HEADER METAL BINDING PROTEIN 18-OCT-22 8BD2 TITLE CALCIUM-BOUND CALMODULIN VARIANT G113R COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ONLY THE C-LOBE OF CALMODULIN (FROM SER81 TO LYS 148) COMPND 6 WAS ISOTOPICALLY LABELLED, THUS RESONANCE ASSIGNMENT AND STRUCTURE COMPND 7 WERE ONLY DETERMINED FOR THE C-LOBE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM3, CALML2, CAM3, CAMC, CAMIII; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALMODULIN CA-BINDING PROTEIN CA-SIGNALLING PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.WIMMER,C.V.HOLLER,N.M.PETERSSON,H.IWAI,M.A.NIEMELAE,M.BROHUS, AUTHOR 2 M.T.OVERGAARD REVDAT 2 17-JAN-24 8BD2 1 JRNL REVDAT 1 08-NOV-23 8BD2 0 JRNL AUTH C.V.HOLLER,N.M.PETERSSON,M.BROHUS,M.A.NIEMELA,E.D.IVERSEN, JRNL AUTH 2 M.T.OVERGAARD,H.IWAI,R.WIMMER JRNL TITL ALLOSTERIC CHANGES IN PROTEIN STABILITY AND DYNAMICS AS JRNL TITL 2 PATHOGENIC MECHANISM FOR CALMODULIN VARIANTS NOT AFFECTING JRNL TITL 3 CA 2+ COORDINATING RESIDUES. JRNL REF CELL CALCIUM V. 117 02831 2023 JRNL REFN ISSN 1532-1991 JRNL PMID 37995470 JRNL DOI 10.1016/J.CECA.2023.102831 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : YASARA 20.12.24 REMARK 3 AUTHORS : ELMAR KRIEGER YASARA BIOSCIENCE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126105. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.1 REMARK 210 PH : 6.69 REMARK 210 IONIC STRENGTH : 127 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 MM POTASSIUM CHLORIDE, 5 MM REMARK 210 CALCIUM CHLORIDE, 2 MM SODIUM REMARK 210 AZIDE, 20 MM HEPES, 0.1 MM 2,2,3, REMARK 210 3-TETRADEUTERO TSP-D4, 1 MM REMARK 210 (SER81-LYS148-U-15N,13C) REMARK 210 CALMODULIN G113R, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D CBCA(CO)NH; 3D CBCANH; 3D REMARK 210 HNCA; 3D HBHA(CO)NH; 2D-CACO; 2D- REMARK 210 (HB)CB(CGCD)HD; 2D-(HB)CB(CGCDCE) REMARK 210 HE; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D 1H- REMARK 210 15N NOESY; 3D (H)CC(CO)NH; 3D REMARK 210 H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.97, CARA 1.8.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASP A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 GLN A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 GLU A 11 REMARK 465 PHE A 12 REMARK 465 LYS A 13 REMARK 465 GLU A 14 REMARK 465 ALA A 15 REMARK 465 PHE A 16 REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 PHE A 19 REMARK 465 ASP A 20 REMARK 465 LYS A 21 REMARK 465 ASP A 22 REMARK 465 GLY A 23 REMARK 465 ASP A 24 REMARK 465 GLY A 25 REMARK 465 THR A 26 REMARK 465 ILE A 27 REMARK 465 THR A 28 REMARK 465 THR A 29 REMARK 465 LYS A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 GLY A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 MET A 36 REMARK 465 ARG A 37 REMARK 465 SER A 38 REMARK 465 LEU A 39 REMARK 465 GLY A 40 REMARK 465 GLN A 41 REMARK 