data_8BFB # _entry.id 8BFB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8BFB pdb_00008bfb 10.2210/pdb8bfb/pdb WWPDB D_1292125276 ? ? EMDB EMD-16019 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Sarkosyl-extracted AppNL-G-F Abeta42 fibril structure (Methoxy-X04-labelled mice)' _pdbx_database_related.db_id EMD-16019 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8BFB _pdbx_database_status.recvd_initial_deposition_date 2022-10-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wilkinson, M.' 1 0000-0001-5490-613X 'Leistner, C.' 2 ? 'Burgess, A.' 3 ? 'Goodfellow, S.' 4 ? 'Deuchars, S.' 5 ? 'Ranson, N.A.' 6 0000-0002-3640-5275 'Radford, S.E.' 7 0000-0002-3079-8039 'Frank, R.A.W.' 8 0000-0001-9724-9547 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 2833 _citation.page_last 2833 _citation.title 'The in-tissue molecular architecture of beta-amyloid pathology in the mammalian brain.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-38495-5 _citation.pdbx_database_id_PubMed 37198197 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leistner, C.' 1 ? primary 'Wilkinson, M.' 2 0000-0001-5490-613X primary 'Burgess, A.' 3 0000-0002-9643-3163 primary 'Lovatt, M.' 4 0000-0002-7171-0494 primary 'Goodbody, S.' 5 ? primary 'Xu, Y.' 6 0000-0002-8389-4120 primary 'Deuchars, S.' 7 ? primary 'Radford, S.E.' 8 0000-0002-3079-8039 primary 'Ranson, N.A.' 9 0000-0002-3640-5275 primary 'Frank, R.A.W.' 10 0000-0001-9724-9547 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8BFB _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8BFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Amyloid-beta precursor protein' _entity.formula_weight 4448.025 _entity.pdbx_number_of_molecules 10 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Humanised Abeta42 from App^NL-G-F mice with arctic mutation (E22G)' # _entity_name_com.entity_id 1 _entity_name_com.name ;APP,ABPP,APPI,Alzheimer disease amyloid A4 protein homolog,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta (A4) precursor protein,Amyloid-beta A4 protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAGDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_seq_one_letter_code_can DAEFRHDSGYEVHHQKLVFFAGDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 ASP n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLY n 1 23 ASP n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n 1 41 ILE n 1 42 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 42 _entity_src_nat.common_name 'house mouse' _entity_src_nat.pdbx_organism_scientific 'Mus musculus' _entity_src_nat.pdbx_ncbi_taxonomy_id 10090 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue Brain _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _struct_ref.pdbx_align_begin 672 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8BFB A 1 ? 42 ? P05067 672 ? 713 ? 1 42 2 1 8BFB B 1 ? 42 ? P05067 672 ? 713 ? 1 42 3 1 8BFB C 1 ? 42 ? P05067 672 ? 713 ? 1 42 4 1 8BFB D 1 ? 42 ? P05067 672 ? 713 ? 1 42 5 1 8BFB E 1 ? 42 ? P05067 672 ? 713 ? 1 42 6 1 8BFB F 1 ? 42 ? P05067 672 ? 713 ? 1 42 7 1 8BFB G 1 ? 42 ? P05067 672 ? 713 ? 1 42 8 1 8BFB H 1 ? 42 ? P05067 672 ? 713 ? 1 42 9 1 8BFB I 1 ? 42 ? P05067 672 ? 713 ? 1 42 10 1 8BFB J 1 ? 42 ? P05067 672 ? 713 ? 1 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8BFB GLY A 22 ? UNP P05067 GLU 693 variant 22 1 2 8BFB GLY B 22 ? UNP P05067 GLU 693 variant 22 2 3 8BFB GLY C 22 ? UNP P05067 GLU 693 variant 22 3 4 8BFB GLY D 22 ? UNP P05067 GLU 693 variant 22 4 5 8BFB GLY E 22 ? UNP P05067 GLU 693 variant 22 5 6 8BFB GLY F 22 ? UNP P05067 GLU 693 variant 22 6 7 8BFB GLY G 22 ? UNP P05067 GLU 693 variant 22 7 8 8BFB GLY H 22 ? UNP P05067 GLU 693 variant 22 8 9 8BFB GLY I 22 ? UNP P05067 GLU 693 variant 22 9 10 8BFB GLY J 22 ? UNP P05067 GLU 693 variant 22 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8BFB _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8BFB _struct.title 'Sarkosyl-extracted AppNL-G-F Abeta42 fibril structure (Methoxy-X04-labelled mice)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8BFB _struct_keywords.text 'Amyloid, fibril, helical, cross-beta, beta amyloid, PROTEIN FIBRIL, ex vivo, arctic mutant, alzheimers disease' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 5 ? AA9 ? 5 ? AB1 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 3 ? ASP A 7 ? GLU A 3 ASP A 7 AA1 2 GLU C 3 ? ASP C 7 ? GLU C 3 ASP C 7 AA1 3 GLU E 3 ? ASP E 7 ? GLU E 3 ASP E 7 AA1 4 GLU G 3 ? ASP G 7 ? GLU G 3 ASP G 7 AA1 5 GLU I 3 ? ASP I 7 ? GLU I 3 ASP I 7 AA2 1 TYR A 10 ? LYS A 16 ? TYR A 10 LYS A 16 AA2 2 TYR C 10 ? LYS C 16 ? TYR C 10 LYS C 16 AA2 3 TYR E 10 ? LYS E 16 ? TYR E 10 LYS E 16 AA2 4 TYR G 10 ? LYS G 16 ? TYR G 10 LYS G 16 AA2 5 TYR I 10 ? LYS I 16 ? TYR I 10 LYS I 16 AA3 1 PHE A 20 ? ALA A 21 ? PHE A 20 ALA A 21 AA3 2 PHE C 20 ? ALA C 21 ? PHE C 20 ALA C 21 AA3 3 PHE E 20 ? ALA E 21 ? PHE E 20 ALA E 21 AA3 4 PHE G 20 ? ALA G 21 ? PHE G 20 ALA G 21 AA3 5 PHE I 20 ? ALA I 21 ? PHE I 20 ALA I 21 AA4 1 VAL A 24 ? ASN A 27 ? VAL A 24 ASN A 27 AA4 2 VAL C 24 ? ASN C 27 ? VAL C 24 ASN C 27 AA4 3 VAL E 24 ? ASN E 27 ? VAL E 24 ASN E 27 AA4 4 VAL G 24 ? ASN G 27 ? VAL G 24 ASN G 27 AA4 5 VAL I 24 ? ASN I 27 ? VAL I 24 ASN I 27 AA5 1 ALA A 30 ? VAL A 36 ? ALA A 30 VAL A 36 AA5 2 ALA C 30 ? VAL C 36 ? ALA C 30 VAL C 36 AA5 3 ALA E 30 ? VAL E 36 ? ALA E 30 VAL E 36 AA5 4 ALA G 30 ? VAL G 36 ? ALA G 30 VAL G 36 AA5 5 ALA I 30 ? VAL I 36 ? ALA I 30 VAL I 36 AA6 1 GLU B 3 ? ASP B 7 ? GLU B 3 ASP B 7 AA6 2 GLU D 3 ? ASP D 7 ? GLU D 3 ASP D 7 AA6 3 GLU F 3 ? ASP F 7 ? GLU F 3 ASP F 7 AA6 4 GLU H 3 ? ASP H 7 ? GLU H 3 ASP H 7 AA6 5 GLU J 3 ? ASP J 7 ? GLU J 3 ASP J 7 AA7 1 TYR B 10 ? LYS B 16 ? TYR B 10 LYS B 16 AA7 2 TYR D 10 ? LYS D 16 ? TYR D 10 LYS D 16 AA7 3 TYR F 10 ? LYS F 16 ? TYR F 10 LYS F 16 AA7 4 TYR H 10 ? LYS H 16 ? TYR H 10 LYS H 16 AA7 5 TYR J 10 ? LYS J 16 ? TYR J 10 LYS J 16 AA8 1 PHE B 20 ? ALA B 21 ? PHE B 20 ALA B 21 AA8 2 PHE D 20 ? ALA D 21 ? PHE D 20 ALA D 21 AA8 3 PHE F 20 ? ALA F 21 ? PHE F 20 ALA F 21 AA8 4 PHE H 20 ? ALA H 21 ? PHE H 20 ALA H 21 AA8 5 PHE J 20 ? ALA J 21 ? PHE J 20 ALA J 21 AA9 1 VAL B 24 ? ASN B 27 ? VAL B 24 ASN B 27 AA9 2 VAL D 24 ? ASN D 27 ? VAL D 24 ASN D 27 AA9 3 VAL F 24 ? ASN F 27 ? VAL F 24 ASN F 27 AA9 4 VAL H 24 ? ASN H 27 ? VAL H 24 ASN H 27 AA9 5 VAL J 24 ? ASN J 27 ? VAL J 24 ASN J 27 AB1 1 ALA B 30 ? VAL B 36 ? ALA B 30 VAL B 36 AB1 2 ALA D 30 ? VAL D 36 ? ALA D 30 VAL D 36 AB1 3 ALA F 30 ? VAL F 36 ? ALA F 30 VAL F 36 AB1 4 ALA H 30 ? VAL H 36 ? ALA H 30 VAL H 36 AB1 5 ALA J 30 ? VAL J 36 ? ALA J 30 VAL J 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 4 ? N PHE A 4 O GLU C 3 ? O GLU C 3 AA1 2 3 N PHE C 4 ? N PHE C 4 O GLU E 3 ? O GLU E 3 AA1 3 4 N PHE E 4 ? N PHE E 4 O GLU G 3 ? O GLU G 3 AA1 4 5 N PHE G 4 ? N PHE G 4 O GLU I 3 ? O GLU I 3 AA2 1 2 N GLU A 11 ? N GLU A 11 O TYR C 10 ? O TYR C 10 AA2 2 3 N HIS C 13 ? N HIS C 13 O HIS E 14 ? O HIS E 14 AA2 3 4 N HIS E 13 ? N HIS E 13 O HIS G 14 ? O HIS G 14 AA2 4 5 N HIS G 13 ? N HIS G 13 O HIS I 14 ? O HIS I 14 AA3 1 2 N ALA A 21 ? N ALA A 21 O PHE C 20 ? O PHE C 20 AA3 2 3 N ALA C 21 ? N ALA C 21 O PHE E 20 ? O PHE E 20 AA3 3 4 N ALA E 21 ? N ALA E 21 O PHE G 20 ? O PHE G 20 AA3 4 5 N ALA G 21 ? N ALA G 21 O PHE I 20 ? O PHE I 20 AA4 1 2 N GLY A 25 ? N GLY A 25 O VAL C 24 ? O VAL C 24 AA4 2 3 N GLY C 25 ? N GLY C 25 O VAL E 24 ? O VAL E 24 AA4 3 4 N GLY E 25 ? N GLY E 25 O VAL G 24 ? O VAL G 24 AA4 4 5 N GLY G 25 ? N GLY G 25 O VAL I 24 ? O VAL I 24 AA5 1 2 N ALA A 30 ? N ALA A 30 O ILE C 31 ? O ILE C 31 AA5 2 3 N ALA C 30 ? N ALA C 30 O ILE E 31 ? O ILE E 31 AA5 3 4 N ALA E 30 ? N ALA E 30 O ILE G 31 ? O ILE G 31 AA5 4 5 N ALA G 30 ? N ALA G 30 O ILE I 31 ? O ILE I 31 AA6 1 2 N PHE B 4 ? N PHE B 4 O GLU D 3 ? O GLU D 3 AA6 2 3 N PHE D 4 ? N PHE D 4 O GLU F 3 ? O GLU F 3 AA6 3 4 N PHE F 4 ? N PHE F 4 O GLU H 3 ? O GLU H 3 AA6 4 5 N PHE H 4 ? N PHE H 4 O GLU J 3 ? O GLU J 3 AA7 1 2 N HIS B 13 ? N HIS B 13 O HIS D 14 ? O HIS D 14 AA7 2 3 N HIS D 13 ? N HIS D 13 O HIS F 14 ? O HIS F 14 AA7 3 4 N HIS F 13 ? N HIS F 13 O HIS H 14 ? O HIS H 14 AA7 4 5 N GLU H 11 ? N GLU H 11 O TYR J 10 ? O TYR J 10 AA8 1 2 N ALA B 21 ? N ALA B 21 O PHE D 20 ? O PHE D 20 AA8 2 3 N ALA D 21 ? N ALA D 21 O PHE F 20 ? O PHE F 20 AA8 3 4 N ALA F 21 ? N ALA F 21 O PHE H 20 ? O PHE H 20 AA8 4 5 N ALA H 21 ? N ALA H 21 O PHE J 20 ? O PHE J 20 AA9 1 2 N GLY B 25 ? N GLY B 25 O VAL D 24 ? O VAL D 24 AA9 2 3 N GLY D 25 ? N GLY D 25 O VAL F 24 ? O VAL F 24 AA9 3 4 N GLY F 25 ? N GLY F 25 O VAL H 24 ? O VAL H 24 AA9 4 5 N GLY H 25 ? N GLY H 25 O VAL J 24 ? O VAL J 24 AB1 1 2 N ALA B 30 ? N ALA B 30 O ILE D 31 ? O ILE D 31 AB1 2 3 N ALA D 30 ? N ALA D 30 O ILE F 31 ? O ILE F 31 AB1 3 4 N ALA F 30 ? N ALA F 30 O ILE H 31 ? O ILE H 31 AB1 4 5 N ALA H 30 ? N ALA H 30 O ILE J 31 ? O ILE J 31 # _atom_sites.entry_id 8BFB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 VAL 39 39 ? ? ? A . n A 1 40 VAL 40 40 ? ? ? A . n A 1 41 ILE 41 41 ? ? ? A . n A 1 42 ALA 42 42 ? ? ? A . n B 1 1 ASP 1 1 1 ASP ASP B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 HIS 6 6 6 HIS HIS B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 HIS 13 13 13 HIS HIS B . n B 1 14 HIS 14 14 14 HIS HIS B . n B 1 15 GLN 15 15 15 GLN GLN B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 PHE 19 19 19 PHE PHE B . n B 1 20 PHE 20 20 20 PHE PHE B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 ASP 23 23 23 ASP ASP B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 ILE 32 32 32 ILE ILE B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 MET 35 35 35 MET MET B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 VAL 39 39 ? ? ? B . n B 1 40 VAL 40 40 ? ? ? B . n B 1 41 ILE 41 41 ? ? ? B . n B 1 42 ALA 42 42 ? ? ? B . n C 1 1 ASP 1 1 1 ASP ASP C . n C 1 2 ALA 2 2 2 ALA ALA C . n C 1 3 GLU 3 3 3 GLU GLU C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 ARG 5 5 5 ARG ARG C . n C 1 6 HIS 6 6 6 HIS HIS C . n C 1 7 ASP 7 7 7 ASP ASP C . n C 1 8 SER 8 8 8 SER SER C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 TYR 10 10 10 TYR TYR C . n C 1 11 GLU 11 11 11 GLU GLU C . n C 1 12 VAL 12 12 12 VAL VAL C . n C 1 13 HIS 13 13 13 HIS HIS C . n C 1 14 HIS 14 14 14 HIS HIS C . n C 1 15 GLN 15 15 15 GLN GLN C . n C 1 16 LYS 16 16 16 LYS LYS C . n C 1 17 LEU 17 17 17 LEU LEU C . n C 1 18 VAL 18 18 18 VAL VAL C . n C 1 19 PHE 19 19 19 PHE PHE C . n C 1 20 PHE 20 20 20 PHE PHE C . n C 1 21 ALA 21 21 21 ALA ALA C . n C 1 22 GLY 22 22 22 GLY GLY C . n C 1 23 ASP 23 23 23 ASP ASP C . n C 1 24 VAL 24 24 24 VAL VAL C . n C 1 25 GLY 25 25 25 GLY GLY C . n C 1 26 SER 26 26 26 SER SER C . n C 1 27 ASN 27 27 27 ASN ASN C . n C 1 28 LYS 28 28 28 LYS LYS C . n C 1 29 GLY 29 29 29 GLY GLY C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 ILE 31 31 31 ILE ILE C . n C 1 32 ILE 32 32 32 ILE ILE C . n C 1 33 GLY 33 33 33 GLY GLY C . n C 1 34 LEU 34 34 34 LEU LEU C . n C 1 35 MET 35 35 35 MET MET C . n C 1 36 VAL 36 36 36 VAL VAL C . n C 1 37 GLY 37 37 37 GLY GLY C . n C 1 38 GLY 38 38 38 GLY GLY C . n C 1 39 VAL 39 39 ? ? ? C . n C 1 40 VAL 40 40 ? ? ? C . n C 1 41 ILE 41 41 ? ? ? C . n C 1 42 ALA 42 42 ? ? ? C . n D 1 1 ASP 1 1 1 ASP ASP D . n D 1 2 ALA 2 2 2 ALA ALA D . n D 1 3 GLU 3 3 3 GLU GLU D . n D 1 4 PHE 4 4 4 PHE PHE D . n D 1 5 ARG 5 5 5 ARG ARG D . n D 1 6 HIS 6 6 6 HIS HIS D . n D 1 7 ASP 7 7 7 ASP ASP D . n D 1 8 SER 8 8 8 SER SER D . n D 1 9 GLY 9 9 9 GLY GLY D . n D 1 10 TYR 10 10 10 TYR TYR D . n D 1 11 GLU 11 11 11 GLU GLU D . n D 1 12 VAL 12 12 12 VAL VAL D . n D 1 13 HIS 13 13 13 HIS HIS D . n D 1 14 HIS 14 14 14 HIS HIS D . n D 1 15 GLN 15 15 15 GLN GLN D . n D 1 16 LYS 16 16 16 LYS LYS D . n D 1 17 LEU 17 17 17 LEU LEU D . n D 1 18 VAL 18 18 18 VAL VAL D . n D 1 19 PHE 19 19 19 PHE PHE D . n D 1 20 PHE 20 20 20 PHE PHE D . n D 1 21 ALA 21 21 21 ALA ALA D . n D 1 22 GLY 22 22 22 GLY GLY D . n D 1 23 ASP 23 23 23 ASP ASP D . n D 1 24 VAL 24 24 24 VAL VAL D . n D 1 25 GLY 25 25 25 GLY GLY D . n D 1 26 SER 26 26 26 SER SER D . n D 1 27 ASN 27 27 27 ASN ASN D . n D 1 28 LYS 28 28 28 LYS LYS D . n D 1 29 GLY 29 29 29 GLY GLY D . n D 1 30 ALA 30 30 30 ALA ALA D . n D 1 31 ILE 31 31 31 ILE ILE D . n D 1 32 ILE 32 32 32 ILE ILE D . n D 1 33 GLY 33 33 33 GLY GLY D . n D 1 34 LEU 34 34 34 LEU LEU D . n D 1 35 MET 35 35 35 MET MET D . n D 1 36 VAL 36 36 36 VAL VAL D . n D 1 37 GLY 37 37 37 GLY GLY D . n D 1 38 GLY 38 38 38 GLY GLY D . n D 1 39 VAL 39 39 ? ? ? D . n D 1 40 VAL 40 40 ? ? ? D . n D 1 41 ILE 41 41 ? ? ? D . n D 1 42 ALA 42 42 ? ? ? D . n E 1 1 ASP 1 1 1 ASP ASP E . n E 1 2 ALA 2 2 2 ALA ALA E . n E 1 3 GLU 3 3 3 GLU GLU E . n E 1 4 PHE 4 4 4 PHE PHE E . n E 1 5 ARG 5 5 5 ARG ARG E . n E 1 6 HIS 6 6 6 HIS HIS E . n E 1 7 ASP 7 7 7 ASP ASP E . n E 1 8 SER 8 8 8 SER SER E . n E 1 9 GLY 9 9 9 GLY GLY E . n E 1 10 TYR 10 10 10 TYR TYR E . n E 1 11 GLU 11 11 11 GLU GLU E . n E 1 12 VAL 12 12 12 VAL VAL E . n E 1 13 HIS 13 13 13 HIS HIS E . n E 1 14 HIS 14 14 14 HIS HIS E . n E 1 15 GLN 15 15 15 GLN GLN E . n E 1 16 LYS 16 16 16 LYS LYS E . n E 1 17 LEU 17 17 17 LEU LEU E . n E 1 18 VAL 18 18 18 VAL VAL E . n E 1 19 PHE 19 19 19 PHE PHE E . n E 1 20 PHE 20 20 20 PHE PHE E . n E 1 21 ALA 21 21 21 ALA ALA E . n E 1 22 GLY 22 22 22 GLY GLY E . n E 1 23 ASP 23 23 23 ASP ASP E . n E 1 24 VAL 24 24 24 VAL VAL E . n E 1 25 GLY 25 25 25 GLY GLY E . n E 1 26 SER 26 26 26 SER SER E . n E 1 27 ASN 27 27 27 ASN ASN E . n E 1 28 LYS 28 28 28 LYS LYS E . n E 1 29 GLY 29 29 29 GLY GLY E . n E 1 30 ALA 30 30 30 ALA ALA E . n E 1 31 ILE 31 31 31 ILE ILE E . n E 1 32 ILE 32 32 32 ILE ILE E . n E 1 33 GLY 33 33 33 GLY GLY E . n E 1 34 LEU 34 34 34 LEU LEU E . n E 1 35 MET 35 35 35 MET MET E . n E 1 36 VAL 36 36 36 VAL VAL E . n E 1 37 GLY 37 37 37 GLY GLY E . n E 1 38 GLY 38 38 38 GLY GLY E . n E 1 39 VAL 39 39 ? ? ? E . n E 1 40 VAL 40 40 ? ? ? E . n E 1 41 ILE 41 41 ? ? ? E . n E 1 42 ALA 42 42 ? ? ? E . n F 1 1 ASP 1 1 1 ASP ASP F . n F 1 2 ALA 2 2 2 ALA ALA F . n F 1 3 GLU 3 3 3 GLU GLU F . n F 1 4 PHE 4 4 4 PHE PHE F . n F 1 5 ARG 5 5 5 ARG ARG F . n F 1 6 HIS 6 6 6 HIS HIS F . n F 1 7 ASP 7 7 7 ASP ASP F . n F 1 8 SER 8 8 8 SER SER F . n F 1 9 GLY 9 9 9 GLY GLY F . n F 1 10 TYR 10 10 10 TYR TYR F . n F 1 11 GLU 11 11 11 GLU GLU F . n F 1 12 VAL 12 12 12 VAL VAL F . n F 1 13 HIS 13 13 13 HIS HIS F . n F 1 14 HIS 14 14 14 HIS HIS F . n F 1 15 GLN 15 15 15 GLN GLN F . n F 1 16 LYS 16 16 16 LYS LYS F . n F 1 17 LEU 17 17 17 LEU LEU F . n F 1 18 VAL 18 18 18 VAL VAL F . n F 1 19 PHE 19 19 19 PHE PHE F . n F 1 20 PHE 20 20 20 PHE PHE F . n F 1 21 ALA 21 21 21 ALA ALA F . n F 1 22 GLY 22 22 22 GLY GLY F . n F 1 23 ASP 23 23 23 ASP ASP F . n F 1 24 VAL 24 24 24 VAL VAL F . n F 1 25 GLY 25 25 25 GLY GLY F . n F 1 26 SER 26 26 26 SER SER F . n F 1 27 ASN 27 27 27 ASN ASN F . n F 1 28 LYS 28 28 28 LYS LYS F . n F 1 29 GLY 29 29 29 GLY GLY F . n F 1 30 ALA 30 30 30 ALA ALA F . n F 1 31 ILE 31 31 31 ILE ILE F . n F 1 32 ILE 32 32 32 ILE ILE F . n F 1 33 GLY 33 33 33 GLY GLY F . n F 1 34 LEU 34 34 34 LEU LEU F . n F 1 35 MET 35 35 35 MET MET F . n F 1 36 VAL 36 36 36 VAL VAL F . n F 1 37 GLY 37 37 37 GLY GLY F . n F 1 38 GLY 38 38 38 GLY GLY F . n F 1 39 VAL 39 39 ? ? ? F . n F 1 40 VAL 40 40 ? ? ? F . n F 1 41 ILE 41 41 ? ? ? F . n F 1 42 ALA 42 42 ? ? ? F . n G 1 1 ASP 1 1 1 ASP ASP G . n G 1 2 ALA 2 2 2 ALA ALA G . n G 1 3 GLU 3 3 3 GLU GLU G . n G 1 4 PHE 4 4 4 PHE PHE G . n G 1 5 ARG 5 5 5 ARG ARG G . n G 1 6 HIS 6 6 6 HIS HIS G . n G 1 7 ASP 7 7 7 ASP ASP G . n G 1 8 SER 8 8 8 SER SER G . n G 1 9 GLY 9 9 9 GLY GLY G . n G 1 10 TYR 10 10 10 TYR TYR G . n G 1 11 GLU 11 11 11 GLU GLU G . n G 1 12 VAL 12 12 12 VAL VAL G . n G 1 13 HIS 13 13 13 HIS HIS G . n G 1 14 HIS 14 14 14 HIS HIS G . n G 1 15 GLN 15 15 15 GLN GLN G . n G 1 16 LYS 16 16 16 LYS LYS G . n G 1 17 LEU 17 17 17 LEU LEU G . n G 1 18 VAL 18 18 18 VAL VAL G . n G 1 19 PHE 19 19 19 PHE PHE G . n G 1 20 PHE 20 20 20 PHE PHE G . n G 1 21 ALA 21 21 21 ALA ALA G . n G 1 22 GLY 22 22 22 GLY GLY G . n G 1 23 ASP 23 23 23 ASP ASP G . n G 1 24 VAL 24 24 24 VAL VAL G . n G 1 25 GLY 25 25 25 GLY GLY G . n G 1 26 SER 26 26 26 SER SER G . n G 1 27 ASN 27 27 27 ASN ASN G . n G 1 28 LYS 28 28 28 LYS LYS G . n G 1 29 GLY 29 29 29 GLY GLY G . n G 1 30 ALA 30 30 30 ALA ALA G . n G 1 31 ILE 31 31 31 ILE ILE G . n G 1 32 ILE 32 32 32 ILE ILE G . n G 1 33 GLY 33 33 33 GLY GLY G . n G 1 34 LEU 34 34 34 LEU LEU G . n G 1 35 MET 35 35 35 MET MET G . n G 1 36 VAL 36 36 36 VAL VAL G . n G 1 37 GLY 37 37 37 GLY GLY G . n G 1 38 GLY 38 38 38 GLY GLY G . n G 1 39 VAL 39 39 ? ? ? G . n G 1 40 VAL 40 40 ? ? ? G . n G 1 41 ILE 41 41 ? ? ? G . n G 1 42 ALA 42 42 ? ? ? G . n H 1 1 ASP 1 1 1 ASP ASP H . n H 1 2 ALA 2 2 2 ALA ALA H . n H 1 3 GLU 3 3 3 GLU GLU H . n H 1 4 PHE 4 4 4 PHE PHE H . n H 1 5 ARG 5 5 5 ARG ARG H . n H 1 6 HIS 6 6 6 HIS HIS H . n H 1 7 ASP 7 7 7 ASP ASP H . n H 1 8 SER 8 8 8 SER SER H . n H 1 9 GLY 9 9 9 GLY GLY H . n H 1 10 TYR 10 10 10 TYR TYR H . n H 1 11 GLU 11 11 11 GLU GLU H . n H 1 12 VAL 12 12 12 VAL VAL H . n H 1 13 HIS 13 13 13 HIS HIS H . n H 1 14 HIS 14 14 14 HIS HIS H . n H 1 15 GLN 15 15 15 GLN GLN H . n H 1 16 LYS 16 16 16 LYS LYS H . n H 1 17 LEU 17 17 17 LEU LEU H . n H 1 18 VAL 18 18 18 VAL VAL H . n H 1 19 PHE 19 19 19 PHE PHE H . n H 1 20 PHE 20 20 20 PHE PHE H . n H 1 21 ALA 21 21 21 ALA ALA H . n H 1 22 GLY 22 22 22 GLY GLY H . n H 1 23 ASP 23 23 23 ASP ASP H . n H 1 24 VAL 24 24 24 VAL VAL H . n H 1 25 GLY 25 25 25 GLY GLY H . n H 1 26 SER 26 26 26 SER SER H . n H 1 27 ASN 27 27 27 ASN ASN H . n H 1 28 LYS 28 28 28 LYS LYS H . n H 1 29 GLY 29 29 29 GLY GLY H . n H 1 30 ALA 30 30 30 ALA ALA H . n H 1 31 ILE 31 31 31 ILE ILE H . n H 1 32 ILE 32 32 32 ILE ILE H . n H 1 33 GLY 33 33 33 GLY GLY H . n H 1 34 LEU 34 34 34 LEU LEU H . n H 1 35 MET 35 35 35 MET MET H . n H 1 36 VAL 36 36 36 VAL VAL H . n H 1 37 GLY 37 37 37 GLY GLY H . n H 1 38 GLY 38 38 38 GLY GLY H . n H 1 39 VAL 39 39 ? ? ? H . n H 1 40 VAL 40 40 ? ? ? H . n H 1 41 ILE 41 41 ? ? ? H . n H 1 42 ALA 42 42 ? ? ? H . n I 1 1 ASP 1 1 1 ASP ASP I . n I 1 2 ALA 2 2 2 ALA ALA I . n I 1 3 GLU 3 3 3 GLU GLU I . n I 1 4 PHE 4 4 4 PHE PHE I . n I 1 5 ARG 5 5 5 ARG ARG I . n I 1 6 HIS 6 6 6 HIS HIS I . n I 1 7 ASP 7 7 7 ASP ASP I . n I 1 8 SER 8 8 8 SER SER I . n I 1 9 GLY 9 9 9 GLY GLY I . n I 1 10 TYR 10 10 10 TYR TYR I . n I 1 11 GLU 11 11 11 GLU GLU I . n I 1 12 VAL 12 12 12 VAL VAL I . n I 1 13 HIS 13 13 13 HIS HIS I . n I 1 14 HIS 14 14 14 HIS HIS I . n I 1 15 GLN 15 15 15 GLN GLN I . n I 1 16 LYS 16 16 16 LYS LYS I . n I 1 17 LEU 17 17 17 LEU LEU I . n I 1 18 VAL 18 18 18 VAL VAL I . n I 1 19 PHE 19 19 19 PHE PHE I . n I 1 20 PHE 20 20 20 PHE PHE I . n I 1 21 ALA 21 21 21 ALA ALA I . n I 1 22 GLY 22 22 22 GLY GLY I . n I 1 23 ASP 23 23 23 ASP ASP I . n I 1 24 VAL 24 24 24 VAL VAL I . n I 1 25 GLY 25 25 25 GLY GLY I . n I 1 26 SER 26 26 26 SER SER I . n I 1 27 ASN 27 27 27 ASN ASN I . n I 1 28 LYS 28 28 28 LYS LYS I . n I 1 29 GLY 29 29 29 GLY GLY I . n I 1 30 ALA 30 30 30 ALA ALA I . n I 1 31 ILE 31 31 31 ILE ILE I . n I 1 32 ILE 32 32 32 ILE ILE I . n I 1 33 GLY 33 33 33 GLY GLY I . n I 1 34 LEU 34 34 34 LEU LEU I . n I 1 35 MET 35 35 35 MET MET I . n I 1 36 VAL 36 36 36 VAL VAL I . n I 1 37 GLY 37 37 37 GLY GLY I . n I 1 38 GLY 38 38 38 GLY GLY I . n I 1 39 VAL 39 39 ? ? ? I . n I 1 40 VAL 40 40 ? ? ? I . n I 1 41 ILE 41 41 ? ? ? I . n I 1 42 ALA 42 42 ? ? ? I . n J 1 1 ASP 1 1 1 ASP ASP J . n J 1 2 ALA 2 2 2 ALA ALA J . n J 1 3 GLU 3 3 3 GLU GLU J . n J 1 4 PHE 4 4 4 PHE PHE J . n J 1 5 ARG 5 5 5 ARG ARG J . n J 1 6 HIS 6 6 6 HIS HIS J . n J 1 7 ASP 7 7 7 ASP ASP J . n J 1 8 SER 8 8 8 SER SER J . n J 1 9 GLY 9 9 9 GLY GLY J . n J 1 10 TYR 10 10 10 TYR TYR J . n J 1 11 GLU 11 11 11 GLU GLU J . n J 1 12 VAL 12 12 12 VAL VAL J . n J 1 13 HIS 13 13 13 HIS HIS J . n J 1 14 HIS 14 14 14 HIS HIS J . n J 1 15 GLN 15 15 15 GLN GLN J . n J 1 16 LYS 16 16 16 LYS LYS J . n J 1 17 LEU 17 17 17 LEU LEU J . n J 1 18 VAL 18 18 18 VAL VAL J . n J 1 19 PHE 19 19 19 PHE PHE J . n J 1 20 PHE 20 20 20 PHE PHE J . n J 1 21 ALA 21 21 21 ALA ALA J . n J 1 22 GLY 22 22 22 GLY GLY J . n J 1 23 ASP 23 23 23 ASP ASP J . n J 1 24 VAL 24 24 24 VAL VAL J . n J 1 25 GLY 25 25 25 GLY GLY J . n J 1 26 SER 26 26 26 SER SER J . n J 1 27 ASN 27 27 27 ASN ASN J . n J 1 28 LYS 28 28 28 LYS LYS J . n J 1 29 GLY 29 29 29 GLY GLY J . n J 1 30 ALA 30 30 30 ALA ALA J . n J 1 31 ILE 31 31 31 ILE ILE J . n J 1 32 ILE 32 32 32 ILE ILE J . n J 1 33 GLY 33 33 33 GLY GLY J . n J 1 34 LEU 34 34 34 LEU LEU J . n J 1 35 MET 35 35 35 MET MET J . n J 1 36 VAL 36 36 36 VAL VAL J . n J 1 37 GLY 37 37 37 GLY GLY J . n J 1 38 GLY 38 38 38 GLY GLY J . n J 1 39 VAL 39 39 ? ? ? J . n J 1 40 VAL 40 40 ? ? ? J . n J 1 41 ILE 41 41 ? ? ? J . n J 1 42 ALA 42 42 ? ? ? J . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 N.A.Ranson@leeds.ac.uk Neil Ranson A 'principal investigator/group leader' 0000-0002-3640-5275 3 r.frank@leeds.ac.uk Rene Frank A.W. 'principal investigator/group leader' 0000-0001-9724-9547 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 31920 ? 1 MORE -117 ? 1 'SSA (A^2)' 14550 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-05-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8BFB _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Correlation coefficient' _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 52 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 8BFB _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 3640 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Sarkosyl-extracted AppNL-G-F Abeta42 fibril' _em_entity_assembly.details 'Fibrils purified from mouse brain labelled with Methoxy-X04' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8BFB _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1400 _em_imaging.nominal_defocus_max 2900 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8BFB _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details '6s blot' # _em_experiment.entry_id 8BFB _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 39 ? A VAL 39 2 1 Y 1 A VAL 40 ? A VAL 40 3 1 Y 1 A ILE 41 ? A ILE 41 4 1 Y 1 A ALA 42 ? A ALA 42 5 1 Y 1 B VAL 39 ? B VAL 39 6 1 Y 1 B VAL 40 ? B VAL 40 7 1 Y 1 B ILE 41 ? B ILE 41 8 1 Y 1 B ALA 42 ? B ALA 42 9 1 Y 1 C VAL 39 ? C VAL 39 10 1 Y 1 C VAL 40 ? C VAL 40 11 1 Y 1 C ILE 41 ? C ILE 41 12 1 Y 1 C ALA 42 ? C ALA 42 13 1 Y 1 D VAL 39 ? D VAL 39 14 1 Y 1 D VAL 40 ? D VAL 40 15 1 Y 1 D ILE 41 ? D ILE 41 16 1 Y 1 D ALA 42 ? D ALA 42 17 1 Y 1 E VAL 39 ? E VAL 39 18 1 Y 1 E VAL 40 ? E VAL 40 19 1 Y 1 E ILE 41 ? E ILE 41 20 1 Y 1 E ALA 42 ? E ALA 42 21 1 Y 1 F VAL 39 ? F VAL 39 22 1 Y 1 F VAL 40 ? F VAL 40 23 1 Y 1 F ILE 41 ? F ILE 41 24 1 Y 1 F ALA 42 ? F ALA 42 25 1 Y 1 G VAL 39 ? G VAL 39 26 1 Y 1 G VAL 40 ? G VAL 40 27 1 Y 1 G ILE 41 ? G ILE 41 28 1 Y 1 G ALA 42 ? G ALA 42 29 1 Y 1 H VAL 39 ? H VAL 39 30 1 Y 1 H VAL 40 ? H VAL 40 31 1 Y 1 H ILE 41 ? H ILE 41 32 1 Y 1 H ALA 42 ? H ALA 42 33 1 Y 1 I VAL 39 ? I VAL 39 34 1 Y 1 I VAL 40 ? I VAL 40 35 1 Y 1 I ILE 41 ? I ILE 41 36 1 Y 1 I ALA 42 ? I ALA 42 37 1 Y 1 J VAL 39 ? J VAL 39 38 1 Y 1 J VAL 40 ? J VAL 40 39 1 Y 1 J ILE 41 ? J ILE 41 40 1 Y 1 J ALA 42 ? J ALA 42 # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 50 mM NaCl 1 'sodium chloride' 1 20 mM ? 2 Tris-HCl # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 4.441 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 10090 _em_entity_assembly_naturalsource.organism 'Mus musculus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain AppNLGF _em_entity_assembly_naturalsource.tissue Brain # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.355 _em_helical_entity.axial_rise_per_subunit 2.414 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 6 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 41 _em_image_recording.details '1442 raw EER frames were collected per image and combined into 40 fractions for processing' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4165 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'TFS Selectris' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details 'Manually picked a subset of images to train a model for automatic fibril segment picking in crYOLO' _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 136214 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? crYOLO ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 4.0 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4.0 CLASSIFICATION ? 11 1 ? ? RELION 4.0 RECONSTRUCTION ? 12 1 ? ? RELION 4.0 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.17 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details 'Sarkosyl-insoluble fibrils from App^NL-G-F mouse brain labelled with Methoxy-X04' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Wellcome Trust' 'United Kingdom' ? 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' ? 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #