HEADER TRANSLATION 20-OCT-22 8BDV TITLE RIBOSOME MATURATION FACTOR P (RIMP) FROM STAPHYLOCOCCUS AUREUS CAVEAT 8BDV ILE A 42 HAS WRONG CHIRALITY AT ATOM CA LEU A 105 HAS WRONG CAVEAT 2 8BDV CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME MATURATION FACTOR RIMP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: BOVINE RF122 / ET3-1; SOURCE 5 GENE: RIMP, SAB1127; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS RIBOSOME MATURATION, STAPHYLOCOCCUS AUREUS, RIBOSOME, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.GARAEVA,K.USACHEV REVDAT 1 08-NOV-23 8BDV 0 JRNL AUTH N.GARAEVA,K.USACHEV JRNL TITL RIBOSOME MATURATION FACTOR P (RIMP) FROM STAPHYLOCOCCUS JRNL TITL 2 AUREUS JRNL REF STRUCTURE 2023 JRNL REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126167. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 15N] RIBOSOME REMARK 210 MATURATION FACTOR P (RIMP), 90% REMARK 210 H2O/10% D2O; 0.7 MM [U-99% 13C; REMARK 210 U-99% 15N] RIBOSOME MATURATION REMARK 210 FACTOR P (RIMP), 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNHA; 3D HNHB; 3D HBHA(CO)NH; REMARK 210 3D HBHAHN; 3D 15N-1H HSQC-NOESY; REMARK 210 3D 13C-1H HSQC-NOESY; 3D HNCA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(COCA)CB; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HN(CO)CA; 2D 1H-13C HSQC; 2D REMARK 210 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 133 O ARG A 136 1.55 REMARK 500 H SER A 104 O LYS A 149 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ILE A 42 N - CA - C ANGL. DEV. = 20.7 DEGREES REMARK 500 4 LEU A 119 N - CA - CB ANGL. DEV. = 13.3 DEGREES REMARK 500 6 ILE A 42 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 10 LEU A 105 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 80 117.74 -170.80 REMARK 500 1 LYS A 88 -99.18 -122.07 REMARK 500 1 LYS A 134 -96.37 56.47 REMARK 500 2 ALA A 2 -72.97 -76.46 REMARK 500 2 SER A 80 108.90 -172.18 REMARK 500 2 LYS A 88 -92.59 -123.63 REMARK 500 2 LYS A 134 -96.55 56.76 REMARK 500 3 SER A 80 109.04 -165.43 REMARK 500 3 LYS A 88 -96.61 -122.76 REMARK 500 3 LYS A 134 -96.20 56.19 REMARK 500 4 SER A 80 105.73 -164.36 REMARK 500 4 LYS A 88 -94.11 -121.75 REMARK 500 4 LYS A 134 -96.76 56.48 REMARK 500 5 ALA A 2 -42.71 -136.90 REMARK 500 5 SER A 80 108.63 -170.62 REMARK 500 5 LYS A 88 -90.33 -128.42 REMARK 500 5 LYS A 134 -96.27 55.66 REMARK 500 6 SER A 80 106.33 -171.99 REMARK 500 6 LYS A 88 -91.93 -127.90 REMARK 500 6 LYS A 134 -96.08 56.46 REMARK 500 7 SER A 80 127.94 -171.32 REMARK 500 7 LYS A 88 -96.30 -121.66 REMARK 500 7 LYS A 134 -96.52 56.67 REMARK 500 8 SER A 80 108.13 -166.65 REMARK 500 8 LYS A 88 -92.94 -120.03 REMARK 500 8 LYS A 134 -96.06 55.57 REMARK 500 9 SER A 80 107.74 -167.04 REMARK 500 9 LYS A 88 -95.26 -120.51 REMARK 500 9 LYS A 134 -96.22 56.73 REMARK 500 10 SER A 80 117.05 -174.73 REMARK 500 10 LYS A 88 -92.24 -127.30 REMARK 500 10 LYS A 134 -96.51 56.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51521 RELATED DB: BMRB DBREF 8BDV A 3 156 UNP Q2YXK3 RIMP_STAAB 2 155 SEQADV 8BDV MET A 1 UNP Q2YXK3 INITIATING METHIONINE SEQADV 8BDV ALA A 2 UNP Q2YXK3 EXPRESSION TAG SEQRES 1 A 156 MET ALA SER LYS ILE THR GLU GLN VAL GLU VAL ILE VAL SEQRES 2 A 156 LYS PRO ILE MET GLU ASP LEU ASN PHE GLU LEU VAL ASP SEQRES 3 A 156 VAL GLU TYR VAL LYS GLU GLY ARG ASP HIS PHE LEU ARG SEQRES 4 A 156 ILE SER ILE ASP LYS GLU GLY GLY VAL ASP LEU ASN ASP SEQRES 5 A 156 CYS THR LEU ALA SER GLU LYS ILE SER GLU ALA MET ASP SEQRES 6 A 156 ALA ASN ASP PRO ILE PRO GLU MET TYR TYR LEU ASP VAL SEQRES 7 A 156 ALA SER PRO GLY ALA GLU ARG PRO ILE LYS LYS GLU GLN SEQRES 8 A 156 ASP PHE GLN ASN ALA ILE THR LYS PRO VAL PHE VAL SER SEQRES 9 A 156 LEU TYR VAL PRO ILE GLU GLY GLU LYS GLU TRP LEU GLY SEQRES 10 A 156 ILE LEU GLN GLU VAL ASN ASN GLU THR ILE VAL VAL GLN SEQRES 11 A 156 VAL LYS ILE LYS ALA ARG THR LYS ASP ILE GLU ILE PRO SEQRES 12 A 156 ARG ASP LYS ILE ALA LYS ALA ARG HIS ALA VAL MET ILE HELIX 1 AA1 SER A 3 LEU A 20 1 18 HELIX 2 AA2 ASP A 49 ASN A 67 1 19 HELIX 3 AA3 LYS A 89 THR A 98 1 10 SHEET 1 AA1 3 GLU A 23 GLU A 32 0 SHEET 2 AA1 3 ASP A 35 ASP A 43 -1 O ASP A 43 N GLU A 23 SHEET 3 AA1 3 TYR A 75 ALA A 79 1 O TYR A 75 N LEU A 38 SHEET 1 AA2 5 ARG A 136 PRO A 143 0 SHEET 2 AA2 5 THR A 126 ILE A 133 -1 N ILE A 133 O ARG A 136 SHEET 3 AA2 5 TRP A 115 VAL A 122 -1 N ILE A 118 O GLN A 130 SHEET 4 AA2 5 PRO A 100 LEU A 105 -1 N VAL A 101 O GLY A 117 SHEET 5 AA2 5 ILE A 147 HIS A 152 -1 O LYS A 149 N SER A 104 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1