data_8BG0 # _entry.id 8BG0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8BG0 pdb_00008bg0 10.2210/pdb8bg0/pdb WWPDB D_1292126277 ? ? EMDB EMD-16023 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details ;Amyloid-beta tetrameric filaments with the Arctic mutation (E22G) from Alzheimer's disease brains | ABeta40 ; _pdbx_database_related.db_id EMD-16023 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8BG0 _pdbx_database_status.recvd_initial_deposition_date 2022-10-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yang, Y.' 1 ? 'Zhang, W.J.' 2 ? 'Murzin, A.G.' 3 ? 'Schweighauser, M.' 4 ? 'Huang, M.' 5 ? 'Lovestam, S.K.A.' 6 ? 'Peak-Chew, S.Y.' 7 ? 'Macdonald, J.' 8 ? 'Lavenir, I.' 9 ? 'Ghetti, B.' 10 ? 'Graff, C.' 11 ? 'Kumar, A.' 12 ? 'Nordber, A.' 13 ? 'Goedert, M.' 14 ? 'Scheres, S.H.W.' 15 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Neuropathol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1432-0533 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 145 _citation.language ? _citation.page_first 325 _citation.page_last 333 _citation.title 'Cryo-EM structures of amyloid-beta filaments with the Arctic mutation (E22G) from human and mouse brains.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s00401-022-02533-1 _citation.pdbx_database_id_PubMed 36611124 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, Y.' 1 ? primary 'Zhang, W.' 2 ? primary 'Murzin, A.G.' 3 ? primary 'Schweighauser, M.' 4 ? primary 'Huang, M.' 5 ? primary 'Lovestam, S.' 6 ? primary 'Peak-Chew, S.Y.' 7 ? primary 'Saito, T.' 8 ? primary 'Saido, T.C.' 9 ? primary 'Macdonald, J.' 10 ? primary 'Lavenir, I.' 11 ? primary 'Ghetti, B.' 12 ? primary 'Graff, C.' 13 ? primary 'Kumar, A.' 14 ? primary 'Nordberg, A.' 15 ? primary 'Goedert, M.' 16 ? primary 'Scheres, S.H.W.' 17 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8BG0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8BG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Amyloid-beta precursor protein' 4335.852 4 ? ? ? ? 2 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;APP,ABPP,APPI,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta A4 protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_seq_one_letter_code_can DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_strand_id D,A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 ASP n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLU n 1 23 ASP n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 40 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform P05067-6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _struct_ref.pdbx_align_begin 616 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8BG0 D 1 ? 40 ? P05067 616 ? 655 ? 1 40 2 1 8BG0 A 1 ? 40 ? P05067 616 ? 655 ? 1 40 3 1 8BG0 B 1 ? 40 ? P05067 616 ? 655 ? 1 40 4 1 8BG0 C 1 ? 40 ? P05067 616 ? 655 ? 1 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8BG0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 52.765 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.831 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8BG0 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 109.70 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 211933 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.32335 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.32335 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.039 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 3.130 _refine.overall_SU_ML 0.077 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 824 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 0.012 824 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.000 0.016 814 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.242 1.608 1102 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 0.459 1.588 1872 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 6.841 5.000 108 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 12.616 10.000 136 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.063 0.200 126 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 0.020 924 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.001 0.020 164 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? 4.575 4.961 444 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 4.563 4.957 444 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 6.703 7.399 548 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 6.722 7.404 549 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 5.857 5.804 380 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 5.849 5.805 381 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 9.034 8.421 555 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 11.413 55.538 705 ? r_long_range_B_refined ? ? 'ELECTRON MICROSCOPY' ? 11.420 55.452 704 ? r_long_range_B_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_rigid_bond_restr ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 15650 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.593 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 generate ? 0.978800 -0.204817 0.000000 0.204817 0.978800 0.000000 0.000000 0.000000 1.000000 22.13828 -17.98528 -18.94336 3 generate ? 0.988057 -0.154091 0.000000 0.154091 0.988057 0.000000 0.000000 0.000000 1.000000 16.26304 -13.92335 -14.20752 4 generate ? 0.994686 -0.102955 0.000000 0.102955 0.994686 0.000000 0.000000 0.000000 1.000000 10.60499 -9.56397 -9.47168 5 generate ? 0.998671 -0.051546 0.000000 0.051546 0.998671 0.000000 0.000000 0.000000 1.000000 5.17917 -4.91874 -4.73584 6 generate ? 0.998671 0.051546 0.000000 -0.051546 0.998671 0.000000 0.000000 0.000000 1.000000 -4.91874 5.17917 4.73584 7 generate ? 0.994686 0.102955 0.000000 -0.102955 0.994686 0.000000 0.000000 0.000000 1.000000 -9.56397 10.60499 9.47168 8 generate ? 0.988057 0.154091 0.000000 -0.154091 0.988057 0.000000 0.000000 0.000000 1.000000 -13.92335 16.26304 14.20752 # _struct.entry_id 8BG0 _struct.title ;Amyloid-beta tetrameric filaments with the Arctic mutation (E22G) from Alzheimer's disease brains | ABeta40 ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8BG0 _struct_keywords.text 'Amyloid, amyloid-beta, Arctic mutation, APP, filaments, E22G, E693G, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? # _atom_sites.entry_id 8BG0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? D . n A 1 2 ALA 2 2 ? ? ? D . n A 1 3 GLU 3 3 ? ? ? D . n A 1 4 PHE 4 4 ? ? ? D . n A 1 5 ARG 5 5 ? ? ? D . n A 1 6 HIS 6 6 ? ? ? D . n A 1 7 ASP 7 7 ? ? ? D . n A 1 8 SER 8 8 ? ? ? D . n A 1 9 GLY 9 9 ? ? ? D . n A 1 10 TYR 10 10 ? ? ? D . n A 1 11 GLU 11 11 11 GLU GLU D . n A 1 12 VAL 12 12 12 VAL VAL D . n A 1 13 HIS 13 13 13 HIS HIS D . n A 1 14 HIS 14 14 14 HIS HIS D . n A 1 15 GLN 15 15 15 GLN GLN D . n A 1 16 LYS 16 16 16 LYS LYS D . n A 1 17 LEU 17 17 17 LEU LEU D . n A 1 18 VAL 18 18 18 VAL VAL D . n A 1 19 PHE 19 19 19 PHE PHE D . n A 1 20 PHE 20 20 20 PHE PHE D . n A 1 21 ALA 21 21 21 ALA ALA D . n A 1 22 GLU 22 22 22 GLU GLY D . n A 1 23 ASP 23 23 23 ASP ASP D . n A 1 24 VAL 24 24 24 VAL VAL D . n A 1 25 GLY 25 25 25 GLY GLY D . n A 1 26 SER 26 26 26 SER SER D . n A 1 27 ASN 27 27 27 ASN ASN D . n A 1 28 LYS 28 28 28 LYS LYS D . n A 1 29 GLY 29 29 29 GLY GLY D . n A 1 30 ALA 30 30 30 ALA ALA D . n A 1 31 ILE 31 31 31 ILE ILE D . n A 1 32 ILE 32 32 32 ILE ILE D . n A 1 33 GLY 33 33 33 GLY GLY D . n A 1 34 LEU 34 34 34 LEU LEU D . n A 1 35 MET 35 35 35 MET MET D . n A 1 36 VAL 36 36 36 VAL VAL D . n A 1 37 GLY 37 37 37 GLY GLY D . n A 1 38 GLY 38 38 ? ? ? D . n A 1 39 VAL 39 39 ? ? ? D . n A 1 40 VAL 40 40 ? ? ? D . n B 1 1 ASP 1 1 ? ? ? A . n B 1 2 ALA 2 2 ? ? ? A . n B 1 3 GLU 3 3 ? ? ? A . n B 1 4 PHE 4 4 ? ? ? A . n B 1 5 ARG 5 5 ? ? ? A . n B 1 6 HIS 6 6 ? ? ? A . n B 1 7 ASP 7 7 ? ? ? A . n B 1 8 SER 8 8 ? ? ? A . n B 1 9 GLY 9 9 ? ? ? A . n B 1 10 TYR 10 10 ? ? ? A . n B 1 11 GLU 11 11 ? ? ? A . n B 1 12 VAL 12 12 12 VAL VAL A . n B 1 13 HIS 13 13 13 HIS HIS A . n B 1 14 HIS 14 14 14 HIS HIS A . n B 1 15 GLN 15 15 15 GLN GLN A . n B 1 16 LYS 16 16 16 LYS LYS A . n B 1 17 LEU 17 17 17 LEU LEU A . n B 1 18 VAL 18 18 18 VAL VAL A . n B 1 19 PHE 19 19 19 PHE PHE A . n B 1 20 PHE 20 20 20 PHE PHE A . n B 1 21 ALA 21 21 21 ALA ALA A . n B 1 22 GLU 22 22 22 GLU GLY A . n B 1 23 ASP 23 23 23 ASP ASP A . n B 1 24 VAL 24 24 24 VAL VAL A . n B 1 25 GLY 25 25 25 GLY GLY A . n B 1 26 SER 26 26 26 SER SER A . n B 1 27 ASN 27 27 27 ASN ASN A . n B 1 28 LYS 28 28 28 LYS LYS A . n B 1 29 GLY 29 29 29 GLY GLY A . n B 1 30 ALA 30 30 30 ALA ALA A . n B 1 31 ILE 31 31 31 ILE ILE A . n B 1 32 ILE 32 32 32 ILE ILE A . n B 1 33 GLY 33 33 33 GLY GLY A . n B 1 34 LEU 34 34 34 LEU LEU A . n B 1 35 MET 35 35 35 MET MET A . n B 1 36 VAL 36 36 36 VAL VAL A . n B 1 37 GLY 37 37 37 GLY GLY A . n B 1 38 GLY 38 38 38 GLY GLY A . n B 1 39 VAL 39 39 39 VAL VAL A . n B 1 40 VAL 40 40 40 VAL VAL A . n C 1 1 ASP 1 1 ? ? ? B . n C 1 2 ALA 2 2 ? ? ? B . n C 1 3 GLU 3 3 ? ? ? B . n C 1 4 PHE 4 4 ? ? ? B . n C 1 5 ARG 5 5 ? ? ? B . n C 1 6 HIS 6 6 ? ? ? B . n C 1 7 ASP 7 7 ? ? ? B . n C 1 8 SER 8 8 ? ? ? B . n C 1 9 GLY 9 9 ? ? ? B . n C 1 10 TYR 10 10 ? ? ? B . n C 1 11 GLU 11 11 11 GLU GLU B . n C 1 12 VAL 12 12 12 VAL VAL B . n C 1 13 HIS 13 13 13 HIS HIS B . n C 1 14 HIS 14 14 14 HIS HIS B . n C 1 15 GLN 15 15 15 GLN GLN B . n C 1 16 LYS 16 16 16 LYS LYS B . n C 1 17 LEU 17 17 17 LEU LEU B . n C 1 18 VAL 18 18 18 VAL VAL B . n C 1 19 PHE 19 19 19 PHE PHE B . n C 1 20 PHE 20 20 20 PHE PHE B . n C 1 21 ALA 21 21 21 ALA ALA B . n C 1 22 GLU 22 22 22 GLU GLY B . n C 1 23 ASP 23 23 23 ASP ASP B . n C 1 24 VAL 24 24 24 VAL VAL B . n C 1 25 GLY 25 25 25 GLY GLY B . n C 1 26 SER 26 26 26 SER SER B . n C 1 27 ASN 27 27 27 ASN ASN B . n C 1 28 LYS 28 28 28 LYS LYS B . n C 1 29 GLY 29 29 29 GLY GLY B . n C 1 30 ALA 30 30 30 ALA ALA B . n C 1 31 ILE 31 31 31 ILE ILE B . n C 1 32 ILE 32 32 