HEADER HYDROLASE 14-NOV-22 8BNX TITLE CRYSTAL STRUCTURE OF PIF1 FROM DEFERRIBACTER DESULFURICANS IN COMPLEX TITLE 2 WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: AAA FAMILY ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEFERRIBACTER DESULFURICANS; SOURCE 3 ORGANISM_TAXID: 197162; SOURCE 4 STRAIN: DSM 14783 / JCM 11476 / NBRC 101012 / SSM1; SOURCE 5 GENE: DEFDS_0256; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS HELICASE THERMOPHILE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RETY,W.F.CHEN,X.G.XI REVDAT 2 07-FEB-24 8BNX 1 REMARK REVDAT 1 08-MAR-23 8BNX 0 JRNL AUTH S.RETY,Y.ZHANG,W.FU,S.WANG,W.F.CHEN,X.G.XI JRNL TITL STRUCTURAL STUDIES OF PIF1 HELICASES FROM THERMOPHILIC JRNL TITL 2 BACTERIA. JRNL REF MICROORGANISMS V. 11 2023 JRNL REFN ESSN 2076-2607 JRNL PMID 36838444 JRNL DOI 10.3390/MICROORGANISMS11020479 REMARK 2 REMARK 2 RESOLUTION. 3.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.9000 - 5.9600 1.00 3044 133 0.2214 0.2106 REMARK 3 2 5.9600 - 4.7300 1.00 2851 152 0.2329 0.2578 REMARK 3 3 4.7300 - 4.1400 1.00 2861 141 0.2254 0.2558 REMARK 3 4 4.1400 - 3.7600 1.00 2828 132 0.2540 0.2603 REMARK 3 5 3.7600 - 3.4900 1.00 2784 148 0.2564 0.3006 REMARK 3 6 3.4900 - 3.2800 1.00 2792 146 0.3008 0.3166 REMARK 3 7 3.2800 - 3.1200 1.00 2810 130 0.3046 0.3645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.366 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.925 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 97.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6872 REMARK 3 ANGLE : 0.677 9291 REMARK 3 CHIRALITY : 0.050 1069 REMARK 3 PLANARITY : 0.007 1161 REMARK 3 DIHEDRAL : 7.308 887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3370 -7.1592 -5.8949 REMARK 3 T TENSOR REMARK 3 T11: 1.1460 T22: 0.5624 REMARK 3 T33: 1.3096 T12: -0.0493 REMARK 3 T13: 0.2903 T23: -0.2178 REMARK 3 L TENSOR REMARK 3 L11: 2.5273 L22: 2.8366 REMARK 3 L33: 3.5459 L12: -0.8671 REMARK 3 L13: 0.7570 L23: 0.8620 REMARK 3 S TENSOR REMARK 3 S11: -0.3045 S12: -0.1059 S13: -0.3783 REMARK 3 S21: -0.0556 S22: -0.2943 S23: 1.5551 REMARK 3 S31: 0.6270 S32: 0.1654 S33: 0.3645 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8441 14.8073 -10.4458 REMARK 3 T TENSOR REMARK 3 T11: 0.4488 T22: 0.6402 REMARK 3 T33: 0.4504 T12: 0.0300 REMARK 3 T13: -0.0232 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.0275 L22: 5.6266 REMARK 3 L33: 4.3989 L12: -2.2990 REMARK 3 L13: 