HEADER TRANSFERASE 26-OCT-22 8BFM TITLE CRYSTAL STRUCTURE OF HUMAN CALMODULIN-DEPENDENT PROTEIN KINASE 1D TITLE 2 (CAMK1D) IN COMPLEX WITH FZ331 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE 1D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM KINASE I DELTA,CAM KINASE ID,CAM-KI DELTA,CAMKI DELTA, COMPND 5 CAMKID,CAMKI-LIKE PROTEIN KINASE,CKLIK; COMPND 6 EC: 2.7.11.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CAMK1D, CAMKID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAMK1D, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KRAEMER,W.F.ZHU,V.HERNANDEZ-OLMOS,E.PROSCHAK,S.KNAPP,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 07-FEB-24 8BFM 1 REMARK REVDAT 2 24-MAY-23 8BFM 1 FORMUL REVDAT 1 23-NOV-22 8BFM 0 JRNL AUTH A.KRAEMER,A.DOELLE,S.KNAPP, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL STRUCTURE OF HUMAN WDR5 AND PVHL:ELONGINC:ELONGINB BOUND TO JRNL TITL 2 PROTAC WITH PEG LINKER (CONFORMATION #2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 27070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1989 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 2.25000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2144 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1898 ; 0.007 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2914 ; 1.318 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4382 ; 0.437 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 6.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 8 ; 7.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;14.203 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2583 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 441 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1217 -21.8305 -7.1312 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.1263 REMARK 3 T33: 0.0188 T12: -0.0598 REMARK 3 T13: 0.0382 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 1.3217 L22: 0.8501 REMARK 3 L33: 3.7453 L12: 0.1640 REMARK 3 L13: 0.6401 L23: 1.2769 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: -0.2685 S13: 0.0682 REMARK 3 S21: 0.2402 S22: -0.1856 S23: 0.1129 REMARK 3 S31: 0.2479 S32: -0.5143 S33: 0.1360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8BFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1292126275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28529 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6T29 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,1M NACIT, PH 5.9 2,05M AMMSO4 0,1M REMARK 280 NA/K TARTRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 15.39155 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.62157 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 15.39155 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 52.62157 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 LEU A 168 REMARK 465 SER A 169 REMARK 465 LYS A 170 REMARK 465 MET A 171 REMARK 465 GLU A 172 REMARK 465 GLY A 173 REMARK 465 LYS A 174 REMARK 465 GLY A 175 REMARK 465 ASP A 176 REMARK 465 VAL A 177 REMARK 465 MET A 178 REMARK 465 SER A 179 REMARK 465 THR A 180 REMARK 465 ALA A 181 REMARK 465 CYS A 182 REMARK 465 GLY A 183 REMARK 465 THR A 184 REMARK 465 PRO A 185 REMARK 465 ALA A 194 REMARK 465 GLN A 195 REMARK 465 LYS A 196 REMARK 465 PRO A 197 REMARK 465 ASP A 223 REMARK 465 GLU A 224 REMARK 465 ASN A 225 REMARK 465 ALA A 302 REMARK 465 LYS A 303 REMARK 465 SER A 304 REMARK 465 LYS A 305 REMARK 465 TRP A 306 REMARK 465 ARG A 307 REMARK 465 GLN A 308 REMARK 465 ALA A 309 REMARK 465 PHE A 310 REMARK 465 ASN A 311 REMARK 465 ALA A 312 REMARK 465 THR A 313 REMARK 465 ALA A 314 REMARK 465 VAL A 315 REMARK 465 VAL A 316 REMARK 465 ARG A 317 REMARK 465 HIS A 318 REMARK 465 MET A 319 REMARK 465 ARG A 320 REMARK 465 LYS A 321 REMARK 465 LEU A 322 REMARK 465 HIS A 323 REMARK 465 LEU A 324 REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 LEU A 328 REMARK 465 ASP A 329 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 ASN A 332 REMARK 465 ALA A 333 REMARK 465 SER A 334 REMARK 465 VAL A 335 REMARK 465 SER A 336 REMARK 465 SER A 337 REMARK 465 SER A 338 REMARK 465 LEU A 339 REMARK 465 SER A 340 REMARK 465 LEU A 341 REMARK 465 ALA A 342 REMARK 465 SER A 343 REMARK 465 GLN A 344 REMARK 465 LYS A 345 REMARK 465 ASP A 346 REMARK 465 CYS A 347 REMARK 465 LEU A 348 REMARK 465 ALA A 349 REMARK 465 PRO A 350 REMARK 465 SER A 351 REMARK 465 THR A 352 REMARK 465 LEU A 353 REMARK 465 CYS A 354 REMARK 465 SER A 355 REMARK 465 PHE A 356 REMARK 465 ILE A 357 REMARK 465 SER A 358 REMARK 465 SER A 359 REMARK 465 SER A 360 REMARK 465 SER A 361 REMARK 465 GLY A 362 REMARK 465 VAL A 363 REMARK 465 SER A 364 REMARK 465 GLY A 365 REMARK 465 VAL A 366 REMARK 465 GLY A 367 REMARK 465 ALA A 368 REMARK 465 GLU A 369 REMARK 465 ARG A 370 REMARK 465 ARG A 371 REMARK 465 PRO A 372 REMARK 465 ARG A 373 REMARK 465 PRO A 374 REMARK 465 THR A 375 REMARK 465 THR A 376 REMARK 465 VAL A 377 REMARK 465 THR A 378 REMARK 465 ALA A 379 REMARK 465 VAL A 380 REMARK 465 HIS A 381 REMARK 465 SER A 382 REMARK 465 GLY A 383 REMARK 465 SER A 384 REMARK 465 LYS A 385 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 20 CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 PHE A 34 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 SER A 65 OG REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 ARG A 143 CD NE CZ NH1 NH2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 TYR A 222 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 227 OG REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 LEU A 234 CG CD1 CD2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 118.69 -160.16 REMARK 500 LYS A 26 -133.27 -126.92 REMARK 500 PHE A 34 37.82 -142.42 REMARK 500 LYS A 62 47.31 -73.52 REMARK 500 ARG A 143 -4.57 74.10 REMARK 500 PHE A 240 76.56 -101.