32 ILE ILE B . n C 1 33 GLY 33 33 33 GLY GLY B . n C 1 34 LEU 34 34 34 LEU LEU B . n C 1 35 MET 35 35 35 MET MET B . n C 1 36 VAL 36 36 36 VAL VAL B . n C 1 37 GLY 37 37 37 GLY GLY B . n C 1 38 GLY 38 38 ? ? ? B . n C 1 39 VAL 39 39 ? ? ? B . n C 1 40 VAL 40 40 ? ? ? B . n D 1 1 ASP 1 1 ? ? ? C . n D 1 2 ALA 2 2 ? ? ? C . n D 1 3 GLU 3 3 ? ? ? C . n D 1 4 PHE 4 4 ? ? ? C . n D 1 5 ARG 5 5 ? ? ? C . n D 1 6 HIS 6 6 ? ? ? C . n D 1 7 ASP 7 7 ? ? ? C . n D 1 8 SER 8 8 ? ? ? C . n D 1 9 GLY 9 9 ? ? ? C . n D 1 10 TYR 10 10 ? ? ? C . n D 1 11 GLU 11 11 ? ? ? C . n D 1 12 VAL 12 12 12 VAL VAL C . n D 1 13 HIS 13 13 13 HIS HIS C . n D 1 14 HIS 14 14 14 HIS HIS C . n D 1 15 GLN 15 15 15 GLN GLN C . n D 1 16 LYS 16 16 16 LYS LYS C . n D 1 17 LEU 17 17 17 LEU LEU C . n D 1 18 VAL 18 18 18 VAL VAL C . n D 1 19 PHE 19 19 19 PHE PHE C . n D 1 20 PHE 20 20 20 PHE PHE C . n D 1 21 ALA 21 21 21 ALA ALA C . n D 1 22 GLU 22 22 22 GLU GLY C . n D 1 23 ASP 23 23 23 ASP ASP C . n D 1 24 VAL 24 24 24 VAL VAL C . n D 1 25 GLY 25 25 25 GLY GLY C . n D 1 26 SER 26 26 26 SER SER C . n D 1 27 ASN 27 27 27 ASN ASN C . n D 1 28 LYS 28 28 28 LYS LYS C . n D 1 29 GLY 29 29 29 GLY GLY C . n D 1 30 ALA 30 30 30 ALA ALA C . n D 1 31 ILE 31 31 31 ILE ILE C . n D 1 32 ILE 32 32 32 ILE ILE C . n D 1 33 GLY 33 33 33 GLY GLY C . n D 1 34 LEU 34 34 34 LEU LEU C . n D 1 35 MET 35 35 35 MET MET C . n D 1 36 VAL 36 36 36 VAL VAL C . n D 1 37 GLY 37 37 37 GLY GLY C . n D 1 38 GLY 38 38 38 GLY GLY C . n D 1 39 VAL 39 39 39 VAL VAL C . n D 1 40 VAL 40 40 40 VAL VAL C . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 mg@mrc-lmb.cam.ac.uk Michel Goedert ? 'principal investigator/group leader' 0000-0002-5214-7886 3 scheres@mrc-lmb.cam.ac.uk Sjors Scheres H.W. 'principal investigator/group leader' 0000-0002-0462-6540 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 101 4 HOH HOH D . E 2 HOH 2 102 3 HOH HOH D . E 2 HOH 3 103 6 HOH HOH D . E 2 HOH 4 104 7 HOH HOH D . E 2 HOH 5 105 9 HOH HOH D . E 2 HOH 6 106 8 HOH HOH D . F 2 HOH 1 101 12 HOH HOH B . F 2 HOH 2 102 1 HOH HOH B . F 2 HOH 3 103 2 HOH HOH B . F 2 HOH 4 104 10 HOH HOH B . F 2 HOH 5 105 11 HOH HOH B . G 2 HOH 1 101 5 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 ? 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'point symmetry operation' ? ? 0.998671 -0.051546 0.000000 5.17917 0.051546 0.998671 0.000000 -4.91874 0.000000 0.000000 1.000000 -4.73584 3 'point symmetry operation' ? ? 0.998671 0.051546 0.000000 -4.91874 -0.051546 0.998671 0.000000 5.17917 0.000000 0.000000 1.000000 4.73584 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-01-18 2 'Structure model' 1 1 2023-01-25 3 'Structure model' 1 2 2023-02-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation_author.identifier_ORCID' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0352 _software.pdbx_ordinal 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8BG0 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8BG0 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 1.99 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 115228 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name ;Amyloid-beta filaments extracted from the human brain with Arctic mutation (E693G) of Alzheimer's disease ; _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8BG0 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8BG0 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8BG0 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS D 14 ? ? 