1.4173 L23: -0.6385 REMARK 3 S TENSOR REMARK 3 S11: -0.2312 S12: 0.4466 S13: -0.2908 REMARK 3 S21: -0.2796 S22: 0.2234 S23: 0.6485 REMARK 3 S31: 0.0651 S32: 0.2560 S33: 0.0553 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7634 10.7350 3.1396 REMARK 3 T TENSOR REMARK 3 T11: 0.5735 T22: 0.6558 REMARK 3 T33: 0.5033 T12: 0.2043 REMARK 3 T13: -0.0033 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 2.2236 L22: 4.0708 REMARK 3 L33: 3.5555 L12: -0.2806 REMARK 3 L13: 0.6539 L23: -0.9419 REMARK 3 S TENSOR REMARK 3 S11: -0.2086 S12: -0.4306 S13: 0.0556 REMARK 3 S21: 0.4065 S22: 0.1382 S23: -0.0659 REMARK 3 S31: 0.4877 S32: 0.0464 S33: 0.0931 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7499 25.6853 -1.6174 REMARK 3 T TENSOR REMARK 3 T11: 0.4600 T22: 1.1675 REMARK 3 T33: 2.2985 T12: 0.0951 REMARK 3 T13: 0.0534 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.2862 L22: 4.4580 REMARK 3 L33: 0.5981 L12: 2.1669 REMARK 3 L13: 0.1650 L23: 0.9293 REMARK 3 S TENSOR REMARK 3 S11: -0.1840 S12: 0.2668 S13: -2.1316 REMARK 3 S21: -1.2434 S22: 0.5418 S23: 0.7352 REMARK 3 S31: 0.1812 S32: -0.0199 S33: -0.2139 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5687 34.3273 9.5284 REMARK 3 T TENSOR REMARK 3 T11: 0.3264 T22: 1.7156 REMARK 3 T33: 1.5707 T12: -0.0370 REMARK 3 T13: 0.0410 T23: 0.3729 REMARK 3 L TENSOR REMARK 3 L11: 3.2683 L22: 0.6619 REMARK 3 L33: 2.7473 L12: -0.3688 REMARK 3 L13: 1.2020 L23: 0.4581 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: -1.5041 S13: -1.7856 REMARK 3 S21: 0.6110 S22: -0.2676 S23: 0.3361 REMARK 3 S31: -0.2392 S32: -1.2867 S33: 0.1796 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0586 44.0770 -0.5112 REMARK 3 T TENSOR REMARK 3 T11: 0.7729 T22: 0.5059 REMARK 3 T33: 0.4693 T12: 0.0845 REMARK 3 T13: 0.0905 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.0284 L22: 3.2987 REMARK 3 L33: 4.8292 L12: -1.6524 REMARK 3 L13: 1.9654 L23: -1.7842 REMARK 3 S TENSOR REMARK 3 S11: 0.2022 S12: -0.0775 S13: -0.0358 REMARK 3 S21: -0.1103 S22: -0.1740 S23: -0.0795 REMARK 3 S31: -0.5743 S32: -0.2230 S33: -0.0192 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 295 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9903 40.0094 -0.0693 REMARK 3 T TENSOR REMARK 3 T11: 0.5319 T22: 0.4768 REMARK 3 T33: 0.4932 T12: 0.1143 REMARK 3 T13: 0.0616 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.8899 L22: 1.0188 REMARK 3 L33: 3.4753 L12: -1.0837 REMARK 