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BFM A 1 385 UNP Q8IU85 KCC1D_HUMAN 1 385 SEQRES 1 A 385 MET ALA ARG GLU ASN GLY GLU SER SER SER SER TRP LYS SEQRES 2 A 385 LYS GLN ALA GLU ASP ILE LYS LYS ILE PHE GLU PHE LYS SEQRES 3 A 385 GLU THR LEU GLY THR GLY ALA PHE SER GLU VAL VAL LEU SEQRES 4 A 385 ALA GLU GLU LYS ALA THR GLY LYS LEU PHE ALA VAL LYS SEQRES 5 A 385 CYS ILE PRO LYS LYS ALA LEU LYS GLY LYS GLU SER SER SEQRES 6 A 385 ILE GLU ASN GLU ILE ALA VAL LEU ARG LYS ILE LYS HIS SEQRES 7 A 385 GLU ASN ILE VAL ALA LEU GLU ASP ILE TYR GLU SER PRO SEQRES 8 A 385 ASN HIS LEU TYR LEU VAL MET GLN LEU VAL SER GLY GLY SEQRES 9 A 385 GLU LEU PHE ASP ARG ILE VAL GLU LYS GLY PHE TYR THR SEQRES 10 A 385 GLU LYS ASP ALA SER THR LEU ILE ARG GLN VAL LEU ASP SEQRES 11 A 385 ALA VAL TYR TYR LEU HIS ARG MET GLY ILE VAL HIS ARG SEQRES 12 A 385 ASP LEU LYS PRO GLU ASN LEU LEU TYR TYR SER GLN ASP SEQRES 13 A 385 GLU GLU SER LYS ILE MET ILE SER ASP PHE GLY LEU SER SEQRES 14 A 385 LYS MET GLU GLY LYS GLY ASP VAL MET SER THR ALA CYS SEQRES 15 A 385 GLY THR PRO GLY TYR VAL ALA PRO GLU VAL LEU ALA GLN SEQRES 16 A 385 LYS PRO TYR SER LYS ALA VAL ASP CYS TRP SER ILE GLY SEQRES 17 A 385 VAL ILE ALA TYR ILE LEU LEU CYS GLY TYR PRO PRO PHE SEQRES 18 A 385 TYR ASP GLU ASN ASP SER LYS LEU PHE GLU GLN ILE LEU SEQRES 19 A 385 LYS ALA GLU TYR GLU PHE ASP SER PRO TYR TRP ASP ASP SEQRES 20 A 385 ILE SER ASP SER ALA LYS ASP PHE ILE ARG ASN LEU MET SEQRES 21 A 385 GLU LYS ASP PRO ASN LYS ARG TYR THR CYS GLU GLN ALA SEQRES 22 A 385 ALA ARG HIS PRO TRP ILE ALA GLY ASP THR ALA LEU ASN SEQRES 23 A 385 LYS ASN ILE HIS GLU SER VAL SER ALA GLN ILE ARG LYS SEQRES 24 A 385 ASN PHE ALA LYS SER LYS TRP ARG GLN ALA PHE ASN ALA SEQRES 25 A 385 THR ALA VAL VAL ARG HIS MET ARG LYS LEU HIS LEU GLY SEQRES 26 A 385 SER SER LEU ASP SER SER ASN ALA SER VAL SER SER SER SEQRES 27 A 385 LEU SER LEU ALA SER GLN LYS ASP CYS LEU ALA PRO SER SEQRES 28 A 385 THR LEU CYS SER PHE ILE SER SER SER SER GLY VAL SER SEQRES 29 A 385 GLY VAL GLY ALA GLU ARG ARG PRO ARG PRO THR THR VAL SEQRES 30 A 385 THR ALA VAL HIS SER GLY SER LYS HET SO4 A 401 5 HET SO4 A 402 5 HET QI6 A 403 14 HET QI6 A 404 14 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HETNAM SO4 SULFATE ION HETNAM QI6 PYRAZOLO[5,1-A]PHTHALAZIN-6-AMINE FORMUL 2 SO4 5(O4 S 2-) FORMUL 4 QI6 2(C10 H8 N4) FORMUL 9 HOH *113(H2 O) HELIX 1 AA1 ASP A 18 LYS A 21 5 4 HELIX 2 AA2 LYS A 57 LYS A 60 5 4 HELIX 3 AA3 LYS A 62 ARG A 74 1 13 HELIX 4 AA4 GLU A 105 LYS A 113 1 9 HELIX 5 AA5 THR A 117 MET A 138 1 22 HELIX 6 AA6 LYS A 146 GLU A 148 5 3 HELIX 7 AA7 LYS A 200 GLY A 217 1 18 HELIX 8 AA8 SER A 227 LYS A 235 1 9 HELIX 9 AA9 SER A 249 MET A 260 1 12 HELIX 10 AB1 THR A 269 HIS A 276 1 8 HELIX 11 AB2 HIS A 276 GLY A 281 1 6 HELIX 12 AB3 ILE A 289 PHE A 301 1 13 SHEET 1 AA1 6 LYS A 14 GLN A 15 0 SHEET 2 AA1 6 LEU A 84 GLU A 89 1 O ILE A 87 N LYS A 14 SHEET 3 AA1 6 HIS A 93 GLN A 99 -1 O TYR A 95 N TYR A 88 SHEET 4 AA1 6 LEU A 48 PRO A 55 -1 N ALA A 50 O MET A 98 SHEET 5 AA1 6 GLU A 36 GLU A 42 -1 N GLU A 36 O CYS A 53 SHEET 6 AA1 6 PHE A 23 THR A 31 -1 N GLU A 27 O LEU A 39 SHEET 1 AA2 2 LEU A 150 TYR A 152 0 SHEET 2 AA2 2 ILE A 161 ILE A 163 -1 O MET A 162 N LEU A 151 CISPEP 1 SER A 242 PRO A 243 0 -0.51 CRYST1 57.531 44.800 108.589 90.00 104.26 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017382 0.000000 0.004419 0.00000 SCALE2 0.000000 0.022321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009502 0.00000