HEADER TRANSFERASE 28-OCT-22 8BGZ TITLE O-METHYLTRANSFERASE PLU4890 (MUTANT H229N) IN COMPLEX WITH SAH AND AQ- TITLE 2 256 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE PLU4890 H229N MUTANT; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LAUMONDII SUBSP. LAUMONDII TTO1; SOURCE 3 ORGANISM_TAXID: 243265; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, POLYKETIDE, ANTHRAQUINONE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.HUBER,M.GROLL REVDAT 5 07-FEB-24 8BGZ 1 REMARK REVDAT 4 15-NOV-23 8BGZ 1 SOURCE REVDAT 3 17-MAY-23 8BGZ 1 JRNL REVDAT 2 05-APR-23 8BGZ 1 JRNL REVDAT 1 08-MAR-23 8BGZ 0 JRNL AUTH E.M.HUBER,L.KRELING,A.K.HEINRICH,M.DUNNEBACKE,A.POTHIG, JRNL AUTH 2 H.B.BODE,M.GROLL JRNL TITL A SET OF CLOSELY RELATED METHYLTRANSFERASES FOR JRNL TITL 2 SITE-SPECIFIC TAILORING OF ANTHRAQUINONE PIGMENTS. JRNL REF STRUCTURE V. 31 573 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 36963398 JRNL DOI 10.1016/J.STR.2023.03.001 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 101773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 399 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 223 REMARK 3 SOLVENT ATOMS : 560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 1.34000 REMARK 3 B33 (A**2) : -2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.908 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10786 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 9821 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14549 ; 1.140 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22798 ; 1.117 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1284 ; 5.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 582 ;32.473 ;22.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1899 ;13.340 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;16.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1338 ; 0.042 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12039 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2365 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 20607 ; 0.414 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -40.0189 -11.3285 17.2451 REMARK 3 T TENSOR REMARK 3 T11: 0.0110 T22: 0.0033 REMARK 3 T33: 0.0295 T12: 0.0020 REMARK 3 T13: -0.0177 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0447 L22: 0.0270 REMARK 3 L33: 0.0944 L12: -0.0133 REMARK 3 L13: -0.0364 L23: -0.0276 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0118 S13: 0.0027 REMARK 3 S21: 0.0040 S22: 0.0027 S23: -0.0009 REMARK 3 S31: -0.0041 S32: 0.0105 S33: 0.0009 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): -53.1269 -12.3634 -18.1012 REMARK 3 T TENSOR REMARK 3 T11: 0.0131 T22: 0.0017 REMARK 3 T33: 0.0306 T12: -0.0027 REMARK 3 T13: -0.0176 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0181 L22: 0.0142 REMARK 3 L33: 0.1050 L12: 0.0108 REMARK 3 L13: 0.0119 L23: 0.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: 0.0053 S13: -0.0008 REMARK 3 S21: -0.0076 S22: 0.0024 S23: 0.0026 REMARK 3 S31: -0.0146 S32: 0.0018 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 402 REMARK 3 ORIGIN FOR THE GROUP (A): -36.6695 6.7256 -64.6211 REMARK 3 T TENSOR REMARK 3 T11: 0.0091 T22: 0.0030 REMARK 3 T33: 0.0317 T12: -0.0017 REMARK 3 T13: -0.0161 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0781 L22: 0.0183 REMARK 3 L33: 0.0409 L12: 0.0293 REMARK 3 L13: 0.0320 L23: 0.0144 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0105 S13: -0.0048 REMARK 3 S21: 0.0046 S22: -0.0071 S23: -0.0017 REMARK 3 S31: 0.0046 S32: -0.0025 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 402 REMARK 3 ORIGIN FOR THE GROUP (A): -66.7554 -32.9954 -65.3667 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: 0.0023 REMARK 3 T33: 0.0318 T12: -0.0007 REMARK 3 T13: -0.0156 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0434 L22: 0.0176 REMARK 3 L33: 0.0625 L12: 0.0057 REMARK 3 L13: 0.0220 L23: 0.0094 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.0058 S13: -0.0034 REMARK 3 S21: 0.0034 S22: -0.0017 S23: -0.0011 REMARK 3 S31: 0.0043 S32: 0.0053 S33: -0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8BGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8BGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM NITRATE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5, 20 % PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.79500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -111.30607 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 38.79500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -166.89154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 248 -168.95 -101.90 REMARK 500 ASN D 164 -50.29 -122.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD1 REMARK 620 2 TYR A 128 O 64.9 REMARK 620 3 HOH A 604 O 98.8 49.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8BGT RELATED DB: PDB DBREF1 8BGZ A 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGZ A A0A6L9JR93 1 318 DBREF1 8BGZ B 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGZ B A0A6L9JR93 1 318 DBREF1 8BGZ C 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGZ C A0A6L9JR93 1 318 DBREF1 8BGZ D 1 318 UNP A0A6L9JR93_PHOLM DBREF2 8BGZ D A0A6L9JR93 1 318 SEQADV 8BGZ SER A 0 UNP A0A6L9JR9 EXPRESSION TAG SEQADV 8BGZ ASN A 229 UNP A0A6L9JR9 HIS 229 ENGINEERED MUTATION SEQADV 8BGZ SER B 0 UNP A0A6L9JR9 EXPRESSION TAG SEQADV 8BGZ ASN B 229 UNP A0A6L9JR9 HIS 229 ENGINEERED MUTATION SEQADV 8BGZ SER C 0 UNP A0A6L9JR9 EXPRESSION TAG SEQADV 8BGZ ASN C 229 UNP A0A6L9JR9 HIS 229 ENGINEERED MUTATION SEQADV 8BGZ SER D 0 UNP A0A6L9JR9 EXPRESSION TAG SEQADV 8BGZ ASN D 229 UNP A0A6L9JR9 HIS 229 ENGINEERED MUTATION SEQRES 1 A 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 A 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 A 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 A 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 A 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 A 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 A 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 A 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 A 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 A 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 A 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 A 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 A 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 A 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 A 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 A 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 A 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 A 319 LEU TYR ILE LEU LYS ASN VAL LEU ASN ASN TRP SER ASP SEQRES 19 A 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 A 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 A 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 A 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 A 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 A 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 A 319 PHE ILE LYS LEU GLN ILE LYS SEQRES 1 B 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 B 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 B 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 B 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 B 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 B 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 B 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 B 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 B 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 B 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 B 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 B 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 B 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 B 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 B 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 B 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 B 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 B 319 LEU TYR ILE LEU LYS ASN VAL LEU ASN ASN TRP SER ASP SEQRES 19 B 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 B 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 B 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 B 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 B 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 B 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 B 319 PHE ILE LYS LEU GLN ILE LYS SEQRES 1 C 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 C 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 C 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 C 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 C 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 C 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 C 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 C 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 C 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 C 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 C 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 C 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 C 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 C 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 C 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 C 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 C 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 C 319 LEU TYR ILE LEU LYS ASN VAL LEU ASN ASN TRP SER ASP SEQRES 19 C 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 C 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 C 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 C 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 C 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 C 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 C 319 PHE ILE LYS LEU GLN ILE LYS SEQRES 1 D 319 SER MET LEU THR GLU LEU ILE ALA SER ASN ARG ARG SER SEQRES 2 D 319 ALA ALA ILE HIS ALA PHE VAL ASP THR GLY LEU SER THR SEQRES 3 D 319 HIS PHE LYS ASP GLY ILE TYR VAL ASP ILE SER GLU LEU SEQRES 4 D 319 SER ARG LYS SER GLY VAL ASN TYR ALA ARG PHE SER ARG SEQRES 5 D 319 LEU CYS ASP PHE LEU VAL GLU MET GLY VAL LEU VAL SER SEQRES 6 D 319 ASN ASP ASN LYS PHE ARG LEU SER ASP GLU CYS HIS VAL SEQRES 7 D 319 PHE ALA ASN PRO GLU SER PHE GLU SER PHE MET ILE LYS SEQRES 8 D 319 LEU GLU ILE CYS SER HIS TYR SER ASN ALA TRP LEU MET SEQRES 9 D 319 TYR GLY LYS SER LEU PHE GLU ASP ASP GLY LYS SER ALA SEQRES 10 D 319 PHE GLU MET ALA HIS GLY ARG PRO PHE PHE GLU TYR LEU SEQRES 11 D 319 ASP GLY ASN LYS PHE LEU LYS SER ASN PHE ASP ALA LEU SEQRES 12 D 319 MET THR ARG VAL SER ASN LEU ILE VAL GLU LYS LEU LEU SEQRES 13 D 319 GLY ILE TYR ASP PHE ASN GLN HIS ASN ARG ILE LEU ASP SEQRES 14 D 319 VAL GLY GLY GLY GLU GLY GLU LEU LEU VAL ARG ILE SER SEQRES 15 D 319 GLU LYS VAL LYS GLY LYS HIS TYR ALA VAL LEU ASP ARG SEQRES 16 D 319 TYR SER GLU LEU PRO VAL SER ASP ASN ILE ASP PHE ILE SEQRES 17 D 319 ASN GLY ASN PHE LEU ASN SER ILE PRO SER GLY TYR ASP SEQRES 18 D 319 LEU TYR ILE LEU LYS ASN VAL LEU ASN ASN TRP SER ASP SEQRES 19 D 319 SER ASP SER ILE LEU ILE LEU GLU ASN PHE ARG LYS ALA SEQRES 20 D 319 MET ASP LYS ASN SER SER LEU LEU LEU ILE ASN MET VAL SEQRES 21 D 319 LYS GLU PRO GLU PHE SER ARG SER PHE ASP ILE LEU MET SEQRES 22 D 319 ASP VAL LEU PHE LEU GLY LYS GLU ARG SER PHE THR GLU SEQRES 23 D 319 PHE GLU TYR LEU ALA ASN GLN ALA GLY LEU VAL VAL GLN SEQRES 24 D 319 GLU THR LYS VAL ILE ASP GLN SER TYR SER PRO TYR SER SEQRES 25 D 319 PHE ILE LYS LEU GLN ILE LYS HET SAH A 401 26 HET QOI A 402 19 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET NA A 407 1 HET SAH B 401 26 HET QOI B 402 19 HET SAH C 401 26 HET QOI C 402 19 HET GOL C 403 6 HET GOL C 404 6 HET SAH D 401 26 HET QOI D 402 19 HET GOL D 403 6 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM QOI 1,3,8-TRIS(OXIDANYL)ANTHRACENE-9,10-DIONE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SAH 4(C14 H20 N6 O5 S) FORMUL 6 QOI 4(C14 H8 O5) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 11 NA NA 1+ FORMUL 21 HOH *560(H2 O) HELIX 1 AA1 SER A 0 ALA A 7 1 8 HELIX 2 AA2 SER A 8 THR A 21 1 14 HELIX 3 AA3 GLY A 22 ILE A 31 5 10 HELIX 4 AA4 ASP A 34 GLY A 43 1 10 HELIX 5 AA5 ASN A 45 MET A 59 1 15 HELIX 6 AA6 ASP A 73 ASN A 80 5 8 HELIX 7 AA7 SER A 83 ILE A 93 1 11 HELIX 8 AA8 CYS A 94 LEU A 102 1 9 HELIX 9 AA9 MET A 103 LEU A 108 1 6 HELIX 10 AB1 SER A 115 GLY A 122 1 8 HELIX 11 AB2 PRO A 124 ASP A 130 1 7 HELIX 12 AB3 ASN A 132 TYR A 158 1 27 HELIX 13 AB4 GLY A 174 VAL A 184 1 11 HELIX 14 AB5 VAL A 227 TRP A 231 5 5 HELIX 15 AB6 SER A 232 MET A 247 1 16 HELIX 16 AB7 ARG A 266 LEU A 277 1 12 HELIX 17 AB8 SER A 282 ALA A 293 1 12 HELIX 18 AB9 MET B 1 ALA B 7 1 7 HELIX 19 AC1 SER B 8 THR B 21 1 14 HELIX 20 AC2 GLY B 22 ILE B 31 5 10 HELIX 21 AC3 ASP B 34 GLY B 43 1 10 HELIX 22 AC4 ASN B 45 MET B 59 1 15 HELIX 23 AC5 ASP B 73 ASN B 80 5 8 HELIX 24 AC6 SER B 83 ILE B 93 1 11 HELIX 25 AC7 CYS B 94 LEU B 102 1 9 HELIX 26 AC8 MET B 103 LEU B 108 1 6 HELIX 27 AC9 SER B 115 GLY B 122 1 8 HELIX 28 AD1 PRO B 124 ASP B 130 1 7 HELIX 29 AD2 ASN B 132 TYR B 158 1 27 HELIX 30 AD3 GLY B 174 VAL B 184 1 11 HELIX 31 AD4 VAL B 227 TRP B 231 5 5 HELIX 32 AD5 SER B 232 MET B 247 1 16 HELIX 33 AD6 ARG B 266 LEU B 277 1 12 HELIX 34 AD7 SER B 282 ALA B 293 1 12 HELIX 35 AD8 MET C 1 ALA C 7 1 7 HELIX 36 AD9 SER C 8 THR C 21 1 14 HELIX 37 AE1 GLY C 22 ILE C 31 5 10 HELIX 38 AE2 ASP C 34 GLY C 43 1 10 HELIX 39 AE3 ASN C 45 MET C 59 1 15 HELIX 40 AE4 ASP C 73 ASN C 80 5 8 HELIX 41 AE5 SER C 83 ILE C 93 1 11 HELIX 42 AE6 CYS C 94 MET C 103 1 10 HELIX 43 AE7 MET C 103 LEU C 108 1 6 HELIX 44 AE8 SER C 115 GLY C 122 1 8 HELIX 45 AE9 PRO C 124 ASP C 130 1 7 HELIX 46 AF1 ASN C 132 TYR C 158 1 27 HELIX 47 AF2 GLY C 174 VAL C 184 1 11 HELIX 48 AF3 VAL C 227 TRP C 231 5 5 HELIX 49 AF4 SER C 232 MET C 247 1 16 HELIX 50 AF5 ARG C 266 LEU C 277 1 12 HELIX 51 AF6 SER C 282 ALA C 293 1 12 HELIX 52 AF7 MET D 1 ALA D 7 1 7 HELIX 53 AF8 SER D 8 THR D 21 1 14 HELIX 54 AF9 GLY D 22 ILE D 31 5 10 HELIX 55 AG1 ASP D 34 GLY D 43 1 10 HELIX 56 AG2 ASN D 45 MET D 59 1 15 HELIX 57 AG3 ASP D 73 ASN D 80 5 8 HELIX 58 AG4 SER D 83 ILE D 93 1 11 HELIX 59 AG5 CYS D 94 LEU D 102 1 9 HELIX 60 AG6 MET D 103 LEU D 108 1 6 HELIX 61 AG7 SER D 115 GLY D 122 1 8 HELIX 62 AG8 PRO D 124 ASP D 130 1 7 HELIX 63 AG9 ASN D 132 TYR D 158 1 27 HELIX 64 AH1 GLY D 174 VAL D 184 1 11 HELIX 65 AH2 VAL D 227 TRP D 231 5 5 HELIX 66 AH3 SER D 232 MET D 247 1 16 HELIX 67 AH4 ARG D 266 LEU D 277 1 12 HELIX 68 AH5 SER D 282 ALA D 293 1 12 SHEET 1 AA1 2 LEU A 62 ASN A 65 0 SHEET 2 AA1 2 LYS A 68 LEU A 71 -1 O ARG A 70 N VAL A 63 SHEET 1 AA2 7 ASP A 205 ASN A 208 0 SHEET 2 AA2 7 HIS A 188 ASP A 193 1 N VAL A 191 O ILE A 207 SHEET 3 AA2 7 ARG A 165 VAL A 169 1 N ILE A 166 O HIS A 188 SHEET 4 AA2 7 LEU A 221 LYS A 225 1 O ILE A 223 N VAL A 169 SHEET 5 AA2 7 SER A 252 MET A 258 1 O LEU A 254 N TYR A 222 SHEET 6 AA2 7 PRO A 309 ILE A 317 -1 O SER A 311 N ASN A 257 SHEET 7 AA2 7 LEU A 295 ASP A 304 -1 N LYS A 301 O PHE A 312 SHEET 1 AA3 2 LEU B 62 ASN B 65 0 SHEET 2 AA3 2 LYS B 68 LEU B 71 -1 O ARG B 70 N VAL B 63 SHEET 1 AA4 7 ILE B 204 ASN B 208 0 SHEET 2 AA4 7 HIS B 188 ASP B 193 1 N TYR B 189 O ASP B 205 SHEET 3 AA4 7 ARG B 165 VAL B 169 1 N ILE B 166 O HIS B 188 SHEET 4 AA4 7 LEU B 221 LYS B 225 1 O ILE B 223 N VAL B 169 SHEET 5 AA4 7 SER B 252 MET B 258 1 O LEU B 254 N TYR B 222 SHEET 6 AA4 7 PRO B 309 ILE B 317 -1 O SER B 311 N ASN B 257 SHEET 7 AA4 7 LEU B 295 ASP B 304 -1 N VAL B 296 O GLN B 316 SHEET 1 AA5 2 LEU C 62 ASN C 65 0 SHEET 2 AA5 2 LYS C 68 LEU C 71 -1 O ARG C 70 N VAL C 63 SHEET 1 AA6 7 ASP C 205 ASN C 208 0 SHEET 2 AA6 7 HIS C 188 ASP C 193 1 N VAL C 191 O ILE C 207 SHEET 3 AA6 7 ARG C 165 VAL C 169 1 N ILE C 166 O HIS C 188 SHEET 4 AA6 7 LEU C 221 LYS C 225 1 O ILE C 223 N VAL C 169 SHEET 5 AA6 7 SER C 252 MET C 258 1 O LEU C 254 N TYR C 222 SHEET 6 AA6 7 SER C 308 ILE C 317 -1 O SER C 311 N ASN C 257 SHEET 7 AA6 7 LEU C 295 GLN C 305 -1 N LYS C 301 O PHE C 312 SHEET 1 AA7 2 LEU D 62 ASN D 65 0 SHEET 2 AA7 2 LYS D 68 LEU D 71 -1 O ARG D 70 N VAL D 63 SHEET 1 AA8 7 ASP D 205 ASN D 208 0 SHEET 2 AA8 7 HIS D 188 ASP D 193 1 N VAL D 191 O ILE D 207 SHEET 3 AA8 7 ARG D 165 VAL D 169 1 N ILE D 166 O HIS D 188 SHEET 4 AA8 7 LEU D 221 LYS D 225 1 O ILE D 223 N VAL D 169 SHEET 5 AA8 7 SER D 252 MET D 258 1 O LEU D 254 N TYR D 222 SHEET 6 AA8 7 PRO D 309 ILE D 317 -1 O SER D 311 N ASN D 257 SHEET 7 AA8 7 LEU D 295 ASP D 304 -1 N LYS D 301 O PHE D 312 LINK OD1 ASP A 66 NA NA A 407 1555 1555 2.49 LINK O TYR A 128 NA NA A 407 1555 2445 2.60 LINK NA NA A 407 O HOH A 604 1555 1555 3.06 CRYST1 63.350 77.590 167.600 90.00 95.27 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015785 0.000000 0.001455 0.00000 SCALE2 0.000000 0.012888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005992 0.00000