3 L13: 1.2603 L23: 0.4375 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: -0.0530 S13: -0.0859 REMARK 3 S21: -0.0343 S22: -0.1065 S23: 0.0872 REMARK 3 S31: -0.0009 S32: -0.5879 S33: -0.0865 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978530 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24905 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.544 REMARK 200 RESOLUTION RANGE LOW (A) : 104.256 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.10300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5FTD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL 100MM PEG 8K 12% ISOPROPANOL REMARK 280 5%, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 71.89850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.68800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.89850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.68800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 424 REMARK 465 GLN A 425 REMARK 465 LEU A 426 REMARK 465 SER A 427 REMARK 465 GLU A 428 REMARK 465 LYS A 429 REMARK 465 LYS A 430 REMARK 465 THR A 431 REMARK 465 PRO A 432 REMARK 465 LEU A 433 REMARK 465 GLU A 434 REMARK 465 GLU A 435 REMARK 465 LYS A 436 REMARK 465 ILE A 437 REMARK 465 SER A 438 REMARK 465 ILE A 439 REMARK 465 LEU A 440 REMARK 465 LYS A 441 REMARK 465 ARG A 442 REMARK 465 ALA A 443 REMARK 465 ILE A 444 REMARK 465 GLU A 445 REMARK 465 ARG A 446 REMARK 465 ASN A 447 REMARK 465 SER A 448 REMARK 465 PRO A 449 REMARK 465 LEU A 450 REMARK 465 GLU A 451 REMARK 465 ILE A 452 REMARK 465 VAL A 453 REMARK 465 TYR A 454 REMARK 465 LEU A 455 REMARK 465 LYS A 456 REMARK 465 THR A 457 REMARK 465 LYS A 458 REMARK 465 ASP A 459 REMARK 465 GLU A 460 REMARK 465 LYS A 461 REMARK 465 SER A 462 REMARK 465 LYS A 463 REMARK 465 ARG A 464 REMARK 465 VAL A 465 REMARK 465 ILE A 466 REMARK 465 ILE A 467 REMARK 465 PRO A 468 REMARK 465 LYS A 469 REMARK 465 GLU A 470 REMARK 465 VAL A 471 REMARK 465 GLY A 472 REMARK 465 GLU A 473 REMARK 465 MET A 474 REMARK 465 VAL A 475 REMARK 465 TYR A 476 REMARK 465 SER A 477 REMARK 465 GLY A 478 REMARK 465 LYS A 479 REMARK 465 SER A 480 REMARK 465 PHE A 481 REMARK 465 MET A 482 REMARK 465 GLY A 483 REMARK 465 LEU A 484 REMARK 465 LYS A 485 REMARK 465 GLY A 486 REMARK 465 PHE A 487 REMARK 465 CYS A 488 REMARK 465 THR A 489 REMARK 465 MET A 490 REMARK 465 ARG A 491 REMARK 465 ASN A 492 REMARK 465 ASP A 493 REMARK 465 GLU A 494 REMARK 465 ARG A 495 REMARK 465 VAL A 496 REMARK 465 PHE A 497 REMARK 465 ARG A 498 REMARK 465 ILE A 499 REMARK 465 ASP A 500 REMARK 465 ARG A 501 REMARK 465 ILE A 502 REMARK 465 LEU A 503 REMARK 465 GLU A 504 REMARK 465 ILE A 505 REMARK 465 LYS A 506 REMARK 465 GLU A 507 REMARK 465 ILE A 508 REMARK 465 ASN A 509 REMARK 465 ASP A 510 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 4 REMARK 465 LEU B 5 REMARK 465 THR B 147 REMARK 465 ASN B 148 REMARK 465 HIS B 149 REMARK 465 GLN B 150 REMARK 465 LYS B 151 REMARK 465 LYS B 152 REMARK 465 ALA B 153 REMARK 465 PHE B 154 REMARK 465 ASN B 155 REMARK 465 MET B 156 REMARK 465 TYR B 424 REMARK 465 GLN B 425 REMARK 465 LEU B 426 REMARK 465 SER B 427 REMARK 465 GLU B 428 REMARK 465 LYS B 429 REMARK 465 LYS B 430 REMARK 465 THR B 431 REMARK 465 PRO B 432 REMARK 465 LEU B 433 REMARK 465 GLU B 434 REMARK 465 GLU B 435 REMARK 465 LYS B 436 REMARK 465 ILE B 437 REMARK 465 SER B 438 REMARK 465 ILE B 439 REMARK 465 LEU B 440 REMARK 465 LYS B 441 REMARK 465 ARG B 442 REMARK 465 ALA B 443 REMARK 465 ILE B 444 REMARK 465 GLU B 445 REMARK 465 ARG B 446 REMARK 465 ASN B 447 REMARK 465 SER B 448 REMARK 465 PRO B 449 REMARK 465 LEU B 450 REMARK 465 GLU B 451 REMARK 465 ILE B 452 REMARK 465 VAL B 453 REMARK 465 TYR B 454 REMARK 465 LEU B 455 REMARK 465 LYS B 456 REMARK 465 THR B 457 REMARK 465 LYS B 458 REMARK 465 ASP B 459 REMARK 465 GLU B 460 REMARK 465 LYS B 461 REMARK 465 SER B 462 REMARK 465 LYS B 463 REMARK 465 ARG B 464 REMARK 465 VAL B 465 REMARK 465 ILE B 466 REMARK 465 ILE B 467 REMARK 465 PRO B 468 REMARK 465 LYS B 469 REMARK 465 GLU B 470 REMARK 465 VAL B 471 REMARK 465 GLY B 472 REMARK 465 GLU B 473 REMARK 465 MET B 474 REMARK 465 VAL B 475 REMARK 465 TYR B 476 REMARK 465 SER B 477 REMARK 465 GLY B 478 REMARK 465 LYS B 479 REMARK 465 SER B 480 REMARK 465 PHE B 481 REMARK 465 MET B 482 REMARK 465 GLY B 483 REMARK 465 LEU B 484 REMARK 465 LYS B 485 REMARK 465 GLY B 486 REMARK 465 PHE B 487 REMARK 465 CYS B 488 REMARK 465 THR B 489 REMARK 465 MET B 490 REMARK 465 ARG B 491 REMARK 465 ASN B 492 REMARK 465 ASP B 493 REMARK 465 GLU B 494 REMARK 465 ARG B 495 REMARK 465 VAL B 496 REMARK 465 PHE B 497 REMARK 465 ARG B 498 REMARK 465 ILE B 499 REMARK 465 ASP B 500 REMARK 465 ARG B 501 REMARK 465 ILE B 502 REMARK 465 LEU B 503 REMARK 465 GLU B 504 REMARK 465 ILE B 505 REMARK 465 LYS B 506 REMARK 465 GLU B 507 REMARK 465 ILE B 508 REMARK 465 ASN B 509 REMARK 465 ASP B 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 58.75 -93.68 REMARK 500 ASP A 83 54.93 -90.88 REMARK 500 GLN A 141 59.02 -93.38 REMARK 500 GLN A 185 65.82 62.41 REMARK 500 GLU A 313 -92.55 177.51 REMARK 500 LEU A 411 -3.18 75.22 REMARK 500 SER B 19 58.85 -93.63 REMARK 500 LEU B 44 148.84 -170.96 REMARK 500 TYR B 94 -0.91 74.92 REMARK 500 PRO B 143 155.09 -48.93 REMARK 500 LYS B 188 -4.32 74.34 REMARK 500 ASP B 221 -3.49 74.39 REMARK 500 LEU B 411 -3.31 75.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 314 GLY A 315 -143.98 REMARK 500 ILE B 182 TYR B 183 135.59 REMARK 500 SER B 186 ASP B 187 -141.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 184 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8BNX A 1 510 UNP D3PAZ1 D3PAZ1_DEFDS 1 510 DBREF 8BNX B 1 510 UNP D3PAZ1 D3PAZ1_DEFDS 1 510 SEQRES 1 A 510 MET LYS LEU ALA LEU ASN THR GLU PHE LYS LYS ALA ILE SEQRES 2 A 510 ASP LEU ALA THR ASN SER SER LYS ASN LEU PHE ILE THR SEQRES 3 A 510 GLY LYS ALA GLY THR GLY LYS SER THR PHE LEU LYS TYR SEQRES 4 A 510 LEU ILE ASN GLU LEU LEU PHE ASP ALA VAL VAL LEU ALA SEQRES 5 A 510 PRO THR GLY VAL ALA ALA ILE ASN ILE GLY GLY GLU THR SEQRES 6 A 510 ILE HIS SER PHE PHE ASN PHE PRO ILE ASN ILE THR PRO SEQRES 7 A 510 ASP LYS ILE PRO ASP LEU PHE ILE TYR ASP TYR GLU ILE SEQRES 8 A 510 TYR LYS TYR VAL ASN THR ILE ILE ILE ASP GLU ILE SER SEQRES 9 A 510 MET VAL ARG ALA ASP LEU LEU ASP CYS ILE ASP LEU PHE SEQRES 10 A 510 LEU LYS ARG VAL LYS ASN PRO LYS LEU PRO PHE GLY GLY SEQRES 11 A 510 THR LYS MET ILE PHE ILE GLY ASP LEU TYR GLN LEU PRO SEQRES 12 A 510 PRO VAL LEU THR ASN HIS GLN LYS LYS ALA PHE ASN MET SEQRES 13 A 510 GLU TYR GLU SER PRO TYR PHE PHE SER ALA LYS VAL PHE SEQRES 14 A 510 LYS GLU MET ASP MET GLU PHE ILE GLU PHE GLU THR ILE SEQRES 15 A 510 TYR ARG GLN SER ASP LYS LEU PHE ILE ASP ILE LEU ASN SEQRES 16 A 510 ARG ILE ARG ASN ASN THR VAL THR ASP GLU ASP ILE LYS SEQRES 17 A 510 ILE ILE ASN SER ARG VAL GLN ASP LYS ILE ASP ASN ASP SEQRES 18 A 510 ASP GLY TYR ILE TYR ILE THR THR VAL ASN LYS LYS ALA SEQRES 19 A 510 GLU GLU ILE ASN ASN GLN LYS LEU ASP LYS LEU LYS GLY SEQRES 20 A 510 LYS LEU TYR LYS LEU ASN GLY THR LEU LYS GLY ASN PHE SEQRES 21 A 510 ASP GLU ASN SER LEU PRO THR PRO LYS ASN LEU HIS LEU SEQRES 22 A 510 LYS ILE GLY ALA GLN VAL MET LEU LEU ASN ASN ALA PRO SEQRES 23 A 510 ASP ARG MET TRP VAL ASN GLY THR ILE GLY THR ILE THR SEQRES 24 A 510 ASN ILE PHE PRO ASP GLU MET ILE ILE GLU LEU ALA LEU