HEADER MEMBRANE PROTEIN 11-NOV-22 8BMZ TITLE BACTEROIDES THETAIOTAOMICRON SURFACE LIPOPROTEIN BT1954 BOUND TO TITLE 2 ADENOSYLCOBALAMIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SURFACE LAYER PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_1954; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA PROPELLER VITAMIN B12 BINDING SURFACE PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ABELLON-RUIZ,K.JANA,A.SILALE,A.BASLE,U.KLEINEKATHOFER,B.VAN DEN AUTHOR 2 BERG REVDAT 2 20-SEP-23 8BMZ 1 REMARK REVDAT 1 16-AUG-23 8BMZ 0 JRNL AUTH J.ABELLON-RUIZ,K.JANA,A.SILALE,A.M.FREY,A.BASLE,M.TROST, JRNL AUTH 2 U.KLEINEKATHOFER,B.VAN DEN BERG JRNL TITL BTUB TONB-DEPENDENT TRANSPORTERS AND BTUG SURFACE JRNL TITL 2 LIPOPROTEINS FORM STABLE COMPLEXES FOR VITAMIN B 12 UPTAKE JRNL TITL 3 IN GUT BACTEROIDES. JRNL REF NAT COMMUN V. 14 4714 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37543597 JRNL DOI 10.1038/S41467-023-40427-2 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.828 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 246 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81200 REMARK 3 B22 (A**2) : -3.16000 REMARK 3 B33 (A**2) : 0.11100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.42600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5877 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5058 ; 0.006 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8087 ; 1.790 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11771 ; 0.669 ; 1.550 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 676 ; 8.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ; 8.848 ; 7.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ;14.595 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6613 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1251 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 950 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 29 ; 0.154 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2723 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2660 ; 1.961 ; 2.185 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2660 ; 1.920 ; 2.186 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3323 ; 2.961 ; 3.264 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3324 ; 2.968 ; 3.267 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3217 ; 2.312 ; 2.446 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3217 ; 2.312 ; 2.446 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4761 ; 3.459 ; 3.595 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4762 ; 3.459 ; 3.595 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 40 A 369 1 REMARK 3 1 A 40 A 369 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 370 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1701 7.7578 45.2936 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: 0.0340 REMARK 3 T33: 0.0430 T12: 0.0099 REMARK 3 T13: 0.0292 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.4357 L22: 1.5096 REMARK 3 L33: 1.3703 L12: -0.1721 REMARK 3 L13: 0.3824 L23: 0.1605 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: 0.2673 S13: 0.0459 REMARK 3 S21: -0.0868 S22: 0.0209 S23: 0.0330 REMARK 3 S31: 0.0273 S32: 0.1060 S33: -0.0733 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 34.9613 -1.1985 15.1668 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.0253 REMARK 3 T33: 0.0216 T12: -0.0020 REMARK 3 T13: 0.0384 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.2411 L22: 1.4108 REMARK 3 L33: 2.4651 L12: -0.2663 REMARK 3 L13: 0.3381 L23: -0.1461 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.0696 S13: -0.0154 REMARK 3 S21: -0.0321 S22: 0.0362 S23: 0.0712 REMARK 3 S31: -0.0557 S32: -0.2399 S33: 0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292124874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89843 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 70.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.23100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 70.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DSM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULPHATE, 0.1M TRIS PH REMARK 280 8.5, 1.26 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.35450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 32 REMARK 465 MET A 33 REMARK 465 LYS A 34 REMARK 465 TRP A 35 REMARK 465 ASP A 36 REMARK 465 TYR A 37 REMARK 465 GLY A 38 REMARK 465 GLU A 39 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 CYS B 32 REMARK 465 MET B 33 REMARK 465 LYS B 34 REMARK 465 TRP B 35 REMARK 465 ASP B 36 REMARK 465 TYR B 37 REMARK 465 GLY B 38 REMARK 465 GLU B 39 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN B 184 O3 SO4 B 405 1.59 REMARK 500 O HOH B 514 O HOH B 597 1.90 REMARK 500 O HOH B 593 O HOH B 600 2.09 REMARK 500 O ARG B 152 O HOH B 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 74 CD GLU B 74 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 59 18.85 86.38 REMARK 500 VAL A 91 70.20 64.94 REMARK 500 MET A 95 133.38 -172.73 REMARK 500 SER A 131 77.00 -171.68 REMARK 500 ARG A 133 -68.23 -125.21 REMARK 500 TYR A 161 43.01 75.84 REMARK 500 SER A 178 119.12 -160.01 REMARK 500 GLU A 180 -110.52 -142.97 REMARK 500 TRP A 194 -86.47 -89.72 REMARK 500 ASN A 198 37.00 -162.80 REMARK 500 GLN A 219 64.42 63.90 REMARK 500 PHE A 267 -149.18 -106.89 REMARK 500 GLU A 275 67.59 62.35 REMARK 500 ASN A 289 83.38 -155.20 REMARK 500 ASN A 290 -64.98 67.87 REMARK 500 THR A 313 -148.98 -119.23 REMARK 500 TYR A 316 -39.06 -135.89 REMARK 500 ILE A 333 -75.31 76.88 REMARK 500 GLN A 336 -51.43 -128.66 REMARK 500 VAL A 356 -146.09 -124.04 REMARK 500 ILE A 359 75.30 38.78 REMARK 500 GLN B 59 16.56 88.56 REMARK 500 VAL B 91 70.61 63.61 REMARK 500 MET B 95 131.48 -176.45 REMARK 500 SER B 131 81.67 -173.51 REMARK 500 ARG B 133 -65.44 -123.26 REMARK 500 TYR B 161 44.32 74.90 REMARK 500 GLU B 180 -109.58 -141.31 REMARK 500 TRP B 194 -87.10 -88.17 REMARK 500 ASN B 198 38.50 -163.25 REMARK 500 GLN B 219 64.67 61.00 REMARK 500 PHE B 267 -145.36 -105.41 REMARK 500 ASN B 289 83.43 -158.18 REMARK 500 ASN B 290 -65.55 65.21 REMARK 500 THR B 313 -149.56 -121.92 REMARK 500 TYR B 316 -41.37 -136.94 REMARK 500 ILE B 333 -74.52 79.22 REMARK 500 VAL B 356 -143.48 -122.03 REMARK 500 ILE B 359 74.32 38.20 REMARK 500 HIS B 371 38.66 -97.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 199 0.09 SIDE CHAIN REMARK 500 ARG A 301 0.09 SIDE CHAIN REMARK 500 ARG A 305 0.09 SIDE CHAIN REMARK 500 ARG A 311 0.08 SIDE CHAIN REMARK 500 ARG B 125 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 608 DISTANCE = 6.34 ANGSTROMS DBREF 8BMZ A 32 366 UNP Q8A6D0 Q8A6D0_BACTN 32 366 DBREF 8BMZ B 32 366 UNP Q8A6D0 Q8A6D0_BACTN 32 366 SEQADV 8BMZ LEU A 367 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ GLU A 368 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS A 369 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS A 370 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS A 371 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS A 372 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS A 373 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS A 374 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ LEU B 367 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ GLU B 368 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS B 369 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS B 370 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS B 371 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS B 372 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS B 373 UNP Q8A6D0 EXPRESSION TAG SEQADV 8BMZ HIS B 374 UNP Q8A6D0 EXPRESSION TAG SEQRES 1 A 343 CYS MET LYS TRP ASP TYR GLY GLU MET GLU ASP PHE SER SEQRES 2 A 343 VAL SER ALA SER GLY LEU PHE ILE THR ASN GLU GLY ASN SEQRES 3 A 343 PHE GLN TYR SER ASN ALA THR LEU SER TYR TYR ASP PRO SEQRES 4 A 343 ALA THR CYS GLU VAL GLU ASN GLU VAL PHE TYR ARG ALA SEQRES 5 A 343 ASN GLY PHE LYS LEU GLY ASP VAL ALA GLN SER MET VAL SEQRES 6 A 343 ILE ARG ASP GLY ILE GLY TRP ILE VAL VAL ASN ASN SER SEQRES 7 A 343 HIS VAL ILE PHE ALA ILE ASP ILE ASN THR PHE LYS GLU SEQRES 8 A 343 VAL GLY ARG ILE THR GLY PHE THR SER PRO ARG TYR ILE SEQRES 9 A 343 HIS PHE LEU SER ASP GLU LYS ALA TYR VAL THR GLN ILE SEQRES 10 A 343 TRP ASP TYR ARG ILE PHE ILE ILE ASN PRO LYS THR TYR SEQRES 11 A 343 GLU ILE THR GLY TYR ILE GLU CYS PRO ASP MET ASP MET SEQRES 12 A 343 GLU SER GLY SER THR GLU GLN MET VAL GLN TYR GLY LYS SEQRES 13 A 343 TYR VAL TYR VAL ASN CYS TRP SER TYR GLN ASN ARG ILE SEQRES 14 A 343 LEU LYS ILE ASP THR GLU THR ASP LYS VAL VAL ASP GLU SEQRES 15 A 343 LEU THR ILE GLY ILE GLN PRO THR SER LEU VAL MET ASP SEQRES 16 A 343 LYS TYR ASN LYS MET TRP THR ILE THR ASP GLY GLY TYR SEQRES 17 A 343 GLU GLY SER PRO TYR GLY TYR GLU ALA PRO SER LEU TYR SEQRES 18 A 343 ARG ILE ASP ALA GLU THR PHE THR VAL GLU LYS GLN PHE SEQRES 19 A 343 LYS PHE LYS LEU GLY ASP TRP PRO SER GLU VAL GLN LEU SEQRES 20 A 343 ASN GLY THR ARG ASP THR LEU TYR TRP ILE ASN ASN ASP SEQRES 21 A 343 ILE TRP ARG MET PRO VAL GLU ALA ASP ARG VAL PRO VAL SEQRES 22 A 343 ARG PRO PHE LEU GLU PHE ARG ASP THR LYS TYR TYR GLY SEQRES 23 A 343 LEU THR VAL ASN PRO ASN ASN GLY GLU VAL TYR VAL ALA SEQRES 24 A 343 ASP ALA ILE ASP TYR GLN GLN GLN GLY ILE VAL TYR ARG SEQRES 25 A 343 TYR SER PRO GLN GLY LYS LEU ILE ASP GLU PHE TYR VAL SEQRES 26 A 343 GLY ILE ILE PRO GLY ALA PHE CYS TRP LYS LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS SEQRES 1 B 343 CYS MET LYS TRP ASP TYR GLY GLU MET GLU ASP PHE SER SEQRES 2 B 343 VAL SER ALA SER GLY LEU PHE ILE THR ASN GLU GLY ASN SEQRES 3 B 343 PHE GLN TYR SER ASN ALA THR LEU SER TYR TYR ASP PRO SEQRES 4 B 343 ALA THR CYS GLU VAL GLU ASN GLU VAL PHE TYR ARG ALA SEQRES 5 B 343 ASN GLY PHE LYS LEU GLY ASP VAL ALA GLN SER MET VAL SEQRES 6 B 343 ILE ARG ASP GLY ILE GLY TRP ILE VAL VAL ASN ASN SER SEQRES 7 B 343 HIS VAL ILE PHE ALA ILE ASP ILE ASN THR PHE LYS GLU SEQRES 8 B 343 VAL GLY ARG ILE THR GLY PHE THR SER PRO ARG TYR ILE SEQRES 9 B 343 HIS PHE LEU SER ASP GLU LYS ALA TYR VAL THR GLN ILE SEQRES 10 B 343 TRP ASP TYR ARG ILE PHE ILE ILE ASN PRO LYS THR TYR SEQRES 11 B 343 GLU ILE THR GLY TYR ILE GLU CYS PRO ASP MET ASP MET SEQRES 12 B 343 GLU SER GLY SER THR GLU GLN MET VAL GLN TYR GLY LYS SEQRES 13 B 343 TYR VAL TYR VAL ASN CYS TRP SER TYR GLN ASN ARG ILE SEQRES 14 B 343 LEU LYS ILE ASP THR GLU THR ASP LYS VAL VAL ASP GLU SEQRES 15 B 343 LEU THR ILE GLY ILE GLN PRO THR SER LEU VAL MET ASP SEQRES 16 B 343 LYS TYR ASN LYS MET TRP THR ILE THR ASP GLY GLY TYR SEQRES 17 B 343 GLU GLY SER PRO TYR GLY TYR GLU ALA PRO SER LEU TYR SEQRES 18 B 343 ARG ILE ASP ALA GLU THR PHE THR VAL GLU LYS GLN PHE SEQRES 19 B 343 LYS PHE LYS LEU GLY ASP TRP PRO SER GLU VAL GLN LEU SEQRES 20 B 343 ASN GLY THR ARG ASP THR LEU TYR TRP ILE ASN ASN ASP SEQRES 21 B 343 ILE TRP ARG MET PRO VAL GLU ALA ASP ARG VAL PRO VAL SEQRES 22 B 343 ARG PRO PHE LEU GLU PHE ARG ASP THR LYS TYR TYR GLY SEQRES 23 B 343 LEU THR VAL ASN PRO ASN ASN GLY GLU VAL TYR VAL ALA SEQRES 24 B 343 ASP ALA ILE ASP TYR GLN GLN GLN GLY ILE VAL TYR ARG SEQRES 25 B 343 TYR SER PRO GLN GLY LYS LEU ILE ASP GLU PHE TYR VAL SEQRES 26 B 343 GLY ILE ILE PRO GLY ALA PHE CYS TRP LYS LEU GLU HIS SEQRES 27 B 343 HIS HIS HIS HIS HIS HET CL A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET B1Z A 404 203 HET CL B 401 1 HET CL B 402 1 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET B1Z B 406 203 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM B1Z ADENOSYLCOBALAMIN HETSYN B1Z COBAMAMIDE FORMUL 3 CL 3(CL 1-) FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 B1Z 2(C72 H101 CO N18 O17 P) FORMUL 13 HOH *223(H2 O) HELIX 1 AA1 GLU A 78 GLY A 85 1 8 HELIX 2 AA2 GLU B 78 GLY B 85 1 8 SHEET 1 AA1 4 GLU A 74 GLU A 76 0 SHEET 2 AA1 4 THR A 64 ASP A 69 -1 N TYR A 67 O GLU A 76 SHEET 3 AA1 4 GLY A 49 ASN A 54 -1 N ILE A 52 O SER A 66 SHEET 4 AA1 4 PRO A 360 LYS A 366 -1 O CYS A 364 N PHE A 51 SHEET 1 AA2 4 ALA A 92 ARG A 98 0 SHEET 2 AA2 4 ILE A 101 VAL A 106 -1 O TRP A 103 N VAL A 96 SHEET 3 AA2 4 VAL A 111 ASP A 116 -1 O PHE A 113 N ILE A 104 SHEET 4 AA2 4 GLU A 122 THR A 127 -1 O VAL A 123 N ALA A 114 SHEET 1 AA3 4 PRO A 132 SER A 139 0 SHEET 2 AA3 4 LYS A 142 GLN A 147 -1 O LYS A 142 N LEU A 138 SHEET 3 AA3 4 ARG A 152 ASN A 157 -1 O ILE A 156 N ALA A 143 SHEET 4 AA3 4 GLU A 162 GLU A 168 -1 O ILE A 167 N ILE A 153 SHEET 1 AA4 4 MET A 182 TYR A 185 0 SHEET 2 AA4 4 TYR A 188 CYS A 193 -1 O TYR A 188 N TYR A 185 SHEET 3 AA4 4 ARG A 199 ASP A 204 -1 O ILE A 203 N VAL A 189 SHEET 4 AA4 4 LYS A 209 THR A 215 -1 O LYS A 209 N ASP A 204 SHEET 1 AA5 4 VAL A 224 MET A 225 0 SHEET 2 AA5 4 LYS A 230 ILE A 234 -1 O TRP A 232 N VAL A 224 SHEET 3 AA5 4 SER A 250 ASP A 255 -1 O ILE A 254 N MET A 231 SHEET 4 AA5 4 THR A 260 LYS A 266 -1 O PHE A 265 N LEU A 251 SHEET 1 AA6 3 SER A 274 LEU A 278 0 SHEET 2 AA6 3 THR A 284 ILE A 288 -1 O ILE A 288 N SER A 274 SHEET 3 AA6 3 ILE A 292 PRO A 296 -1 O MET A 295 N LEU A 285 SHEET 1 AA7 4 TYR A 315 VAL A 320 0 SHEET 2 AA7 4 VAL A 327 ASP A 331 -1 O ALA A 330 N TYR A 316 SHEET 3 AA7 4 ILE A 340 TYR A 344 -1 O ILE A 340 N ASP A 331 SHEET 4 AA7 4 LEU A 350 TYR A 355 -1 O ILE A 351 N ARG A 343 SHEET 1 AA8 4 GLU B 74 ASN B 77 0 SHEET 2 AA8 4 THR B 64 ASP B 69 -1 N TYR B 67 O GLU B 76 SHEET 3 AA8 4 GLY B 49 ASN B 54 -1 N ILE B 52 O SER B 66 SHEET 4 AA8 4 PRO B 360 LYS B 366 -1 O CYS B 364 N PHE B 51 SHEET 1 AA9 4 ALA B 92 ARG B 98 0 SHEET 2 AA9 4 ILE B 101 VAL B 106 -1 O TRP B 103 N VAL B 96 SHEET 3 AA9 4 VAL B 111 ASP B 116 -1 O ILE B 115 N GLY B 102 SHEET 4 AA9 4 GLU B 122 THR B 127 -1 O GLY B 124 N ALA B 114 SHEET 1 AB1 4 PRO B 132 SER B 139 0 SHEET 2 AB1 4 LYS B 142 GLN B 147 -1 O LYS B 142 N LEU B 138 SHEET 3 AB1 4 ARG B 152 ASN B 157 -1 O ILE B 156 N ALA B 143 SHEET 4 AB1 4 GLU B 162 GLU B 168 -1 O GLU B 162 N ASN B 157 SHEET 1 AB2 4 MET B 182 TYR B 185 0 SHEET 2 AB2 4 TYR B 188 CYS B 193 -1 O TYR B 188 N TYR B 185 SHEET 3 AB2 4 ARG B 199 ASP B 204 -1 O ILE B 203 N VAL B 189 SHEET 4 AB2 4 LYS B 209 THR B 215 -1 O LYS B 209 N ASP B 204 SHEET 1 AB3 4 VAL B 224 MET B 225 0 SHEET 2 AB3 4 LYS B 230 ILE B 234 -1 O TRP B 232 N VAL B 224 SHEET 3 AB3 4 SER B 250 ASP B 255 -1 O ILE B 254 N MET B 231 SHEET 4 AB3 4 THR B 260 LYS B 266 -1 O PHE B 265 N LEU B 251 SHEET 1 AB4 3 SER B 274 LEU B 278 0 SHEET 2 AB4 3 THR B 284 ILE B 288 -1 O ILE B 288 N SER B 274 SHEET 3 AB4 3 ILE B 292 PRO B 296 -1 O MET B 295 N LEU B 285 SHEET 1 AB5 4 TYR B 315 VAL B 320 0 SHEET 2 AB5 4 VAL B 327 ASP B 331 -1 O ALA B 330 N TYR B 316 SHEET 3 AB5 4 ILE B 340 TYR B 344 -1 O ILE B 340 N ASP B 331 SHEET 4 AB5 4 LEU B 350 TYR B 355 -1 O ILE B 351 N ARG B 343 CRYST1 80.723 58.709 101.894 90.00 104.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012388 0.000000 0.003119 0.00000 SCALE2 0.000000 0.017033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010120 0.00000