62.57 72.23 2 1 PHE D 20 ? ? 73.24 78.40 3 1 GLU D 22 ? ? -94.26 -148.30 4 1 LYS A 16 ? ? 38.40 56.25 5 1 GLU A 22 ? ? -95.54 -154.35 6 1 HIS B 14 ? ? 62.48 72.43 7 1 PHE B 20 ? ? 73.36 77.99 8 1 GLU B 22 ? ? -94.95 -148.77 9 1 LYS C 16 ? ? 38.16 55.90 10 1 GLU C 22 ? ? -95.99 -154.53 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? D HOH 105 ? 6.03 . 2 1 O ? D HOH 106 ? 6.52 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D GLU 22 ? CB ? A GLU 22 CB 2 1 Y 1 D GLU 22 ? CG ? A GLU 22 CG 3 1 Y 1 D GLU 22 ? CD ? A GLU 22 CD 4 1 Y 1 D GLU 22 ? OE1 ? A GLU 22 OE1 5 1 Y 1 D GLU 22 ? OE2 ? A GLU 22 OE2 6 1 Y 1 A GLU 22 ? CB ? B GLU 22 CB 7 1 Y 1 A GLU 22 ? CG ? B GLU 22 CG 8 1 Y 1 A GLU 22 ? CD ? B GLU 22 CD 9 1 Y 1 A GLU 22 ? OE1 ? B GLU 22 OE1 10 1 Y 1 A GLU 22 ? OE2 ? B GLU 22 OE2 11 1 Y 1 B GLU 22 ? CB ? C GLU 22 CB 12 1 Y 1 B GLU 22 ? CG ? C GLU 22 CG 13 1 Y 1 B GLU 22 ? CD ? C GLU 22 CD 14 1 Y 1 B GLU 22 ? OE1 ? C GLU 22 OE1 15 1 Y 1 B GLU 22 ? OE2 ? C GLU 22 OE2 16 1 Y 1 C GLU 22 ? CB ? D GLU 22 CB 17 1 Y 1 C GLU 22 ? CG ? D GLU 22 CG 18 1 Y 1 C GLU 22 ? CD ? D GLU 22 CD 19 1 Y 1 C GLU 22 ? OE1 ? D GLU 22 OE1 20 1 Y 1 C GLU 22 ? OE2 ? D GLU 22 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D ASP 1 ? A ASP 1 2 1 Y 1 D ALA 2 ? A ALA 2 3 1 Y 1 D GLU 3 ? A GLU 3 4 1 Y 1 D PHE 4 ? A PHE 4 5 1 Y 1 D ARG 5 ? A ARG 5 6 1 Y 1 D HIS 6 ? A HIS 6 7 1 Y 1 D ASP 7 ? A ASP 7 8 1 Y 1 D SER 8 ? A SER 8 9 1 Y 1 D GLY 9 ? A GLY 9 10 1 Y 1 D TYR 10 ? A TYR 10 11 1 Y 1 D GLY 38 ? A GLY 38 12 1 Y 1 D VAL 39 ? A VAL 39 13 1 Y 1 D VAL 40 ? A VAL 40 14 1 Y 1 A ASP 1 ? B ASP 1 15 1 Y 1 A ALA 2 ? B ALA 2 16 1 Y 1 A GLU 3 ? B GLU 3 17 1 Y 1 A PHE 4 ? B PHE 4 18 1 Y 1 A ARG 5 ? B ARG 5 19 1 Y 1 A HIS 6 ? B HIS 6 20 1 Y 1 A ASP 7 ? B ASP 7 21 1 Y 1 A SER 8 ? B SER 8 22 1 Y 1 A GLY 9 ? B GLY 9 23 1 Y 1 A TYR 10 ? B TYR 10 24 1 Y 1 A GLU 11 ? B GLU 11 25 1 Y 1 B ASP 1 ? C ASP 1 26 1 Y 1 B ALA 2 ? C ALA 2 27 1 Y 1 B GLU 3 ? C GLU 3 28 1 Y 1 B PHE 4 ? C PHE 4 29 1 Y 1 B ARG 5 ? C ARG 5 30 1 Y 1 B HIS 6 ? C HIS 6 31 1 Y 1 B ASP 7 ? C ASP 7 32 1 Y 1 B SER 8 ? C SER 8 33 1 Y 1 B GLY 9 ? C GLY 9 34 1 Y 1 B TYR 10 ? C TYR 10 35 1 Y 1 B GLY 38 ? C GLY 38 36 1 Y 1 B VAL 39 ? C VAL 39 37 1 Y 1 B VAL 40 ? C VAL 40 38 1 Y 1 C ASP 1 ? D ASP 1 39 1 Y 1 C ALA 2 ? D ALA 2 40 1 Y 1 C GLU 3 ? D GLU 3 41 1 Y 1 C PHE 4 ? D PHE 4 42 1 Y 1 C ARG 5 ? D ARG 5 43 1 Y 1 C HIS 6 ? D HIS 6 44 1 Y 1 C ASP 7 ? D ASP 7 45 1 Y 1 C SER 8 ? D SER 8 46 1 Y 1 C GLY 9 ? D GLY 9 47 1 Y 1 C TYR 10 ? D TYR 10 48 1 Y 1 C GLU 11 ? D GLU 11 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -2.93 _em_helical_entity.axial_rise_per_subunit 4.74 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? RELION ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? REFMAC ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION ? CLASSIFICATION ? 12 1 ? ? RELION ? RECONSTRUCTION ? 13 1 ? ? RELION ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UP_A025-1013 1 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_U105184291 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #