HEADER ELECTRON TRANSPORT 01-NOV-22 8BHX TITLE HIGH RESOLUTION STRUCTURE OF THE IRON SUPEROXIDE DISMUTASE FROM TITLE 2 THERMOBIFIDA FUSCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 2021; SOURCE 4 STRAIN: YX; SOURCE 5 GENE: TFU_0957; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR (DE3) CELLS KEYWDS IRON SUPEROXIDE DISMUTASE, SOD, THERMOBIFIDA FUSCA, THERMOPHILIC KEYWDS 2 BACTERIA, REACTIVE OXYGEN SPECIES (ROS)., ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.-K.S.LEIROS,M.SORLIE REVDAT 2 04-OCT-23 8BHX 1 JRNL REVDAT 1 27-SEP-23 8BHX 0 JRNL AUTH A.G.HAMRE,R.AL-SADAWI,K.M.JOHANNESEN,B.BISARRO, JRNL AUTH 2 A.R.KJENDSETH,H.S.LEIROS,M.SORLIE JRNL TITL INITIAL CHARACTERIZATION OF AN IRON SUPEROXIDE DISMUTASE JRNL TITL 2 FROM THERMOBIFIDA FUSCA. JRNL REF J.BIOL.INORG.CHEM. V. 28 689 2023 JRNL REFN ESSN 1432-1327 JRNL PMID 37725277 JRNL DOI 10.1007/S00775-023-02019-9 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 107986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6500 - 3.0800 1.00 7512 150 0.1158 0.1272 REMARK 3 2 3.0800 - 2.4500 1.00 7291 129 0.1082 0.1413 REMARK 3 3 2.4500 - 2.1400 1.00 7199 148 0.1012 0.1133 REMARK 3 4 2.1400 - 1.9400 1.00 7185 132 0.1046 0.1232 REMARK 3 5 1.9400 - 1.8000 1.00 7156 137 0.1123 0.1353 REMARK 3 6 1.8000 - 1.7000 1.00 7139 127 0.1105 0.1386 REMARK 3 7 1.7000 - 1.6100 1.00 7109 137 0.1168 0.1476 REMARK 3 8 1.6100 - 1.5400 1.00 7065 164 0.1204 0.1324 REMARK 3 9 1.5400 - 1.4800 1.00 7113 138 0.1340 0.1632 REMARK 3 10 1.4800 - 1.4300 1.00 7070 144 0.1469 0.1723 REMARK 3 11 1.4300 - 1.3900 1.00 7091 137 0.1594 0.1512 REMARK 3 12 1.3900 - 1.3500 1.00 7062 128 0.1842 0.2174 REMARK 3 13 1.3500 - 1.3100 0.99 6983 150 0.2235 0.2301 REMARK 3 14 1.3100 - 1.2800 0.95 6713 143 0.2547 0.2669 REMARK 3 15 1.2800 - 1.2500 0.88 6190 144 0.2806 0.2908 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.115 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.486 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3530 REMARK 3 ANGLE : 1.133 4828 REMARK 3 CHIRALITY : 0.086 487 REMARK 3 PLANARITY : 0.007 644 REMARK 3 DIHEDRAL : 12.951 480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 204) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1810 4.3108 89.2900 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.1134 REMARK 3 T33: 0.0568 T12: -0.0103 REMARK 3 T13: -0.0062 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.9168 L22: 0.4508 REMARK 3 L33: 0.4520 L12: -0.0007 REMARK 3 L13: -0.0790 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.2054 S13: 0.0218 REMARK 3 S21: 0.0576 S22: -0.0192 S23: -0.0309 REMARK 3 S31: 0.0108 S32: 0.0425 S33: 0.0143 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 204) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6665 7.0586 60.0975 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0540 REMARK 3 T33: 0.0665 T12: -0.0089 REMARK 3 T13: 0.0055 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5574 L22: 0.4775 REMARK 3 L33: 0.3394 L12: 0.1006 REMARK 3 L13: 0.0062 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.0389 S13: 0.0094 REMARK 3 S21: -0.0350 S22: 0.0241 S23: -0.0210 REMARK 3 S31: -0.0216 S32: 0.0161 S33: -0.0028 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.03310 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34750 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BSM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 1500 AND 0.1 M SODIUM REMARK 280 MALONATE DIBASIC MONOHYDRATE, IMIDAZOLE AND BORIC ACID BUFFER AT REMARK 280 PH 8.0, FROM A PACT PREMIER SCREEN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.30500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 590 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 93 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 91 O HOH B 401 1.32 REMARK 500 HZ1 LYS B 91 O HOH B 401 1.47 REMARK 500 HE22 GLN A 47 O HOH A 407 1.49 REMARK 500 HH22 ARG B 194 O HOH B 410 1.49 REMARK 500 HZ1 LYS B 91 O HOH B 406 1.50 REMARK 500 HH12 ARG B 194 O HOH B 402 1.51 REMARK 500 HH12 ARG B 194 O HOH B 402 1.55 REMARK 500 H GLY B 204 O HOH B 413 1.57 REMARK 500 HE3 LYS A 193 O HOH A 419 1.57 REMARK 500 HB3 ASP B 108 O HOH B 649 1.58 REMARK 500 HZ1 LYS A 200 O HOH A 402 1.60 REMARK 500 HZ1 LYS A 65 O HOH A 414 1.60 REMARK 500 HZ3 LYS A 65 O HOH A 403 1.60 REMARK 500 NZ LYS B 91 O HOH B 401 1.64 REMARK 500 O HOH A 542 O HOH A 627 1.74 REMARK 500 O HOH A 431 O HOH A 593 1.77 REMARK 500 O HOH B 525 O HOH B 677 1.80 REMARK 500 O HOH A 547 O HOH A 555 1.83 REMARK 500 O HOH B 407 O HOH B 455 1.83 REMARK 500 O HOH A 547 O HOH A 566 1.84 REMARK 500 O HOH A 405 O HOH A 498 1.85 REMARK 500 O HOH A 521 O HOH A 551 1.87 REMARK 500 O HOH B 633 O HOH B 660 1.88 REMARK 500 O HOH B 477 O HOH B 639 1.90 REMARK 500 O HOH A 411 O HOH A 467 1.91 REMARK 500 O HOH A 542 O HOH B 620 1.92 REMARK 500 CE LYS A 193 O HOH A 419 1.93 REMARK 500 O HOH B 642 O HOH B 651 1.94 REMARK 500 O HOH A 439 O HOH A 475 1.95 REMARK 500 O HOH B 492 O HOH B 646 1.96 REMARK 500 NZ LYS A 200 O HOH A 402 1.98 REMARK 500 NH1 ARG B 194 O HOH B 402 2.00 REMARK 500 O HOH B 717 O HOH B 791 2.01 REMARK 500 NH2 ARG B 194 O HOH B 404 2.02 REMARK 500 O HOH B 430 O HOH B 740 2.02 REMARK 500 O HOH A 407 O HOH A 603 2.04 REMARK 500 O HOH B 664 O HOH B 679 2.04 REMARK 500 NZ LYS A 65 O HOH A 403 2.04 REMARK 500 O HOH B 739 O HOH B 758 2.05 REMARK 500 O HOH B 566 O HOH B 625 2.06 REMARK 500 OD1 ASP B 87 O HOH B 405 2.07 REMARK 500 O HOH B 764 O HOH B 785 2.07 REMARK 500 OD2 ASP B 108 O HOH B 406 2.08 REMARK 500 OH TYR B 37 O HOH B 407 2.08 REMARK 500 O HOH B 802 O HOH B 807 2.10 REMARK 500 OE1 GLU A 18 O HOH A 404 2.11 REMARK 500 NH1 ARG B 194 O HOH B 402 2.12 REMARK 500 OH TYR A 37 O HOH A 405 2.14 REMARK 500 O HOH A 576 O HOH B 700 2.15 REMARK 500 CB ASP B 108 O HOH B 649 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 54 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH B 586 2556 1.81 REMARK 500 O HOH B 440 O HOH B 586 2555 1.83 REMARK 500 O HOH A 607 O HOH B 427 3547 1.96 REMARK 500 O HOH A 696 O HOH B 802 3547 2.00 REMARK 500 O HOH B 410 O HOH B 437 2555 2.02 REMARK 500 O HOH A 579 O HOH A 698 2555 2.02 REMARK 500 O HOH A 415 O HOH B 633 2555 2.04 REMARK 500 O HOH A 668 O HOH B 622 3557 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 95 CD GLU A 95 OE2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 -122.69 72.61 REMARK 500 ASP A 145 -119.14 57.18 REMARK 500 PHE A 167 -16.51 -141.65 REMARK 500 LYS A 172 -135.81 56.46 REMARK 500 LYS A 172 -135.76 56.88 REMARK 500 ASP B 90 -141.30 65.81 REMARK 500 ASP B 145 -118.82 54.20 REMARK 500 PHE B 167 -15.41 -142.10 REMARK 500 LYS B 172 -136.50 55.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 734 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 736 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 811 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 812 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 813 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 814 DISTANCE = 6.61 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 29 NE2 REMARK 620 2 HIS A 77 NE2 91.5 REMARK 620 3 ASP A 161 OD2 83.3 100.7 REMARK 620 4 HIS A 165 NE2 90.8 144.6 114.7 REMARK 620 5 HOH A 421 O 98.1 72.9 173.4 71.8 REMARK 620 6 HOH A 533 O 171.1 93.1 88.3 89.8 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 29 NE2 REMARK 620 2 HIS B 77 NE2 89.5 REMARK 620 3 ASP B 161 OD2 83.8 99.8 REMARK 620 4 HIS B 165 NE2 91.8 148.3 111.9 REMARK 620 5 HOH B 433 O 97.2 73.8 173.4 74.7 REMARK 620 6 HOH B 553 O 171.3 94.7 88.0 88.6 91.2 REMARK 620 N 1 2 3 4 5 DBREF 8BHX A 1 204 UNP Q47RC2 Q47RC2_THEFY 1 204 DBREF 8BHX B 1 204 UNP Q47RC2 Q47RC2_THEFY 1 204 SEQRES 1 A 204 MET SER ALA PRO TYR THR LEU PRO GLU LEU PRO TYR ASP SEQRES 2 A 204 TYR SER ALA LEU GLU PRO TRP ILE SER GLY GLU ILE MET SEQRES 3 A 204 GLU LEU HIS HIS ASP LYS HIS HIS ALA ALA TYR VAL LYS SEQRES 4 A 204 GLY ALA ASN ASP ALA LEU GLU GLN LEU ALA GLU ALA ARG SEQRES 5 A 204 GLU LYS GLY ASP LEU SER LYS VAL ASN LEU LEU GLN LYS SEQRES 6 A 204 ASN LEU ALA PHE ASN LEU ALA GLY HIS VAL ASN HIS THR SEQRES 7 A 204 VAL PHE TRP PRO ASN LEU SER PRO ASP GLY GLY ASP LYS SEQRES 8 A 204 PRO GLU GLY GLU LEU GLY ALA ALA ILE ASP ASP ALA PHE SEQRES 9 A 204 GLY SER PHE ASP ALA PHE ARG ALA HIS PHE SER ALA ALA SEQRES 10 A 204 ALA THR GLY ILE GLN GLY SER GLY TRP ALA ILE LEU ALA SEQRES 11 A 204 TRP ASP ILE LEU GLY GLN ARG LEU ILE ILE GLU GLN LEU SEQRES 12 A 204 TYR ASP HIS GLN GLY ASN LEU ALA ALA GLY SER TYR PRO SEQRES 13 A 204 LEU LEU MET LEU ASP MET TRP GLU HIS ALA PHE TYR LEU SEQRES 14 A 204 GLN TYR LYS ASN VAL LYS ALA ASP TYR VAL LYS ALA PHE SEQRES 15 A 204 TRP ASN VAL VAL ASN TRP ALA ASP VAL ALA LYS ARG PHE SEQRES 16 A 204 GLU ASP ALA ARG LYS VAL ALA LEU GLY SEQRES 1 B 204 MET SER ALA PRO TYR THR LEU PRO GLU LEU PRO TYR ASP SEQRES 2 B 204 TYR SER ALA LEU GLU PRO TRP ILE SER GLY GLU ILE MET SEQRES 3 B 204 GLU LEU HIS HIS ASP LYS HIS HIS ALA ALA TYR VAL LYS SEQRES 4 B 204 GLY ALA ASN ASP ALA LEU GLU GLN LEU ALA GLU ALA ARG SEQRES 5 B 204 GLU LYS GLY ASP LEU SER LYS VAL ASN LEU LEU GLN LYS SEQRES 6 B 204 ASN LEU ALA PHE ASN LEU ALA GLY HIS VAL ASN HIS THR SEQRES 7 B 204 VAL PHE TRP PRO ASN LEU SER PRO ASP GLY GLY ASP LYS SEQRES 8 B 204 PRO GLU GLY GLU LEU GLY ALA ALA ILE ASP ASP ALA PHE SEQRES 9 B 204 GLY SER PHE ASP ALA PHE ARG ALA HIS PHE SER ALA ALA SEQRES 10 B 204 ALA THR GLY ILE GLN GLY SER GLY TRP ALA ILE LEU ALA SEQRES 11 B 204 TRP ASP ILE LEU GLY GLN ARG LEU ILE ILE GLU GLN LEU SEQRES 12 B 204 TYR ASP HIS GLN GLY ASN LEU ALA ALA GLY SER TYR PRO SEQRES 13 B 204 LEU LEU MET LEU ASP MET TRP GLU HIS ALA PHE TYR LEU SEQRES 14 B 204 GLN TYR LYS ASN VAL LYS ALA ASP TYR VAL LYS ALA PHE SEQRES 15 B 204 TRP ASN VAL VAL ASN TRP ALA ASP VAL ALA LYS ARG PHE SEQRES 16 B 204 GLU ASP ALA ARG LYS VAL ALA LEU GLY HET FE A 301 1 HET FE B 301 1 HET BO3 B 302 7 HETNAM FE FE (III) ION HETNAM BO3 BORIC ACID FORMUL 3 FE 2(FE 3+) FORMUL 5 BO3 B H3 O3 FORMUL 6 HOH *753(H2 O) HELIX 1 AA1 SER A 22 LYS A 32 1 11 HELIX 2 AA2 LYS A 32 GLY A 55 1 24 HELIX 3 AA3 ASP A 56 SER A 58 5 3 HELIX 4 AA4 LYS A 59 TRP A 81 1 23 HELIX 5 AA5 GLU A 93 GLY A 105 1 13 HELIX 6 AA6 SER A 106 GLY A 120 1 15 HELIX 7 AA7 TRP A 163 ALA A 166 5 4 HELIX 8 AA8 PHE A 167 LYS A 172 1 6 HELIX 9 AA9 VAL A 174 TRP A 183 1 10 HELIX 10 AB1 ASN A 184 VAL A 186 5 3 HELIX 11 AB2 ASN A 187 ARG A 199 1 13 HELIX 12 AB3 SER B 22 LYS B 32 1 11 HELIX 13 AB4 LYS B 32 GLY B 55 1 24 HELIX 14 AB5 LYS B 59 TRP B 81 1 23 HELIX 15 AB6 GLU B 93 GLY B 105 1 13 HELIX 16 AB7 SER B 106 ILE B 121 1 16 HELIX 17 AB8 TRP B 163 ALA B 166 5 4 HELIX 18 AB9 PHE B 167 LYS B 172 1 6 HELIX 19 AC1 VAL B 174 TRP B 183 1 10 HELIX 20 AC2 ASN B 184 VAL B 186 5 3 HELIX 21 AC3 ASN B 187 ARG B 199 1 13 SHEET 1 AA1 3 ARG A 137 TYR A 144 0 SHEET 2 AA1 3 GLY A 125 ASP A 132 -1 N ALA A 130 O ILE A 139 SHEET 3 AA1 3 TYR A 155 ASP A 161 -1 O LEU A 157 N LEU A 129 SHEET 1 AA2 3 ARG B 137 TYR B 144 0 SHEET 2 AA2 3 GLY B 125 ASP B 132 -1 N ALA B 130 O ILE B 139 SHEET 3 AA2 3 TYR B 155 ASP B 161 -1 O LEU B 157 N LEU B 129 LINK NE2 HIS A 29 FE FE A 301 1555 1555 2.16 LINK NE2 HIS A 77 FE FE A 301 1555 1555 2.15 LINK OD2 ASP A 161 FE FE A 301 1555 1555 2.03 LINK NE2 HIS A 165 FE FE A 301 1555 1555 2.19 LINK FE FE A 301 O HOH A 421 1555 1555 2.20 LINK FE FE A 301 O HOH A 533 1555 1555 2.05 LINK NE2 HIS B 29 FE FE B 301 1555 1555 2.16 LINK NE2 HIS B 77 FE FE B 301 1555 1555 2.17 LINK OD2 ASP B 161 FE FE B 301 1555 1555 2.03 LINK NE2 HIS B 165 FE FE B 301 1555 1555 2.20 LINK FE FE B 301 O HOH B 433 1555 1555 2.13 LINK FE FE B 301 O HOH B 553 1555 1555 2.06 CISPEP 1 GLU A 18 PRO A 19 0 5.22 CISPEP 2 GLU A 18 PRO A 19 0 9.66 CISPEP 3 GLU B 18 PRO B 19 0 2.77 CISPEP 4 GLU B 18 PRO B 19 0 5.88 CRYST1 98.610 58.590 67.940 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014719 0.00000