465 ASN A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 GLU A 47 REMARK 465 LEU A 48 REMARK 465 GLN A 49 REMARK 465 ASP A 50 REMARK 465 MET A 51 REMARK 465 ILE A 52 REMARK 465 ASN A 53 REMARK 465 GLU A 54 REMARK 465 VAL A 55 REMARK 465 ASP A 56 REMARK 465 ALA A 57 REMARK 465 ASP A 58 REMARK 465 GLY A 59 REMARK 465 ASN A 60 REMARK 465 GLY A 61 REMARK 465 THR A 62 REMARK 465 ILE A 63 REMARK 465 ASP A 64 REMARK 465 PHE A 65 REMARK 465 PRO A 66 REMARK 465 GLU A 67 REMARK 465 PHE A 68 REMARK 465 LEU A 69 REMARK 465 THR A 70 REMARK 465 MET A 71 REMARK 465 MET A 72 REMARK 465 ALA A 73 REMARK 465 ARG A 74 REMARK 465 LYS A 75 REMARK 465 MET A 76 REMARK 465 LYS A 77 REMARK 465 ASP A 78 REMARK 465 THR A 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 6 ASP A 129 85.53 -69.67 REMARK 500 7 ASN A 137 -169.42 -104.21 REMARK 500 13 ASN A 137 -168.41 -103.30 REMARK 500 19 LYS A 115 18.90 58.10 REMARK 500 19 ASN A 137 -168.98 -100.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 95 OD1 116.0 REMARK 620 3 ASN A 97 OD1 81.4 96.1 REMARK 620 4 TYR A 99 O 83.8 157.8 76.4 REMARK 620 5 GLU A 104 OE1 114.8 92.6 155.7 87.1 REMARK 620 6 GLU A 104 OE2 73.9 82.9 151.7 113.7 51.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 129 OD2 44.2 REMARK 620 3 ASP A 131 OD1 81.6 124.2 REMARK 620 4 ASP A 131 OD2 87.2 104.0 51.6 REMARK 620 5 ASP A 133 OD2 101.1 66.8 127.0 75.5 REMARK 620 6 GLN A 135 O 95.7 65.3 149.8 158.5 83.1 REMARK 620 7 GLU A 140 OE1 107.8 121.6 80.7 127.9 142.9 71.5 REMARK 620 8 GLU A 140 OE2 67.5 76.2 97.3 143.5 133.1 54.9 46.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34764 RELATED DB: BMRB REMARK 900 CALCIUM-BOUND CALMODULIN VARIANT G113R DBREF 8BD2 A 1 148 UNP P0DP25 CALM3_HUMAN 2 149 SEQADV 8BD2 ARG A 113 UNP P0DP25 GLY 114 ENGINEERED MUTATION SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU ARG GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS HET CA A 201 1 HET CA A 202 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 AA1 GLU A 83 ASP A 93 1 11 HELIX 2 AA2 SER A 101 ARG A 113 1 13 HELIX 3 AA3 THR A 117 ASP A 129 1 13 HELIX 4 AA4 ASN A 137 MET A 145 1 9 LINK OD1 ASP A 93 CA CA A 201 1555 1555 2.41 LINK OD1 ASP A 95 CA CA A 201 1555 1555 2.42 LINK OD1 ASN A 97 CA CA A 201 1555 1555 2.54 LINK O TYR A 99 CA CA A 201 1555 1555 2.42 LINK OE1 GLU A 104 CA CA A 201 1555 1555 2.45 LINK OE2 GLU A 104 CA CA A 201 1555 1555 2.51 LINK OD1 ASP A 129 CA CA A 202 1555 1555 2.44 LINK OD2 ASP A 129 CA CA A 202 1555 1555 3.12 LINK OD1 ASP A 131 CA CA A 202 1555 1555 2.44 LINK OD2 ASP A 131 CA CA A 202 1555 1555 2.55 LINK OD2 ASP A 133 CA CA A 202 1555 1555 2.38 LINK O GLN A 135 CA CA A 202 1555 1555 2.58 LINK OE1 GLU A 140 CA CA A 202 1555 1555 2.80 LINK OE2 GLU A 140 CA CA A 202 1555 1555 2.67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1