HEADER HYDROLASE 09-NOV-22 8BL1 TITLE HUMAN SIRT6 IN COMPLEX WITH THE INHIBITOR S6039 AND ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 6,SIR2-LIKE PROTEIN 6; COMPND 5 EC: 2.3.1.286; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT6, SIR2L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151-D-TOPO KEYWDS DEACYLASE, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YOU,C.STEEGBORN REVDAT 2 04-MAR-26 8BL1 1 COMPND HETNAM REVDAT 1 22-NOV-23 8BL1 0 JRNL AUTH W.YOU,C.STEEGBORN JRNL TITL DEVELOPMENT OF NOVEL SIRTUIN 6 INHIBITORS AND ACTIVATORS JRNL TITL 2 BASED ON A PROTEIN CRYSTALLOGRAPHY-BASED FRAGMENT SCREEN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 40481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 197 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.41000 REMARK 3 B22 (A**2) : -15.41000 REMARK 3 B33 (A**2) : 30.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4650 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4406 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6330 ; 1.629 ; 1.674 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10151 ; 1.239 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 6.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;32.737 ;19.876 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 764 ;14.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;20.412 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5047 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1035 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 15 A 297 1 REMARK 3 1 B 15 B 297 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 2145 ; 5.790 ; 0.500 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.388 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8BL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7-6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 45.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MF6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M (NH4)2SO4, 10% PEG 400, AND BIS REMARK 280 -TRIS BUFFER PH 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.17500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.17500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.17500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 ILE A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 170 REMARK 465 ALA A 171 REMARK 465 ARG A 172 REMARK 465 GLY A 173 REMARK 465 LEU A 174 REMARK 465 ARG A 175 REMARK 465 ALA A 176 REMARK 465 PRO A 299 REMARK 465 LYS A 300 REMARK 465 GLU A 301 REMARK 465 GLU A 302 REMARK 465 SER A 303 REMARK 465 PRO A 304 REMARK 465 THR A 305 REMARK 465 ARG A 306 REMARK 465 ILE A 307 REMARK 465 ASN A 308 REMARK 465 GLY B 7 REMARK 465 ILE B 8 REMARK 465 ASP B 9 REMARK 465 PRO B 10 REMARK 465 PHE B 11 REMARK 465 THR B 12 REMARK 465 ALA B 13 REMARK 465 ASP B 14 REMARK 465 LYS B 170 REMARK 465 ALA B 171 REMARK 465 ARG B 172 REMARK 465 GLY B 173 REMARK 465 LEU B 174 REMARK 465 ARG B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 299 REMARK 465 LYS B 300 REMARK 465 GLU B 301 REMARK 465 GLU B 302 REMARK 465 SER B 303 REMARK 465 PRO B 304 REMARK 465 THR B 305 REMARK 465 ARG B 306 REMARK 465 ILE B 307 REMARK 465 ASN B 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ARG B 231 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 264 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 253 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 264 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 124.23 -37.66 REMARK 500 ASP A 63 -169.98 -78.10 REMARK 500 LYS A 143 -70.49 -89.51 REMARK 500 ARG A 178 18.61 55.83 REMARK 500 ARG A 232 30.49 72.21 REMARK 500 ASN A 240 135.18 -174.80 REMARK 500 LEU A 297 -74.96 -97.59 REMARK 500 LYS B 143 -76.16 -89.69 REMARK 500 ARG B 232 32.72 72.92 REMARK 500 LEU B 297 -64.87 -101.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 141 SG REMARK 620 2 CYS A 144 SG 103.9 REMARK 620 3 CYS A 166 SG 106.2 106.3 REMARK 620 4 CYS A 177 SG 97.9 127.3 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 141 SG REMARK 620 2 CYS B 144 SG 103.4 REMARK 620 3 CYS B 166 SG 119.5 97.2 REMARK 620 4 CYS B 177 SG 109.6 117.4 109.6 REMARK 620 N 1 2 3 DBREF 8BL1 A 13 308 UNP Q8N6T7 SIR6_HUMAN 13 308 DBREF 8BL1 B 13 308 UNP Q8N6T7 SIR6_HUMAN 13 308 SEQADV 8BL1 GLY A 7 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 ILE A 8 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 ASP A 9 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 PRO A 10 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 PHE A 11 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 THR A 12 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 GLY B 7 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 ILE B 8 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 ASP B 9 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 PRO B 10 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 PHE B 11 UNP Q8N6T7 EXPRESSION TAG SEQADV 8BL1 THR B 12 UNP Q8N6T7 EXPRESSION TAG SEQRES 1 A 302 GLY ILE ASP PRO PHE THR ALA ASP LYS GLY LYS CYS GLY SEQRES 2 A 302 LEU PRO GLU ILE PHE ASP PRO PRO GLU GLU LEU GLU ARG SEQRES 3 A 302 LYS VAL TRP GLU LEU ALA ARG LEU VAL TRP GLN SER SER SEQRES 4 A 302 SER VAL VAL PHE HIS THR GLY ALA GLY ILE SER THR ALA SEQRES 5 A 302 SER GLY ILE PRO ASP PHE ARG GLY PRO HIS GLY VAL TRP SEQRES 6 A 302 THR MET GLU GLU ARG GLY LEU ALA PRO LYS PHE ASP THR SEQRES 7 A 302 THR PHE GLU SER ALA ARG PRO THR GLN THR HIS MET ALA SEQRES 8 A 302 LEU VAL GLN LEU GLU ARG VAL GLY LEU LEU ARG PHE LEU SEQRES 9 A 302 VAL SER GLN ASN VAL ASP GLY LEU HIS VAL ARG SER GLY SEQRES 10 A 302 PHE PRO ARG ASP LYS LEU ALA GLU LEU HIS GLY ASN MET SEQRES 11 A 302 PHE VAL GLU GLU CYS ALA LYS CYS LYS THR GLN TYR VAL SEQRES 12 A 302 ARG ASP THR VAL VAL GLY THR MET GLY LEU LYS ALA THR SEQRES 13 A 302 GLY ARG LEU CYS THR VAL ALA LYS ALA ARG GLY LEU ARG SEQRES 14 A 302 ALA CYS ARG GLY GLU LEU ARG ASP THR ILE LEU ASP TRP SEQRES 15 A 302 GLU ASP SER LEU PRO ASP ARG ASP LEU ALA LEU ALA ASP SEQRES 16 A 302 GLU ALA SER ARG ASN ALA ASP LEU SER ILE THR LEU GLY SEQRES 17 A 302 THR SER LEU GLN ILE ARG PRO SER GLY ASN LEU PRO LEU SEQRES 18 A 302 ALA THR LYS ARG ARG GLY GLY ARG LEU VAL ILE VAL ASN SEQRES 19 A 302 LEU GLN PRO THR LYS HIS ASP ARG HIS ALA ASP LEU ARG SEQRES 20 A 302 ILE HIS GLY TYR VAL ASP GLU VAL MET THR ARG LEU MET SEQRES 21 A 302 LYS HIS LEU GLY LEU GLU ILE PRO ALA TRP ASP GLY PRO SEQRES 22 A 302 ARG VAL LEU GLU ARG ALA LEU PRO PRO LEU PRO ARG PRO SEQRES 23 A 302 PRO THR PRO LYS LEU GLU PRO LYS GLU GLU SER PRO THR SEQRES 24 A 302 ARG ILE ASN SEQRES 1 B 302 GLY ILE ASP PRO PHE THR ALA ASP LYS GLY LYS CYS GLY SEQRES 2 B 302 LEU PRO GLU ILE PHE ASP PRO PRO GLU GLU LEU GLU ARG SEQRES 3 B 302 LYS VAL TRP GLU LEU ALA ARG LEU VAL TRP GLN SER SER SEQRES 4 B 302 SER VAL VAL PHE HIS THR GLY ALA GLY ILE SER THR ALA SEQRES 5 B 302 SER GLY ILE PRO ASP PHE ARG GLY PRO HIS GLY VAL TRP SEQRES 6 B 302 THR MET GLU GLU ARG GLY LEU ALA PRO LYS PHE ASP THR SEQRES 7 B 302 THR PHE GLU SER ALA ARG PRO THR GLN THR HIS MET ALA SEQRES 8 B 302 LEU VAL GLN LEU GLU ARG VAL GLY LEU LEU ARG PHE LEU SEQRES 9 B 302 VAL SER GLN ASN VAL ASP GLY LEU HIS VAL ARG SER GLY SEQRES 10 B 302 PHE PRO ARG ASP LYS LEU ALA GLU LEU HIS GLY ASN MET SEQRES 11 B 302 PHE VAL GLU GLU CYS ALA LYS CYS LYS THR GLN TYR VAL SEQRES 12 B 302 ARG ASP THR VAL VAL GLY THR MET GLY LEU LYS ALA THR SEQRES 13 B 302 GLY ARG LEU CYS THR VAL ALA LYS ALA ARG GLY LEU ARG SEQRES 14 B 302 ALA CYS ARG GLY GLU LEU ARG ASP THR ILE LEU ASP TRP SEQRES 15 B 302 GLU ASP SER LEU PRO ASP ARG ASP LEU ALA LEU ALA ASP SEQRES 16 B 302 GLU ALA SER ARG ASN ALA ASP LEU SER ILE THR LEU GLY SEQRES 17 B 302 THR SER LEU GLN ILE ARG PRO SER GLY ASN LEU PRO LEU SEQRES 18 B 302 ALA THR LYS ARG ARG GLY GLY ARG LEU VAL ILE VAL ASN SEQRES 19 B 302 LEU GLN PRO THR LYS HIS ASP ARG HIS ALA ASP LEU ARG SEQRES 20 B 302 ILE HIS GLY TYR VAL ASP GLU VAL MET THR ARG LEU MET SEQRES 21 B 302 LYS HIS LEU GLY LEU GLU ILE PRO ALA TRP ASP GLY PRO SEQRES 22 B 302 ARG VAL LEU GLU ARG ALA LEU PRO PRO LEU PRO ARG PRO SEQRES 23 B 302 PRO THR PRO LYS LEU GLU PRO LYS GLU GLU SER PRO THR SEQRES 24 B 302 ARG ILE ASN HET AR6 A 401 36 HET ZN A 402 1 HET QY3 A 403 33 HET PEG A 404 7 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET CL A 409 1 HET CL A 410 1 HET AR6 B 401 36 HET ZN B 402 1 HET PEG B 403 7 HET QY3 B 404 33 HET SO4 B 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HET CL B 409 1 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM ZN ZINC ION HETNAM QY3 2-AZANYL-5-[4-[[5-(2-FLUOROPHENYL)THIOPHEN-2- HETNAM 2 QY3 YL]METHYL]PIPERAZIN-1-YL]SULFONYL-BENZENESULFONAMIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 AR6 2(C15 H23 N5 O14 P2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 QY3 2(C21 H23 F N4 O4 S3) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 7 SO4 8(O4 S 2-) FORMUL 11 CL 3(CL 1-) FORMUL 22 HOH *77(H2 O) HELIX 1 AA1 PRO A 26 SER A 44 1 19 HELIX 2 AA2 ALA A 53 GLY A 60 5 8 HELIX 3 AA3 GLY A 69 ARG A 76 1 8 HELIX 4 AA4 THR A 92 VAL A 104 1 13 HELIX 5 AA5 GLY A 117 SER A 122 1 6 HELIX 6 AA6 PRO A 125 ASP A 127 5 3 HELIX 7 AA7 PRO A 193 ALA A 207 1 15 HELIX 8 AA8 PRO A 221 GLY A 223 5 3 HELIX 9 AA9 ASN A 224 THR A 229 1 6 HELIX 10 AB1 HIS A 246 ALA A 250 5 5 HELIX 11 AB2 TYR A 257 LEU A 269 1 13 HELIX 12 AB3 PRO B 26 SER B 44 1 19 HELIX 13 AB4 ALA B 53 GLY B 60 5 8 HELIX 14 AB5 GLY B 69 ARG B 76 1 8 HELIX 15 AB6 THR B 92 VAL B 104 1 13 HELIX 16 AB7 GLY B 117 ARG B 121 1 5 HELIX 17 AB8 PRO B 193 ALA B 207 1 15 HELIX 18 AB9 PRO B 221 GLY B 223 5 3 HELIX 19 AC1 ASN B 224 ARG B 231 1 8 HELIX 20 AC2 HIS B 246 ALA B 250 5 5 HELIX 21 AC3 TYR B 257 GLY B 270 1 14 SHEET 1 AA1 6 LEU A 129 GLU A 131 0 SHEET 2 AA1 6 PHE A 109 SER A 112 1 N SER A 112 O ALA A 130 SHEET 3 AA1 6 VAL A 47 THR A 51 1 N PHE A 49 O VAL A 111 SHEET 4 AA1 6 LEU A 209 LEU A 213 1 O LEU A 209 N VAL A 48 SHEET 5 AA1 6 ARG A 235 VAL A 239 1 O VAL A 237 N THR A 212 SHEET 6 AA1 6 LEU A 252 ILE A 254 1 O LEU A 252 N ILE A 238 SHEET 1 AA2 4 GLN A 147 VAL A 149 0 SHEET 2 AA2 4 VAL A 138 CYS A 141 -1 N GLU A 139 O TYR A 148 SHEET 3 AA2 4 GLU A 180 ASP A 183 -1 O ARG A 182 N GLU A 140 SHEET 4 AA2 4 ALA A 161 LEU A 165 -1 N ARG A 164 O LEU A 181 SHEET 1 AA3 6 LEU B 129 GLU B 131 0 SHEET 2 AA3 6 PHE B 109 SER B 112 1 N SER B 112 O ALA B 130 SHEET 3 AA3 6 VAL B 47 THR B 51 1 N PHE B 49 O VAL B 111 SHEET 4 AA3 6 LEU B 209 LEU B 213 1 O LEU B 213 N HIS B 50 SHEET 5 AA3 6 ARG B 235 VAL B 239 1 O VAL B 237 N THR B 212 SHEET 6 AA3 6 LEU B 252 ILE B 254 1 O LEU B 252 N ILE B 238 SHEET 1 AA4 2 SER B 122 PRO B 125 0 SHEET 2 AA4 2 ARG B 280 LEU B 282 1 N ARG B 280 O GLY B 123 SHEET 1 AA5 4 GLN B 147 VAL B 149 0 SHEET 2 AA5 4 VAL B 138 CYS B 141 -1 N GLU B 139 O TYR B 148 SHEET 3 AA5 4 GLU B 180 ASP B 183 -1 O ARG B 182 N GLU B 140 SHEET 4 AA5 4 ALA B 161 LEU B 165 -1 N ARG B 164 O LEU B 181 LINK SG CYS A 141 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 144 ZN ZN A 402 1555 1555 2.21 LINK SG CYS A 166 ZN ZN A 402 1555 1555 2.25 LINK SG CYS A 177 ZN ZN A 402 1555 1555 2.42 LINK SG CYS B 141 ZN ZN B 402 1555 1555 2.15 LINK SG CYS B 144 ZN ZN B 402 1555 1555 2.34 LINK SG CYS B 166 ZN ZN B 402 1555 1555 2.41 LINK SG CYS B 177 ZN ZN B 402 1555 1555 2.43 CISPEP 1 ARG A 220 PRO A 221 0 -6.90 CISPEP 2 ARG B 220 PRO B 221 0 -6.98 CRYST1 91.688 91.688 144.350 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010907 0.006297 0.000000 0.00000 SCALE2 0.000000 0.012594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006928 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.347833 -0.937529 0.007232 -0.23213 1 MTRIX2 2 -0.937521 -0.347877 -0.006014 0.30377 1 MTRIX3 2 0.008154 -0.004688 -0.999956 61.66194 1 CONECT 1035 4399 CONECT 1055 4399 CONECT 1220 4399 CONECT 1245 4399 CONECT 3204 4498 CONECT 3224 4498 CONECT 3389 4498 CONECT 3414 4498 CONECT 4363 4364 4368 CONECT 4364 4363 4365 CONECT 4365 4364 4366 CONECT 4366 4365 4367 4372 CONECT 4367 4366 4368 4370 CONECT 4368 4363 4367 4369 CONECT 4369 4368 CONECT 4370 4367 4371 CONECT 4371 4370 4372 CONECT 4372 4366 4371 4375 CONECT 4373 4376 4382 4388 4396 CONECT 4374 4377 4383 4388 4398 CONECT 4375 4372 4380 4392 CONECT 4376 4373 CONECT 4377 4374 CONECT 4378 4379 4384 4394 CONECT 4379 4378 CONECT 4380 4375 4381 4386 CONECT 4381 4380 CONECT 4382 4373 CONECT 4383 4374 CONECT 4384 4378 4385 4389 CONECT 4385 4384 CONECT 4386 4380 4387 4391 CONECT 4387 4386 CONECT 4388 4373 4374 CONECT 4389 4384 4390 4393 CONECT 4390 4389 CONECT 4391 4386 4392 4395 CONECT 4392 4375 4391 CONECT 4393 4389 4394 4397 CONECT 4394 4378 4393 CONECT 4395 4391 4396 CONECT 4396 4373 4395 CONECT 4397 4393 4398 CONECT 4398 4374 4397 CONECT 4399 1035 1055 1220 1245 CONECT 4400 4412 4416 CONECT 4401 4420 4421 CONECT 4402 4403 4424 CONECT 4403 4402 4404 CONECT 4404 4403 4405 4425 CONECT 4405 4404 4426 4428 CONECT 4406 4426 4427 CONECT 4407 4427 4428 CONECT 4408 4409 CONECT 4409 4408 4410 4411 4412 CONECT 4410 4409 CONECT 4411 4409 CONECT 4412 4400 4409 4413 CONECT 4413 4412 4414 4432 CONECT 4414 4413 4415 CONECT 4415 4414 4416 CONECT 4416 4400 4415 4417 CONECT 4417 4416 4418 4419 4420 CONECT 4418 4417 CONECT 4419 4417 CONECT 4420 4401 4417 4431 CONECT 4421 4401 4422 CONECT 4422 4421 4423 4430 CONECT 4423 4422 4424 CONECT 4424 4402 4423 4425 CONECT 4425 4404 4424 CONECT 4426 4405 4406 CONECT 4427 4406 4407 CONECT 4428 4405 4407 4429 CONECT 4429 4428 CONECT 4430 4422 4431 CONECT 4431 4420 4430 CONECT 4432 4413 CONECT 4433 4434 4435 CONECT 4434 4433 CONECT 4435 4433 4436 CONECT 4436 4435 4437 CONECT 4437 4436 4438 CONECT 4438 4437 4439 CONECT 4439 4438 CONECT 4440 4441 4442 4443 4444 CONECT 4441 4440 CONECT 4442 4440 CONECT 4443 4440 CONECT 4444 4440 CONECT 4445 4446 4447 4448 4449 CONECT 4446 4445 CONECT 4447 4445 CONECT 4448 4445 CONECT 4449 4445 CONECT 4450 4451 4452 4453 4454 CONECT 4451 4450 CONECT 4452 4450 CONECT 4453 4450 CONECT 4454 4450 CONECT 4455 4456 4457 4458 4459 CONECT 4456 4455 CONECT 4457 4455 CONECT 4458 4455 CONECT 4459 4455 CONECT 4462 4463 4467 CONECT 4463 4462 4464 CONECT 4464 4463 4465 CONECT 4465 4464 4466 4471 CONECT 4466 4465 4467 4469 CONECT 4467 4462 4466 4468 CONECT 4468 4467 CONECT 4469 4466 4470 CONECT 4470 4469 4471 CONECT 4471 4465 4470 4474 CONECT 4472 4475 4481 4487 4495 CONECT 4473 4476 4482 4487 4497 CONECT 4474 4471 4479 4491 CONECT 4475 4472 CONECT 4476 4473 CONECT 4477 4478 4483 4493 CONECT 4478 4477 CONECT 4479 4474 4480 4485 CONECT 4480 4479 CONECT 4481 4472 CONECT 4482 4473 CONECT 4483 4477 4484 4488 CONECT 4484 4483 CONECT 4485 4479 4486 4490 CONECT 4486 4485 CONECT 4487 4472 4473 CONECT 4488 4483 4489 4492 CONECT 4489 4488 CONECT 4490 4485 4491 4494 CONECT 4491 4474 4490 CONECT 4492 4488 4493 4496 CONECT 4493 4477 4492 CONECT 4494 4490 4495 CONECT 4495 4472 4494 CONECT 4496 4492 4497 CONECT 4497 4473 4496 CONECT 4498 3204 3224 3389 3414 CONECT 4499 4500 4501 CONECT 4500 4499 CONECT 4501 4499 4502 CONECT 4502 4501 4503 CONECT 4503 4502 4504 CONECT 4504 4503 4505 CONECT 4505 4504 CONECT 4506 4518 4522 CONECT 4507 4526 4527 CONECT 4508 4509 4530 CONECT 4509 4508 4510 CONECT 4510 4509 4511 4531 CONECT 4511 4510 4532 4534 CONECT 4512 4532 4533 CONECT 4513 4533 4534 CONECT 4514 4515 CONECT 4515 4514 4516 4517 4518 CONECT 4516 4515 CONECT 4517 4515 CONECT 4518 4506 4515 4519 CONECT 4519 4518 4520 4538 CONECT 4520 4519 4521 CONECT 4521 4520 4522 CONECT 4522 4506 4521 4523 CONECT 4523 4522 4524 4525 4526 CONECT 4524 4523 CONECT 4525 4523 CONECT 4526 4507 4523 4537 CONECT 4527 4507 4528 CONECT 4528 4527 4529 4536 CONECT 4529 4528 4530 CONECT 4530 4508 4529 4531 CONECT 4531 4510 4530 CONECT 4532 4511 4512 CONECT 4533 4512 4513 CONECT 4534 4511 4513 4535 CONECT 4535 4534 CONECT 4536 4528 4537 CONECT 4537 4526 4536 CONECT 4538 4519 CONECT 4539 4540 4541 4542 4543 CONECT 4540 4539 CONECT 4541 4539 CONECT 4542 4539 CONECT 4543 4539 CONECT 4544 4545 4546 4547 4548 CONECT 4545 4544 CONECT 4546 4544 CONECT 4547 4544 CONECT 4548 4544 CONECT 4549 4550 4551 4552 4553 CONECT 4550 4549 CONECT 4551 4549 CONECT 4552 4549 CONECT 4553 4549 CONECT 4554 4555 4556 4557 4558 CONECT 4555 4554 CONECT 4556 4554 CONECT 4557 4554 CONECT 4558 4554 MASTER 405 0 19 21 22 0 0 12 4634 2 202 48 END