HEADER TRANSFERASE 15-NOV-22 8BOD TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 COMPOUND 20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROPSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.LINHARD,K.WITT,S.GANDE,J.WOLLENHAUPT,F.LENNARTZ,M.S.WEISS, AUTHOR 2 H.SCHWALBE REVDAT 6 07-FEB-24 8BOD 1 REMARK REVDAT 5 03-MAY-23 8BOD 1 JRNL REVDAT 4 05-APR-23 8BOD 1 JRNL REVDAT 3 22-MAR-23 8BOD 1 JRNL REVDAT 2 15-MAR-23 8BOD 1 JRNL REVDAT 1 08-MAR-23 8BOD 0 JRNL AUTH A.TROSTER,M.DIPRIMA,N.JORES,D.KUDLINZKI,S.SREERAMULU, JRNL AUTH 2 S.L.GANDE,V.LINHARD,D.LUDIG,A.SCHUG,K.SAXENA,M.REINECKE, JRNL AUTH 3 S.HEINZLMEIR,M.S.LEISEGANG,J.WOLLENHAUPT,F.LENNARTZ, JRNL AUTH 4 M.S.WEISS,B.KUSTER,G.TOSATO,H.SCHWALBE JRNL TITL OPTIMIZATION OF THE LEAD COMPOUND NVP-BHG712 AS A COLORECTAL JRNL TITL 2 CANCER INHIBITOR. JRNL REF CHEMISTRY V. 29 03967 2023 JRNL REFN ISSN 0947-6539 JRNL PMID 36799129 JRNL DOI 10.1002/CHEM.202203967 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4000 - 3.7000 0.99 2703 141 0.1442 0.1635 REMARK 3 2 3.6900 - 2.9300 1.00 2702 142 0.1396 0.1570 REMARK 3 3 2.9300 - 2.5600 1.00 2680 140 0.1471 0.1822 REMARK 3 4 2.5600 - 2.3300 1.00 2689 141 0.1395 0.1642 REMARK 3 5 2.3300 - 2.1600 1.00 2664 139 0.1377 0.1717 REMARK 3 6 2.1600 - 2.0300 1.00 2680 140 0.1465 0.1907 REMARK 3 7 2.0300 - 1.9300 1.00 2686 141 0.1591 0.1598 REMARK 3 8 1.9300 - 1.8500 1.00 2689 140 0.1666 0.1928 REMARK 3 9 1.8500 - 1.7800 1.00 2701 142 0.1810 0.1831 REMARK 3 10 1.7800 - 1.7200 1.00 2651 138 0.1996 0.2373 REMARK 3 11 1.7200 - 1.6600 1.00 2689 141 0.2104 0.2348 REMARK 3 12 1.6600 - 1.6100 1.00 2666 140 0.2269 0.2713 REMARK 3 13 1.6100 - 1.5700 1.00 2670 139 0.2397 0.2878 REMARK 3 14 1.5700 - 1.5300 1.00 2683 141 0.2521 0.2826 REMARK 3 15 1.5300 - 1.5000 0.97 2575 134 0.2766 0.3043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.161 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.509 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2319 REMARK 3 ANGLE : 0.915 3149 REMARK 3 CHIRALITY : 0.066 337 REMARK 3 PLANARITY : 0.016 445 REMARK 3 DIHEDRAL : 12.265 902 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.3731 -31.3709 79.5404 REMARK 3 T TENSOR REMARK 3 T11: 0.2471 T22: 0.1989 REMARK 3 T33: 0.3255 T12: -0.0194 REMARK 3 T13: 0.0047 T23: -0.1092 REMARK 3 L TENSOR REMARK 3 L11: 4.3196 L22: 2.4828 REMARK 3 L33: 3.1032 L12: 1.4163 REMARK 3 L13: 1.5508 L23: -0.7956 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: -0.1436 S13: 0.2644 REMARK 3 S21: -0.3446 S22: 0.2705 S23: -0.2492 REMARK 3 S31: 0.1023 S32: 0.1735 S33: -0.3233 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 619 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): -81.5229 -27.8508 83.3763 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.2256 REMARK 3 T33: 0.3987 T12: -0.0020 REMARK 3 T13: 0.0369 T23: -0.1195 REMARK 3 L TENSOR REMARK 3 L11: 4.8144 L22: 3.8755 REMARK 3 L33: 7.0081 L12: 0.5815 REMARK 3 L13: 0.0977 L23: -1.4032 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.1175 S13: -0.2189 REMARK 3 S21: -0.0075 S22: 0.2337 S23: -0.4975 REMARK 3 S31: 0.2033 S32: 0.2946 S33: -0.2967 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 641 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.4678 -27.7498 91.7345 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.1338 REMARK 3 T33: 0.2664 T12: 0.0188 REMARK 3 T13: 0.0126 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.6444 L22: 2.8465 REMARK 3 L33: 4.4282 L12: 0.1392 REMARK 3 L13: 0.2259 L23: -2.4428 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.1216 S13: 0.0361 REMARK 3 S21: 0.1870 S22: 0.2591 S23: 0.2262 REMARK 3 S31: -0.0920 S32: 0.0149 S33: -0.2141 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.7323 -16.1186 82.8499 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1401 REMARK 3 T33: 0.1324 T12: 0.0010 REMARK 3 T13: 0.0059 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.7034 L22: 1.3471 REMARK 3 L33: 0.5417 L12: 0.3542 REMARK 3 L13: -0.1343 L23: -0.2524 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0432 S13: -0.1138 REMARK 3 S21: -0.0847 S22: 0.0019 S23: -0.0058 REMARK 3 S31: 0.1390 S32: 0.0342 S33: 0.0087 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 755 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.9730 -6.7873 87.2121 REMARK 3 T TENSOR REMARK 3 T11: 0.0763 T22: 0.1164 REMARK 3 T33: 0.0973 T12: -0.0085 REMARK 3 T13: 0.0059 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.8975 L22: 1.1518 REMARK 3 L33: 1.3306 L12: 0.1186 REMARK 3 L13: -0.5144 L23: 0.0874 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0349 S13: -0.0582 REMARK 3 S21: -0.0007 S22: 0.0110 S23: 0.0308 REMARK 3 S31: 0.0152 S32: -0.0230 S33: -0.0014 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 756 THROUGH 822 ) REMARK 3 ORIGIN FOR THE GROUP (A): -80.2278 -4.6015 99.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.1229 REMARK 3 T33: 0.1085 T12: 0.0061 REMARK 3 T13: 0.0054 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.1265 L22: 0.6162 REMARK 3 L33: 1.4132 L12: 0.2032 REMARK 3 L13: -0.0600 L23: -0.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.1056 S13: -0.0612 REMARK 3 S21: 0.0313 S22: -0.0004 S23: -0.0900 REMARK 3 S31: 0.1037 S32: 0.0572 S33: 0.0207 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 823 THROUGH 863 ) REMARK 3 ORIGIN FOR THE GROUP (A): -80.2713 5.2164 100.7681 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1262 REMARK 3 T33: 0.1181 T12: 0.0081 REMARK 3 T13: 0.0016 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.8497 L22: 1.4916 REMARK 3 L33: 2.0544 L12: -0.2154 REMARK 3 L13: 0.7927 L23: -0.6165 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.1570 S13: 0.0570 REMARK 3 S21: 0.1200 S22: -0.0102 S23: -0.0659 REMARK 3 S31: -0.0803 S32: 0.0272 S33: 0.0520 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 864 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.4546 7.8258 84.1145 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1113 REMARK 3 T33: 0.1233 T12: 0.0100 REMARK 3 T13: -0.0083 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.8702 L22: 4.3901 REMARK 3 L33: 5.3233 L12: 2.0316 REMARK 3 L13: -2.1386 L23: -3.4550 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.1371 S13: 0.1584 REMARK 3 S21: -0.1128 S22: 0.0804 S23: 0.1785 REMARK 3 S31: -0.1124 S32: -0.2046 S33: -0.0853 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.4874 14.7113 91.3179 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1981 REMARK 3 T33: 0.3292 T12: -0.0027 REMARK 3 T13: -0.0088 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 8.6496 L22: 2.1460 REMARK 3 L33: 1.6376 L12: 1.2316 REMARK 3 L13: 0.0477 L23: -0.1008 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.5227 S13: -0.0875 REMARK 3 S21: 0.1129 S22: -0.0589 S23: -0.4901 REMARK 3 S31: 0.0205 S32: 0.2618 S33: 0.0288 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42245 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.820 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37,5 % PRECIPITANT MIX 4 (25% (V/V) REMARK 280 HEXYLENE GLYCOL, 25% (W/V) POLY(ETHYLENE GLYCOL) 1000, 25% (W/V) REMARK 280 POLY(ETHYLENE GLYCOL) 3350), 0.1M MES PH 6.0, 0.1 M AMINO ACIDS REMARK 280 MIX (0.2 M DL-ALANINE, 0.2M DL-GLUTAMIC ACID MONOHYDRATE, 0.2M REMARK 280 DL-LYSINE MONOHYDROCHLORIDE, 0.2M DL-SERINE, 0.2M GLYCINE), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.62500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 ALA A 600 REMARK 465 VAL A 601 REMARK 465 LEU A 602 REMARK 465 LYS A 603 REMARK 465 PHE A 604 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 LYS A 639 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 LYS A 778 REMARK 465 ILE A 779 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 677 O HOH A 1108 1.50 REMARK 500 H ASN A 697 O HOH A 1102 1.53 REMARK 500 HH21 ARG A 738 O HOH A 1103 1.60 REMARK 500 O HOH A 1266 O HOH A 1272 1.81 REMARK 500 O HOH A 1244 O HOH A 1353 1.83 REMARK 500 O HOH A 1249 O HOH A 1311 1.86 REMARK 500 O HOH A 1273 O HOH A 1354 1.86 REMARK 500 OE2 GLU A 696 O HOH A 1101 1.86 REMARK 500 O HOH A 1301 O HOH A 1360 1.89 REMARK 500 O HOH A 1345 O HOH A 1370 1.90 REMARK 500 O HOH A 1131 O HOH A 1133 1.99 REMARK 500 N GLU A 696 O HOH A 1102 2.02 REMARK 500 O HOH A 1325 O HOH A 1369 2.09 REMARK 500 O HOH A 1329 O HOH A 1355 2.10 REMARK 500 NH2 ARG A 738 O HOH A 1103 2.10 REMARK 500 N PRO A 780 O HOH A 1104 2.17 REMARK 500 O HOH A 1177 O HOH A 1347 2.17 REMARK 500 O HOH A 1362 O HOH A 1394 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 624 66.16 -150.49 REMARK 500 ARG A 738 -18.64 81.46 REMARK 500 ARG A 738 -17.34 81.46 REMARK 500 TYR A 791 17.38 -146.81 REMARK 500 TRP A 819 -125.39 48.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 782 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1398 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1399 DISTANCE = 6.06 ANGSTROMS DBREF 8BOD A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 8BOD GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET QTX A1001 54 HETNAM QTX ~{N}-[3,5-BIS(CHLORANYL)PHENYL]-4-METHYL-3-[(1-METHYL- HETNAM 2 QTX 6-PYRIDIN-3-YL-PYRAZOLO[3,4-D]PYRIMIDIN-4-YL) HETNAM 3 QTX AMINO]BENZAMIDE FORMUL 2 QTX C25 H19 CL2 N7 O FORMUL 3 HOH *299(H2 O) HELIX 1 AA1 HIS A 609 SER A 611 5 3 HELIX 2 AA2 THR A 653 PHE A 670 1 18 HELIX 3 AA3 ALA A 699 LYS A 707 1 9 HELIX 4 AA4 SER A 712 MET A 733 1 22 HELIX 5 AA5 ALA A 741 ARG A 743 5 3 HELIX 6 AA6 PRO A 780 THR A 784 5 5 HELIX 7 AA7 ALA A 785 ARG A 792 1 8 HELIX 8 AA8 THR A 795 THR A 812 1 18 HELIX 9 AA9 SER A 822 ASP A 832 1 11 HELIX 10 AB1 PRO A 843 TRP A 854 1 12 HELIX 11 AB2 GLU A 857 ARG A 861 5 5 HELIX 12 AB3 LYS A 863 ALA A 877 1 15 HELIX 13 AB4 PRO A 878 LYS A 882 5 5 SHEET 1 AA1 5 VAL A 613 GLY A 622 0 SHEET 2 AA1 5 GLY A 625 LEU A 632 -1 O VAL A 627 N ILE A 619 SHEET 3 AA1 5 VAL A 641 LEU A 648 -1 O VAL A 641 N LEU A 632 SHEET 4 AA1 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N GLY A 680 O ILE A 691 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 0.47 CRYST1 32.720 107.250 40.550 90.00 108.73 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030562 0.000000 0.010363 0.00000 SCALE2 0.000000 0.009324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026040 0.00000