES 12 A 241 THR PRO TRP ILE ASN LEU SER LYS GLU HIS LYS LYS ILE SEQRES 13 A 241 TYR GLU LEU VAL ARG GLY ILE PHE GLY ILE CYS TYR GLY SEQRES 14 A 241 GLU LYS ASP TYR ASN ARG PHE GLU TYR CYS PRO PHE ASP SEQRES 15 A 241 ALA ASN SER THR ALA SER ALA LEU ASN VAL ASN ALA THR SEQRES 16 A 241 LEU ASN ALA LYS LYS THR ILE GLU LEU ILE THR CYS GLY SEQRES 17 A 241 LEU ILE ARG ALA LEU ILE ALA TYR ALA ASN LEU VAL THR SEQRES 18 A 241 ALA PHE SER ALA ASP LYS THR ALA LEU LEU HIS GLU ILE SEQRES 19 A 241 LEU LEU THR LYS VAL CYS CYS HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *70(H2 O) HELIX 1 AA1 GLU A 11 TYR A 16 1 6 HELIX 2 AA2 TYR A 16 GLY A 23 1 8 HELIX 3 AA3 TYR A 32 ALA A 36 5 5 HELIX 4 AA4 GLY A 38 LYS A 40 5 3 HELIX 5 AA5 SER A 52 ASN A 61 1 10 HELIX 6 AA6 ASN A 61 GLY A 80 1 20 HELIX 7 AA7 ARG A 81 GLU A 87 1 7 HELIX 8 AA8 LYS A 101 ASP A 113 1 13 HELIX 9 AA9 SER A 116 ASN A 143 1 28 HELIX 10 AB1 SER A 150 PHE A 164 1 15 HELIX 11 AB2 ALA A 183 LEU A 235 1 53 SHEET 1 AA1 2 THR A 42 PHE A 45 0 SHEET 2 AA1 2 VAL A 48 LYS A 51 -1 O ILE A 50 N ILE A 43 SSBOND 1 CYS A 119 CYS A 179 1555 1665 2.05 LINK O ASP A 140 CA CA A 301 1555 1555 2.36 LINK OD1 ASP A 140 CA CA A 301 1555 1555 2.49 LINK OD1 ASN A 143 CA CA A 301 1555 1555 2.52 LINK O ASN A 148 CA CA A 301 1555 1555 2.32 LINK CA CA A 301 O HOH A 409 1555 1555 2.45 LINK CA CA A 301 O HOH A 440 1555 1555 2.56 CRYST1 53.772 53.772 105.782 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018597 0.010737 0.000000 0.00000 SCALE2 0.000000 0.021474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009453 0.00000