SEQRES 25 A 510 GLU ASN GLY ASN ILE VAL GLU ILE THR PRO PHE LYS TRP SEQRES 26 A 510 ASP MET ILE LYS PHE THR TYR ASP LYS LYS GLU LYS LYS SEQRES 27 A 510 MET LEU SER GLU THR ILE GLY SER TYR THR GLN PHE PRO SEQRES 28 A 510 LEU LYS LEU ALA TYR ALA ILE THR VAL HIS LYS SER GLN SEQRES 29 A 510 GLY LYS THR PHE HIS LYS VAL ILE ILE ASP THR SER ARG SEQRES 30 A 510 HIS PHE PHE ALA PRO GLY GLN PHE TYR VAL ALA LEU SER SEQRES 31 A 510 ARG CYS THR SER LEU ASP GLY ILE ILE LEU THR LYS LYS SEQRES 32 A 510 ILE THR LYS ASN SER ILE ILE LEU ASP LYS LYS VAL VAL SEQRES 33 A 510 ASN PHE LEU THR ASN PHE GLN TYR GLN LEU SER GLU LYS SEQRES 34 A 510 LYS THR PRO LEU GLU GLU LYS ILE SER ILE LEU LYS ARG SEQRES 35 A 510 ALA ILE GLU ARG ASN SER PRO LEU GLU ILE VAL TYR LEU SEQRES 36 A 510 LYS THR LYS ASP GLU LYS SER LYS ARG VAL ILE ILE PRO SEQRES 37 A 510 LYS GLU VAL GLY GLU MET VAL TYR SER GLY LYS SER PHE SEQRES 38 A 510 MET GLY LEU LYS GLY PHE CYS THR MET ARG ASN ASP GLU SEQRES 39 A 510 ARG VAL PHE ARG ILE ASP ARG ILE LEU GLU ILE LYS GLU SEQRES 40 A 510 ILE ASN ASP SEQRES 1 B 510 MET LYS LEU ALA LEU ASN THR GLU PHE LYS LYS ALA ILE SEQRES 2 B 510 ASP LEU ALA THR ASN SER SER LYS ASN LEU PHE ILE THR SEQRES 3 B 510 GLY LYS ALA GLY THR GLY LYS SER THR PHE LEU LYS TYR SEQRES 4 B 510 LEU ILE ASN GLU LEU LEU PHE ASP ALA VAL VAL LEU ALA SEQRES 5 B 510 PRO THR GLY VAL ALA ALA ILE ASN ILE GLY GLY GLU THR SEQRES 6 B 510 ILE HIS SER PHE PHE ASN PHE PRO ILE ASN ILE THR PRO SEQRES 7 B 510 ASP LYS ILE PRO ASP LEU PHE ILE TYR ASP TYR GLU ILE SEQRES 8 B 510 TYR LYS TYR VAL ASN THR ILE ILE ILE ASP GLU ILE SER SEQRES 9 B 510 MET VAL ARG ALA ASP LEU LEU ASP CYS ILE ASP LEU PHE SEQRES 10 B 510 LEU LYS ARG VAL LYS ASN PRO LYS LEU PRO PHE GLY GLY SEQRES 11 B 510 THR LYS MET ILE PHE ILE GLY ASP LEU TYR GLN LEU PRO SEQRES 12 B 510 PRO VAL LEU THR ASN HIS GLN LYS LYS ALA PHE ASN MET SEQRES 13 B 510 GLU TYR GLU SER PRO TYR PHE PHE SER ALA LYS VAL PHE SEQRES 14 B 510 LYS GLU MET ASP MET GLU PHE ILE GLU PHE GLU THR ILE SEQRES 15 B 510 TYR ARG GLN SER ASP LYS LEU PHE ILE ASP ILE LEU ASN SEQRES 16 B 510 ARG ILE ARG ASN ASN THR VAL THR ASP GLU ASP ILE LYS SEQRES 17 B 510 ILE ILE ASN SER ARG VAL GLN ASP LYS ILE ASP ASN ASP SEQRES 18 B 510 ASP GLY TYR ILE TYR ILE THR THR VAL ASN LYS LYS ALA SEQRES 19 B 510 GLU GLU ILE ASN ASN GLN LYS LEU ASP LYS LEU LYS GLY SEQRES 20 B 510 LYS LEU TYR LYS LEU ASN GLY THR LEU LYS GLY ASN PHE SEQRES 21 B 510 ASP GLU ASN SER