data_8BGK # _entry.id 8BGK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8BGK pdb_00008bgk 10.2210/pdb8bgk/pdb WWPDB D_1292126154 ? ? BMRB 34767 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR Structure of Big-defensin 5 from oyster Crassostrea gigas' _pdbx_database_related.db_id 34767 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8BGK _pdbx_database_status.recvd_initial_deposition_date 2022-10-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Loth, K.' 1 ? 'Asokan, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Total synthesis and 3D structure determination of a highly hydrophobic antimicrobial Crassostrea gigas big defensin, enduring challenges rescue by a solubilizing tag ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Asokan, A.' 1 ? primary 'Delmas, A.F.' 2 ? primary 'Aucagne, V.' 3 ? primary 'Loth, K.' 4 ? primary 'Meudal, H.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Cg-BigDef5 _entity.formula_weight 9977.422 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation MET14NLE _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;WAQALLPIWTYTQ(NLE)TVSAPLFAALVAAYGIYAVTRYGIKKARTRNDSHQCANNRGWCRKSCFGHEYIDWYYTDVCG SFYCCRPRN(NLW) ; _entity_poly.pdbx_seq_one_letter_code_can ;WAQALLPIWTYTQLTVSAPLFAALVAAYGIYAVTRYGIKKARTRNDSHQCANNRGWCRKSCFGHEYIDWYYTDVCGSFYC CRPRNL ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 ALA n 1 3 GLN n 1 4 ALA n 1 5 LEU n 1 6 LEU n 1 7 PRO n 1 8 ILE n 1 9 TRP n 1 10 THR n 1 11 TYR n 1 12 THR n 1 13 GLN n 1 14 NLE n 1 15 THR n 1 16 VAL n 1 17 SER n 1 18 ALA n 1 19 PRO n 1 20 LEU n 1 21 PHE n 1 22 ALA n 1 23 ALA n 1 24 LEU n 1 25 VAL n 1 26 ALA n 1 27 ALA n 1 28 TYR n 1 29 GLY n 1 30 ILE n 1 31 TYR n 1 32 ALA n 1 33 VAL n 1 34 THR n 1 35 ARG n 1 36 TYR n 1 37 GLY n 1 38 ILE n 1 39 LYS n 1 40 LYS n 1 41 ALA n 1 42 ARG n 1 43 THR n 1 44 ARG n 1 45 ASN n 1 46 ASP n 1 47 SER n 1 48 HIS n 1 49 GLN n 1 50 CYS n 1 51 ALA n 1 52 ASN n 1 53 ASN n 1 54 ARG n 1 55 GLY n 1 56 TRP n 1 57 CYS n 1 58 ARG n 1 59 LYS n 1 60 SER n 1 61 CYS n 1 62 PHE n 1 63 GLY n 1 64 HIS n 1 65 GLU n 1 66 TYR n 1 67 ILE n 1 68 ASP n 1 69 TRP n 1 70 TYR n 1 71 TYR n 1 72 THR n 1 73 ASP n 1 74 VAL n 1 75 CYS n 1 76 GLY n 1 77 SER n 1 78 PHE n 1 79 TYR n 1 80 CYS n 1 81 CYS n 1 82 ARG n 1 83 PRO n 1 84 ARG n 1 85 ASN n 1 86 NLW n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 86 _pdbx_entity_src_syn.organism_scientific 'Crassostrea gigas' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 29159 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8BGK _struct_ref.pdbx_db_accession 8BGK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8BGK _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8BGK _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 86 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 86 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 NLW 'L-peptide linking' n L-leucinamide ? 'C6 H14 N2 O' 130.188 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 4.7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1 mM Cg-BigDef5, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label unlabelled _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III HD 700' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 8BGK _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 8BGK _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8BGK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'peak picking' 'CcpNmr Analysis' ? CCPN 4 'structure calculation' ARIA ? ;Linge, O'Donoghue and Nilges ; # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8BGK _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8BGK _struct.title 'NMR Structure of Big-defensin 5 from oyster Crassostrea gigas' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8BGK _struct_keywords.text 'Antibacterial peptide, beta Defensin, Diversity, Evolution, Microbiome, Invertebrate, Mollusk, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 17 ? TYR A 28 ? SER B 17 TYR B 28 1 ? 12 HELX_P HELX_P2 AA2 GLY A 29 ? GLY A 37 ? GLY B 29 GLY B 37 1 ? 9 HELX_P HELX_P3 AA3 TYR A 71 ? GLY A 76 ? TYR B 71 GLY B 76 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 80 SG ? ? B CYS 50 B CYS 80 1_555 ? ? ? ? ? ? ? 2.154 ? ? disulf2 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 75 SG ? ? B CYS 57 B CYS 75 1_555 ? ? ? ? ? ? ? 2.173 ? ? disulf3 disulf ? ? A CYS 61 SG ? ? ? 1_555 A CYS 81 SG ? ? B CYS 61 B CYS 81 1_555 ? ? ? ? ? ? ? 2.228 ? ? covale1 covale both ? A GLN 13 C ? ? ? 1_555 A NLE 14 N ? ? B GLN 13 B NLE 14 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale2 covale both ? A NLE 14 C ? ? ? 1_555 A THR 15 N ? ? B NLE 14 B THR 15 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale3 covale both ? A ASN 85 C ? ? ? 1_555 A NLW 86 N ? ? B ASN 85 B NLW 86 1_555 ? ? ? ? ? ? ? 1.321 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 48 ? CYS A 50 ? HIS B 48 CYS B 50 AA1 2 GLY A 55 ? ARG A 58 ? GLY B 55 ARG B 58 AA1 3 TYR A 79 ? PRO A 83 ? TYR B 79 PRO B 83 AA1 4 GLU A 65 ? ASP A 68 ? GLU B 65 ASP B 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 50 ? N CYS B 50 O GLY A 55 ? O GLY B 55 AA1 2 3 N ARG A 58 ? N ARG B 58 O TYR A 79 ? O TYR B 79 AA1 3 4 O CYS A 80 ? O CYS B 80 N ASP A 68 ? N ASP B 68 # _atom_sites.entry_id 8BGK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1 1 TRP TRP B . n A 1 2 ALA 2 2 2 ALA ALA B . n A 1 3 GLN 3 3 3 GLN GLN B . n A 1 4 ALA 4 4 4 ALA ALA B . n A 1 5 LEU 5 5 5 LEU LEU B . n A 1 6 LEU 6 6 6 LEU LEU B . n A 1 7 PRO 7 7 7 PRO PRO B . n A 1 8 ILE 8 8 8 ILE ILE B . n A 1 9 TRP 9 9 9 TRP TRP B . n A 1 10 THR 10 10 10 THR THR B . n A 1 11 TYR 11 11 11 TYR TYR B . n A 1 12 THR 12 12 12 THR THR B . n A 1 13 GLN 13 13 13 GLN GLN B . n A 1 14 NLE 14 14 14 NLE NLE B . n A 1 15 THR 15 15 15 THR THR B . n A 1 16 VAL 16 16 16 VAL VAL B . n A 1 17 SER 17 17 17 SER SER B . n A 1 18 ALA 18 18 18 ALA ALA B . n A 1 19 PRO 19 19 19 PRO PRO B . n A 1 20 LEU 20 20 20 LEU LEU B . n A 1 21 PHE 21 21 21 PHE PHE B . n A 1 22 ALA 22 22 22 ALA ALA B . n A 1 23 ALA 23 23 23 ALA ALA B . n A 1 24 LEU 24 24 24 LEU LEU B . n A 1 25 VAL 25 25 25 VAL VAL B . n A 1 26 ALA 26 26 26 ALA ALA B . n A 1 27 ALA 27 27 27 ALA ALA B . n A 1 28 TYR 28 28 28 TYR TYR B . n A 1 29 GLY 29 29 29 GLY GLY B . n A 1 30 ILE 30 30 30 ILE ILE B . n A 1 31 TYR 31 31 31 TYR TYR B . n A 1 32 ALA 32 32 32 ALA ALA B . n A 1 33 VAL 33 33 33 VAL VAL B . n A 1 34 THR 34 34 34 THR THR B . n A 1 35 ARG 35 35 35 ARG ARG B . n A 1 36 TYR 36 36 36 TYR TYR B . n A 1 37 GLY 37 37 37 GLY GLY B . n A 1 38 ILE 38 38 38 ILE ILE B . n A 1 39 LYS 39 39 39 LYS LYS B . n A 1 40 LYS 40 40 40 LYS LYS B . n A 1 41 ALA 41 41 41 ALA ALA B . n A 1 42 ARG 42 42 42 ARG ARG B . n A 1 43 THR 43 43 43 THR THR B . n A 1 44 ARG 44 44 44 ARG ARG B . n A 1 45 ASN 45 45 45 ASN ASN B . n A 1 46 ASP 46 46 46 ASP ASP B . n A 1 47 SER 47 47 47 SER SER B . n A 1 48 HIS 48 48 48 HIS HIS B . n A 1 49 GLN 49 49 49 GLN GLN B . n A 1 50 CYS 50 50 50 CYS CYS B . n A 1 51 ALA 51 51 51 ALA ALA B . n A 1 52 ASN 52 52 52 ASN ASN B . n A 1 53 ASN 53 53 53 ASN ASN B . n A 1 54 ARG 54 54 54 ARG ARG B . n A 1 55 GLY 55 55 55 GLY GLY B . n A 1 56 TRP 56 56 56 TRP TRP B . n A 1 57 CYS 57 57 57 CYS CYS B . n A 1 58 ARG 58 58 58 ARG ARG B . n A 1 59 LYS 59 59 59 LYS LYS B . n A 1 60 SER 60 60 60 SER SER B . n A 1 61 CYS 61 61 61 CYS CYS B . n A 1 62 PHE 62 62 62 PHE PHE B . n A 1 63 GLY 63 63 63 GLY GLY B . n A 1 64 HIS 64 64 64 HIS HIS B . n A 1 65 GLU 65 65 65 GLU GLU B . n A 1 66 TYR 66 66 66 TYR TYR B . n A 1 67 ILE 67 67 67 ILE ILE B . n A 1 68 ASP 68 68 68 ASP ASP B . n A 1 69 TRP 69 69 69 TRP TRP B . n A 1 70 TYR 70 70 70 TYR TYR B . n A 1 71 TYR 71 71 71 TYR TYR B . n A 1 72 THR 72 72 72 THR THR B . n A 1 73 ASP 73 73 73 ASP ASP B . n A 1 74 VAL 74 74 74 VAL VAL B . n A 1 75 CYS 75 75 75 CYS CYS B . n A 1 76 GLY 76 76 76 GLY GLY B . n A 1 77 SER 77 77 77 SER SER B . n A 1 78 PHE 78 78 78 PHE PHE B . n A 1 79 TYR 79 79 79 TYR TYR B . n A 1 80 CYS 80 80 80 CYS CYS B . n A 1 81 CYS 81 81 81 CYS CYS B . n A 1 82 ARG 82 82 82 ARG ARG B . n A 1 83 PRO 83 83 83 PRO PRO B . n A 1 84 ARG 84 84 84 ARG ARG B . n A 1 85 ASN 85 85 85 ASN ASN B . n A 1 86 NLW 86 86 86 NLW CLE B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email karine.loth@cnrs-orleans.fr _pdbx_contact_author.name_first Karine _pdbx_contact_author.name_last LOTH _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7058-8661 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-12-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_entry_details.entry_id 8BGK _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component Cg-BigDef5 _pdbx_nmr_exptl_sample.concentration 1 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HH12 B ARG 58 ? ? OE1 B GLU 65 ? ? 1.60 2 2 O B TRP 69 ? ? H B TYR 71 ? ? 1.58 3 5 O B TRP 69 ? ? H B TYR 71 ? ? 1.58 4 7 O B TRP 69 ? ? H B TYR 71 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA B 2 ? ? 61.85 -67.43 2 1 ALA B 4 ? ? -59.23 77.57 3 1 LEU B 5 ? ? -72.71 30.04 4 1 LEU B 6 ? ? -176.39 56.03 5 1 ILE B 8 ? ? -163.99 -97.75 6 1 TRP B 9 ? ? -56.41 -8.28 7 1 TYR B 11 ? ? -131.47 -84.01 8 1 THR B 12 ? ? -148.01 -83.24 9 1 GLN B 13 ? ? 171.67 113.59 10 1 VAL B 16 ? ? -134.84 -82.88 11 1 TYR B 28 ? ? -107.55 -63.28 12 1 ALA B 41 ? ? 58.97 87.19 13 1 ARG B 42 ? ? -178.80 -22.72 14 1 THR B 43 ? ? 68.15 141.89 15 1 ASN B 45 ? ? -141.30 -159.63 16 1 ASN B 52 ? ? 36.55 46.03 17 1 ASN B 53 ? ? -177.82 -38.52 18 1 SER B 60 ? ? 178.90 145.37 19 1 HIS B 64 ? ? -169.55 24.93 20 1 TRP B 69 ? ? -117.34 -137.72 21 1 TYR B 70 ? ? 69.56 -46.58 22 2 ALA B 4 ? ? -62.69 72.95 23 2 ILE B 8 ? ? -126.77 -93.37 24 2 TRP B 9 ? ? -56.34 0.36 25 2 TYR B 11 ? ? -110.46 -83.78 26 2 THR B 12 ? ? -141.85 -90.30 27 2 GLN B 13 ? ? 179.15 -110.10 28 2 NLE B 14 ? ? 69.63 174.84 29 2 VAL B 16 ? ? -128.77 -98.78 30 2 TYR B 28 ? ? -125.27 -68.08 31 2 ILE B 30 ? ? -178.40 -34.94 32 2 THR B 43 ? ? 67.42 112.36 33 2 ASN B 52 ? ? 39.88 27.48 34 2 ASN B 53 ? ? -164.38 -49.30 35 2 SER B 60 ? ? -179.76 149.25 36 2 TRP B 69 ? ? -100.09 -138.30 37 2 TYR B 70 ? ? 67.88 -54.54 38 2 ASN B 85 ? ? -75.77 -145.81 39 3 ALA B 2 ? ? 62.08 -60.48 40 3 ALA B 4 ? ? -55.75 90.22 41 3 LEU B 6 ? ? -164.21 61.71 42 3 ILE B 8 ? ? -161.24 -99.04 43 3 TRP B 9 ? ? -61.33 19.80 44 3 THR B 10 ? ? -149.86 -31.34 45 3 TYR B 11 ? ? -101.53 -83.71 46 3 THR B 12 ? ? -144.20 -106.09 47 3 GLN B 13 ? ? -167.42 73.63 48 3 VAL B 16 ? ? -137.38 -92.59 49 3 TYR B 28 ? ? -109.36 -65.19 50 3 THR B 43 ? ? 70.14 134.74 51 3 ARG B 44 ? ? -80.83 -76.57 52 3 ASN B 53 ? ? -176.00 -38.50 53 3 SER B 60 ? ? 179.50 142.56 54 3 HIS B 64 ? ? -161.27 23.80 55 3 TRP B 69 ? ? 64.75 -40.70 56 3 ASN B 85 ? ? -79.68 -145.09 57 4 LEU B 5 ? ? -69.78 -149.15 58 4 LEU B 6 ? ? 30.79 43.99 59 4 ILE B 8 ? ? -163.24 -104.41 60 4 TYR B 11 ? ? -104.82 -87.68 61 4 THR B 12 ? ? -143.06 -89.77 62 4 GLN B 13 ? ? 175.86 67.05 63 4 VAL B 16 ? ? -135.92 -94.86 64 4 ARG B 42 ? ? -165.81 28.91 65 4 THR B 43 ? ? 65.79 117.51 66 4 ASN B 45 ? ? 66.65 162.16 67 4 SER B 47 ? ? -48.04 150.30 68 4 ALA B 51 ? ? 69.55 -14.92 69 4 ASN B 53 ? ? -160.63 -41.41 70 4 HIS B 64 ? ? -159.95 26.25 71 4 TRP B 69 ? ? -101.96 -139.55 72 4 TYR B 70 ? ? 66.19 -61.69 73 5 ILE B 8 ? ? -164.14 -89.15 74 5 TYR B 11 ? ? -114.55 -89.53 75 5 THR B 12 ? ? -149.59 -91.48 76 5 GLN B 13 ? ? -175.58 123.29 77 5 VAL B 16 ? ? -121.27 -112.01 78 5 LYS B 40 ? ? -103.52 58.98 79 5 ALA B 41 ? ? 76.28 -10.72 80 5 ALA B 51 ? ? 74.08 -12.34 81 5 ASN B 53 ? ? -164.42 -52.04 82 5 SER B 60 ? ? -175.42 146.39 83 5 HIS B 64 ? ? -166.85 22.16 84 5 TRP B 69 ? ? -102.45 -145.50 85 5 TYR B 70 ? ? 61.32 -54.82 86 5 CYS B 80 ? ? -69.06 84.32 87 6 ALA B 4 ? ? -63.44 79.92 88 6 ILE B 8 ? ? -141.46 -90.90 89 6 TRP B 9 ? ? -61.27 10.99 90 6 THR B 10 ? ? -146.14 -22.68 91 6 TYR B 11 ? ? -106.06 -85.28 92 6 THR B 12 ? ? -133.46 -86.79 93 6 GLN B 13 ? ? -172.33 -68.75 94 6 NLE B 14 ? ? -76.98 -163.43 95 6 THR B 15 ? ? -33.21 125.86 96 6 VAL B 16 ? ? -138.72 -86.38 97 6 ARG B 42 ? ? -140.00 -89.29 98 6 THR B 43 ? ? -173.75 141.46 99 6 ASN B 45 ? ? 173.64 153.61 100 6 SER B 47 ? ? -38.81 141.14 101 6 ASN B 52 ? ? 36.24 37.41 102 6 ASN B 53 ? ? -173.79 -57.92 103 6 SER B 60 ? ? -177.29 139.40 104 6 TRP B 69 ? ? -113.25 -148.10 105 6 TYR B 70 ? ? 56.94 -1.58 106 6 TYR B 71 ? ? -142.70 -27.99 107 6 ASN B 85 ? ? -74.76 -143.03 108 7 LEU B 5 ? ? -75.58 21.42 109 7 LEU B 6 ? ? -173.54 58.42 110 7 PRO B 7 ? ? -88.63 45.28 111 7 ILE B 8 ? ? -149.22 -101.16 112 7 TRP B 9 ? ? -61.82 15.78 113 7 THR B 10 ? ? -141.97 -25.11 114 7 TYR B 11 ? ? -105.88 -73.40 115 7 THR B 12 ? ? -154.60 -87.32 116 7 GLN B 13 ? ? 166.72 89.02 117 7 VAL B 16 ? ? -140.69 -91.63 118 7 ARG B 42 ? ? -148.21 20.22 119 7 THR B 43 ? ? 67.76 126.03 120 7 ALA B 51 ? ? 69.32 -10.81 121 7 ASN B 53 ? ? -164.99 -40.37 122 7 SER B 60 ? ? -175.62 138.23 123 7 HIS B 64 ? ? -158.50 32.08 124 7 TRP B 69 ? ? -101.08 -144.37 125 7 TYR B 70 ? ? 66.10 -56.34 126 8 ALA B 4 ? ? -62.06 86.96 127 8 LEU B 5 ? ? -75.96 22.16 128 8 LEU B 6 ? ? -159.75 44.49 129 8 PRO B 7 ? ? -89.23 40.22 130 8 ILE B 8 ? ? -154.58 -90.42 131 8 TRP B 9 ? ? -59.10 -0.81 132 8 THR B 10 ? ? -140.22 13.10 133 8 TYR B 11 ? ? -135.96 -88.32 134 8 THR B 12 ? ? -150.95 -83.25 135 8 GLN B 13 ? ? 178.80 120.11 136 8 VAL B 16 ? ? -136.52 -93.64 137 8 ALA B 41 ? ? 64.84 83.01 138 8 ARG B 42 ? ? -173.99 15.14 139 8 ARG B 44 ? ? 55.40 -83.98 140 8 ASN B 45 ? ? -146.84 -154.65 141 8 ASN B 52 ? ? 47.96 21.04 142 8 ASN B 53 ? ? -171.16 -49.84 143 8 SER B 60 ? ? -175.28 139.05 144 8 HIS B 64 ? ? -162.54 35.05 145 8 TRP B 69 ? ? 49.57 -142.99 146 8 TYR B 70 ? ? 68.59 -48.61 147 9 ALA B 2 ? ? -152.59 11.16 148 9 GLN B 3 ? ? -146.41 28.81 149 9 ALA B 4 ? ? 30.03 67.92 150 9 LEU B 6 ? ? -154.00 45.98 151 9 PRO B 7 ? ? -85.93 36.49 152 9 ILE B 8 ? ? -149.85 -96.60 153 9 TRP B 9 ? ? -55.55 -8.45 154 9 TYR B 11 ? ? -88.57 -84.00 155 9 THR B 12 ? ? -148.37 -93.33 156 9 GLN B 13 ? ? -170.12 73.46 157 9 VAL B 16 ? ? -134.91 -96.61 158 9 THR B 43 ? ? 65.55 142.71 159 9 ARG B 44 ? ? -59.21 -71.24 160 9 ASN B 45 ? ? -126.79 -156.91 161 9 ALA B 51 ? ? 66.47 -3.48 162 9 ASN B 53 ? ? -179.40 -60.66 163 9 SER B 60 ? ? -177.48 129.23 164 9 HIS B 64 ? ? -98.06 30.75 165 9 TRP B 69 ? ? 61.51 -35.90 166 10 ALA B 4 ? ? -64.49 83.24 167 10 LEU B 6 ? ? -142.46 40.55 168 10 ILE B 8 ? ? -127.15 -89.29 169 10 TRP B 9 ? ? -57.40 -8.58 170 10 TYR B 11 ? ? -102.24 -84.78 171 10 THR B 12 ? ? -144.88 -85.65 172 10 GLN B 13 ? ? -165.61 -84.64 173 10 NLE B 14 ? ? 69.73 175.48 174 10 VAL B 16 ? ? -132.92 -96.71 175 10 TYR B 28 ? ? -107.05 -64.34 176 10 ARG B 42 ? ? -164.80 -93.98 177 10 ASN B 45 ? ? -150.74 -151.19 178 10 ALA B 51 ? ? 72.41 -20.78 179 10 ASN B 53 ? ? -151.43 -30.88 180 10 SER B 60 ? ? -176.01 149.39 181 10 HIS B 64 ? ? -169.19 39.52 182 10 TRP B 69 ? ? -112.62 -139.90 183 10 TYR B 70 ? ? 69.00 -55.28 # _pdbx_audit_support.funding_organization 'Agence Nationale de la Recherche (ANR)' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ANR-19-CE18-0025 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #