HEADER DNA BINDING PROTEIN 12-NOV-22 8BN6 TITLE PSEUDOMONAS AERUGINOSA DNA GYRASE B 24KDA ATPASE SUBDOMAIN COMPLEXED TITLE 2 WITH EBL3021 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 EC: 5.6.2.2; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CORRESPONDS TO RESIDUES 1-221 OF FULL-LENGTH WILD-TYPE COMPND 7 PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: GYRB, PA0004; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DNA GYRASE, GYRB, INHIBITOR, ANTIBACTERIAL, ISOMERASE, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DURCIK,A.ZEGA,N.ZIDAR,J.ILAS,T.TOMASIC,L.P.MASIC,J.E.A.MUNDY, AUTHOR 2 C.E.M.STEVENSON,N.BURTON,D.M.LAWSON,A.MAXWELL,D.KIKELJ REVDAT 4 07-FEB-24 8BN6 1 REMARK REVDAT 3 24-MAY-23 8BN6 1 FORMUL REVDAT 2 05-APR-23 8BN6 1 JRNL REVDAT 1 29-MAR-23 8BN6 0 JRNL AUTH M.DURCIK,A.E.COTMAN,Z.TOPLAK,S.MOZINA,Z.SKOK,P.E.SZILI, JRNL AUTH 2 M.CZIKKELY,E.MAHARRAMOV,T.H.VU,M.V.PIRAS,N.ZIDAR,J.ILAS, JRNL AUTH 3 A.ZEGA,J.TRONTELJ,L.A.PARDO,D.HUGHES,D.HUSEBY, JRNL AUTH 4 T.BERRUGA-FERNANDEZ,S.CAO,I.SIMOFF,R.SVENSSON,S.V.KOROL, JRNL AUTH 5 Z.JIN,F.VICENTE,M.C.RAMOS,J.E.A.MUNDY,A.MAXWELL, JRNL AUTH 6 C.E.M.STEVENSON,D.M.LAWSON,B.GLINGHAMMAR,E.SJOSTROM, JRNL AUTH 7 M.BOHLIN,J.ORESKAR,S.ALVER,G.V.JANSSEN,G.J.STERK,D.KIKELJ, JRNL AUTH 8 C.PAL,T.TOMASIC,L.PETERLIN MASIC JRNL TITL NEW DUAL INHIBITORS OF BACTERIAL TOPOISOMERASES WITH JRNL TITL 2 BROAD-SPECTRUM ANTIBACTERIAL ACTIVITY AND IN VIVO EFFICACY JRNL TITL 3 AGAINST VANCOMYCIN-INTERMEDIATE STAPHYLOCOCCUS AUREUS . JRNL REF J.MED.CHEM. V. 66 3968 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 36877255 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01905 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1336 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4020 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : -2.03000 REMARK 3 B33 (A**2) : 1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1791 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1611 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2441 ; 1.392 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3753 ; 0.481 ; 1.559 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ;16.281 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 297 ;12.926 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2133 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 384 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8216 16.6851 2.2275 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0107 REMARK 3 T33: 0.0075 T12: 0.0057 REMARK 3 T13: -0.0023 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.5540 L22: 1.6275 REMARK 3 L33: 0.8806 L12: 0.2554 REMARK 3 L13: -0.1111 L23: -0.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: 0.0659 S13: 0.0011 REMARK 3 S21: -0.2664 S22: 0.0028 S23: 0.0336 REMARK 3 S31: 0.0747 S32: 0.0343 S33: 0.0329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8BN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 38.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 2.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7PTF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 22.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 THR A 6 REMARK 465 TYR A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 ILE A 12 REMARK 465 LYS A 13 REMARK 465 GLU A 220 REMARK 465 GLY A 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 451 O HOH A 456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 22 0.11 SIDE CHAIN REMARK 500 ARG A 24 0.09 SIDE CHAIN REMARK 500 ARG A 133 0.18 SIDE CHAIN REMARK 500 ARG A 137 0.09 SIDE CHAIN REMARK 500 ARG A 157 0.08 SIDE CHAIN REMARK 500 ARG A 193 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 616 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 76 O REMARK 620 2 GLY A 77 O 73.1 REMARK 620 3 SER A 165 O 82.3 67.5 REMARK 620 4 SER A 165 OG 145.6 74.1 75.7 REMARK 620 5 HOH A 490 O 140.0 127.7 135.1 71.1 REMARK 620 6 HOH A 499 O 65.5 127.4 132.6 147.2 76.1 REMARK 620 7 HOH A 521 O 100.2 134.4 66.9 95.1 86.8 85.0 REMARK 620 8 HOH A 534 O 86.7 79.2 146.7 97.4 68.2 67.8 146.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 411 O REMARK 620 2 HOH A 417 O 66.9 REMARK 620 3 HOH A 511 O 143.3 100.2 REMARK 620 4 HOH A 587 O 127.3 78.8 79.4 REMARK 620 5 HOH A 588 O 64.2 87.4 81.6 154.1 REMARK 620 6 HOH A 593 O 102.8 165.3 81.8 115.8 78.5 REMARK 620 7 HOH A 602 O 90.3 113.1 125.7 67.3 138.6 76.2 REMARK 620 N 1 2 3 4 5 6 DBREF 8BN6 A 1 221 UNP Q9I7C2 GYRB_PSEAE 1 221 SEQRES 1 A 221 MET SER GLU ASN ASN THR TYR ASP SER SER SER ILE LYS SEQRES 2 A 221 VAL LEU LYS GLY LEU ASP ALA VAL ARG LYS ARG PRO GLY SEQRES 3 A 221 MET TYR ILE GLY ASP THR ASP ASP GLY THR GLY LEU HIS SEQRES 4 A 221 HIS MET VAL PHE GLU VAL VAL ASP ASN SER ILE ASP GLU SEQRES 5 A 221 ALA LEU ALA GLY TYR CYS SER GLU ILE SER ILE THR ILE SEQRES 6 A 221 HIS THR ASP GLU SER ILE THR VAL ARG ASP ASN GLY ARG SEQRES 7 A 221 GLY ILE PRO VAL ASP ILE HIS LYS GLU GLU GLY VAL SER SEQRES 8 A 221 ALA ALA GLU VAL ILE MET THR VAL LEU HIS ALA GLY GLY SEQRES 9 A 221 LYS PHE ASP ASP ASN THR TYR LYS VAL SER GLY GLY LEU SEQRES 10 A 221 HIS GLY VAL GLY VAL SER VAL VAL ASN ALA LEU SER HIS SEQRES 11 A 221 GLU LEU ARG LEU THR ILE ARG ARG HIS ASN LYS VAL TRP SEQRES 12 A 221 GLU GLN VAL TYR HIS HIS GLY VAL PRO GLN PHE PRO LEU SEQRES 13 A 221 ARG GLU VAL GLY GLU THR ASP GLY SER GLY THR GLU VAL SEQRES 14 A 221 HIS PHE LYS PRO SER PRO GLU THR PHE SER ASN ILE HIS SEQRES 15 A 221 PHE SER TRP ASP ILE LEU ALA LYS ARG ILE ARG GLU LEU SEQRES 16 A 221 SER PHE LEU ASN SER GLY VAL GLY ILE LEU LEU ARG ASP SEQRES 17 A 221 GLU ARG THR GLY LYS GLU GLU LEU PHE LYS TYR GLU GLY HET CA A 301 1 HET CA A 302 1 HET R53 A 303 29 HETNAM CA CALCIUM ION HETNAM R53 2-[[3,4-BIS(CHLORANYL)-5-METHYL-1~{H}-PYRROL-2- HETNAM 2 R53 YL]CARBONYLAMINO]-4-MORPHOLIN-4-YL-1,3-BENZOTHIAZOLE- HETNAM 3 R53 6-CARBOXYLIC ACID FORMUL 2 CA 2(CA 2+) FORMUL 4 R53 C18 H16 CL2 N4 O4 S FORMUL 5 HOH *216(H2 O) HELIX 1 AA1 LYS A 16 ARG A 24 1 9 HELIX 2 AA2 PRO A 25 GLY A 30 1 6 HELIX 3 AA3 GLY A 35 ALA A 55 1 21 HELIX 4 AA4 SER A 91 VAL A 99 1 9 HELIX 5 AA5 ASP A 107 TYR A 111 5 5 HELIX 6 AA6 GLY A 121 LEU A 128 1 8 HELIX 7 AA7 SER A 184 ASN A 199 1 16 SHEET 1 AA1 3 VAL A 151 PRO A 152 0 SHEET 2 AA1 3 LYS A 141 HIS A 148 -1 N HIS A 148 O VAL A 151 SHEET 3 AA1 3 ARG A 157 GLU A 161 -1 O VAL A 159 N VAL A 142 SHEET 1 AA2 8 VAL A 151 PRO A 152 0 SHEET 2 AA2 8 LYS A 141 HIS A 148 -1 N HIS A 148 O VAL A 151 SHEET 3 AA2 8 SER A 129 ARG A 138 -1 N LEU A 134 O GLN A 145 SHEET 4 AA2 8 GLY A 166 PRO A 173 -1 O GLY A 166 N ARG A 137 SHEET 5 AA2 8 ILE A 71 ASP A 75 -1 N ASP A 75 O THR A 167 SHEET 6 AA2 8 GLU A 60 ILE A 65 -1 N SER A 62 O ARG A 74 SHEET 7 AA2 8 GLY A 203 ASP A 208 1 O LEU A 205 N ILE A 63 SHEET 8 AA2 8 LYS A 213 PHE A 217 -1 O LYS A 213 N ASP A 208 LINK O ASN A 76 CA CA A 301 1555 1555 2.38 LINK O GLY A 77 CA CA A 301 1555 1555 2.63 LINK O SER A 165 CA CA A 301 1555 1555 2.73 LINK OG SER A 165 CA CA A 301 1555 1555 2.34 LINK CA CA A 301 O HOH A 490 1555 1555 2.36 LINK CA CA A 301 O HOH A 499 1555 1555 2.73 LINK CA CA A 301 O HOH A 521 1555 1555 2.38 LINK CA CA A 301 O HOH A 534 1555 1555 2.28 LINK CA CA A 302 O HOH A 411 1555 1555 2.49 LINK CA CA A 302 O HOH A 417 1555 1555 2.39 LINK CA CA A 302 O HOH A 511 1555 1555 2.69 LINK CA CA A 302 O HOH A 587 1555 1555 2.63 LINK CA CA A 302 O HOH A 588 1555 1555 2.75 LINK CA CA A 302 O HOH A 593 1555 1555 2.46 LINK CA CA A 302 O HOH A 602 1555 1555 2.45 CRYST1 45.200 115.650 38.630 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025887 0.00000