LEU PRO THR PRO LYS ASN LEU HIS LEU SEQRES 22 B 510 LYS ILE GLY ALA GLN VAL MET LEU LEU ASN ASN ALA PRO SEQRES 23 B 510 ASP ARG MET TRP VAL ASN GLY THR ILE GLY THR ILE THR SEQRES 24 B 510 ASN ILE PHE PRO ASP GLU MET ILE ILE GLU LEU ALA LEU SEQRES 25 B 510 GLU ASN GLY ASN ILE VAL GLU ILE THR PRO PHE LYS TRP SEQRES 26 B 510 ASP MET ILE LYS PHE THR TYR ASP LYS LYS GLU LYS LYS SEQRES 27 B 510 MET LEU SER GLU THR ILE GLY SER TYR THR GLN PHE PRO SEQRES 28 B 510 LEU LYS LEU ALA TYR ALA ILE THR VAL HIS LYS SER GLN SEQRES 29 B 510 GLY LYS THR PHE HIS LYS VAL ILE ILE ASP THR SER ARG SEQRES 30 B 510 HIS PHE PHE ALA PRO GLY GLN PHE TYR VAL ALA LEU SER SEQRES 31 B 510 ARG CYS THR SER LEU ASP GLY ILE ILE LEU THR LYS LYS SEQRES 32 B 510 ILE THR LYS ASN SER ILE ILE LEU ASP LYS LYS VAL VAL SEQRES 33 B 510 ASN PHE LEU THR ASN PHE GLN TYR GLN LEU SER GLU LYS SEQRES 34 B 510 LYS THR PRO LEU GLU GLU LYS ILE SER ILE LEU LYS ARG SEQRES 35 B 510 ALA ILE GLU ARG ASN SER PRO LEU GLU ILE VAL TYR LEU SEQRES 36 B 510 LYS THR LYS ASP GLU LYS SER LYS ARG VAL ILE ILE PRO SEQRES 37 B 510 LYS GLU VAL GLY GLU MET VAL TYR SER GLY LYS SER PHE SEQRES 38 B 510 MET GLY LEU LYS GLY PHE CYS THR MET ARG ASN ASP GLU SEQRES 39 B 510 ARG VAL PHE ARG ILE ASP ARG ILE LEU GLU ILE LYS GLU SEQRES 40 B 510 ILE ASN ASP HET ANP A1501 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP C10 H17 N6 O12 P3 HELIX 1 AA1 ASN A 6 ASN A 18 1 13 HELIX 2 AA2 GLY A 32 ASN A 42 1 11 HELIX 3 AA3 THR A 54 GLY A 62 1 9 HELIX 4 AA4 ILE A 66 ASN A 71 1 6 HELIX 5 AA5 ASP A 88 VAL A 95 5 8 HELIX 6 AA6 GLU A 102 VAL A 106 5 5 HELIX 7 AA7 ARG A 107 LYS A 122 1 16 HELIX 8 AA8 LEU A 126 THR A 131 5 6 HELIX 9 AA9 TYR A 162 ALA A 166 5 5 HELIX 10 AB1 VAL A 168 MET A 172 5 5 HELIX 11 AB2 ASP A 187 ASN A 200 1 14 HELIX 12 AB3 THR A 203 SER A 212 1 10 HELIX 13 AB4 VAL A 230 LYS A 244 1 15 HELIX 14 AB5 ASP A 261 LEU A 265 5 5 HELIX 15 AB6 GLY A 383 ARG A 391 1 9 HELIX 16 AB7 SER A 394 ASP A 396 5 3 HELIX 17 AB8 LEU A 411 THR A 420 1 10 HELIX 18 AB9 THR B 7 ASN B 18 1 12 HELIX 19 AC1 GLY B 30 ASN B 42 1 13 HELIX 20 AC2 THR B 54 GLY B 62 1 9 HELIX 21 AC3 ILE B 66 ASN B 71 1 6 HELIX 22 AC4 ASP B 88 LYS B 93 1 6 HELIX 23 AC5 GLU B 102 VAL B 106 5 5 HELIX 24 AC6 ARG B 107 LYS B 122 1 16 HELIX 25 AC7 LEU B 126 THR B 131 5 6 HELIX 26 AC8 TYR B 162 MET B 172 5 11 HELIX 27 AC9 LEU B 189 ASN B 200 1 12 HELIX 28 AD1 THR B 203 SER B 212 1 10 HELIX 29 AD2 VAL B 230 LYS B 244 1 15 HELIX 30 AD3 ASP B 261 LEU B 265 5 5 HELIX 31 AD4 GLY B 383 SER B 390 1 8 HELIX 32 AD5 SER B 394 ASP B 396 5 3 HELIX 33 AD6 LEU B 411 THR B 420 1 10 SHEET 1 AA1 6 GLU A 64 THR A 65 0 SHEET 2 AA1 6 VAL A 50 ALA A 52 1 N VAL A 50 O GLU A 64 SHEET 3 AA1 6 ILE A 98 ILE A 100 1 O ILE A 99 N LEU A 51 SHEET 4 AA1 6 MET A 133 PHE A 135 1 O ILE A 134 N ILE A 100 SHEET 5 AA1 6 LEU A 23 GLY A 27 1 N ILE A 25 O PHE A 135 SHEET 6 AA1 6 ILE A 177 PHE A 179 1 O ILE A 177 N PHE A 24 SHEET 1 AA2 4 ALA A 357 THR A 359 0 SHEET 2 AA2 4 ILE A 225 THR A 228 1 N TYR A 226 O ILE A 358 SHEET 3 AA2 4 VAL A 371 ILE A 373 1 O ILE A 372 N ILE A 225 SHEET 4 AA2 4 ILE A 398 LEU A 400 1 O ILE A 399 N ILE A 373 SHEET 1 AA3 2 TYR A 250 ASN A 253 0 SHEET 2 AA3 2 ASN A 270 LEU A 273 -1 O LEU A 273 N TYR A 250 SHEET 1 AA4 3 THR A 255 GLY A 258 0 SHEET 2 AA4 3 GLU A 342 GLN A 349 -1 O THR A 348 N THR A 255 SHEET 3 AA4 3 PHE A 323 LYS A 329 -1 N TRP A 325 O TYR A 347 SHEET 1 AA5 5 VAL A 318 ILE A 320 0 SHEET 2 AA5 5 ILE A 307 ALA A 311 -1 N ILE A 308 O ILE A 320 SHEET 3 AA5 5 ILE A 295 PHE A 302 -1 N ASN A 300 O GLU A 309 SHEET 4 AA5 5 GLN A 278 LEU A 281 -1 N VAL A 279 O GLY A 296 SHEET 5 AA5 5 LEU A 352 LEU A 354 -1 O LYS A 353 N MET A 280 SHEET 1 AA6 5 LEU B 23 PHE B 24 0 SHEET 2 AA6 5 LYS B 132 PHE B 135 1 O MET B 133 N LEU B 23 SHEET 3 AA6 5 THR B 97 ILE B 100 1 N ILE B 100 O ILE B 134 SHEET 4 AA6 5 VAL B 50 ALA B 52 1 N LEU B 51 O ILE B 99 SHEET 5 AA6 5 GLU B 64 THR B 65 1 O GLU B 64 N VAL B 50 SHEET 1 AA7 2 THR B 26 GLY B 27 0 SHEET 2 AA7 2 GLU B 178 PHE B 179 1 O PHE B 179 N THR B 26 SHEET 1 AA8 4 ALA B 357 THR B 359 0 SHEET 2 AA8 4 ILE B 225 THR B 228 1 N TYR B 226 O ILE B 358 SHEET 3 AA8 4 VAL B 371 ILE B 373 1 O ILE B 372 N ILE B 225 SHEET 4 AA8 4 ILE B 398 LEU B 400 1 O ILE B 399 N ILE B 373 SHEET 1 AA9 2 LEU B 249 ASN B 253 0 SHEET 2 AA9 2 ASN B 270 LYS B 274 -1 O LEU B 273 N TYR B 250 SHEET 1 AB1 3 THR B 255 GLY B 258 0 SHEET 2 AB1 3 LEU B 340 GLN B 349 -1 O SER B 346 N LYS B 257 SHEET 3 AB1 3 PHE B 323 THR B 331 -1 N TRP B 325 O TYR B 347 SHEET 1 AB2 5 ILE B 317 ILE B 320 0 SHEET 2 AB2 5 ILE B 307 LEU B 312 -1 N ILE B 308 O ILE B 320 SHEET 3 AB2 5 ILE B 295 PHE B 302 -1 N ASN B 300 O GLU B 309 SHEET 4 AB2 5 GLN B 278 LEU B 281 -1 N VAL B 279 O GLY B 296 SHEET 5 AB2 5 LEU B 352 LEU B 354 -1 O LYS B 353 N MET B 280 CRYST1 143.797 151.376 51.857 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019284 0.00000