HEADER TRANSFERASE 15-NOV-22 8BOK TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 COMPOUND 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.LINHARD,K.WITT,S.GANDE,J.WOLLENHAUPT,F.LENNARTZ,M.S.WEISS, AUTHOR 2 H.SCHWALBE REVDAT 6 07-FEB-24 8BOK 1 REMARK REVDAT 5 03-MAY-23 8BOK 1 JRNL REVDAT 4 05-APR-23 8BOK 1 JRNL REVDAT 3 22-MAR-23 8BOK 1 JRNL REVDAT 2 15-MAR-23 8BOK 1 JRNL REVDAT 1 08-MAR-23 8BOK 0 JRNL AUTH A.TROSTER,M.DIPRIMA,N.JORES,D.KUDLINZKI,S.SREERAMULU, JRNL AUTH 2 S.L.GANDE,V.LINHARD,D.LUDIG,A.SCHUG,K.SAXENA,M.REINECKE, JRNL AUTH 3 S.HEINZLMEIR,M.S.LEISEGANG,J.WOLLENHAUPT,F.LENNARTZ, JRNL AUTH 4 M.S.WEISS,B.KUSTER,G.TOSATO,H.SCHWALBE JRNL TITL OPTIMIZATION OF THE LEAD COMPOUND NVP-BHG712 AS A COLORECTAL JRNL TITL 2 CANCER INHIBITOR. JRNL REF CHEMISTRY V. 29 03967 2023 JRNL REFN ISSN 0947-6539 JRNL PMID 36799129 JRNL DOI 10.1002/CHEM.202203967 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0700 - 3.8600 1.00 3000 159 0.1771 0.2345 REMARK 3 2 3.8600 - 3.0600 1.00 2845 149 0.2032 0.2436 REMARK 3 3 3.0600 - 2.6700 1.00 2819 149 0.2424 0.3026 REMARK 3 4 2.6700 - 2.4300 1.00 2787 146 0.2446 0.2570 REMARK 3 5 2.4300 - 2.2600 1.00 2772 146 0.2603 0.3013 REMARK 3 6 2.2600 - 2.1200 1.00 2775 146 0.2958 0.3122 REMARK 3 7 2.1200 - 2.0200 0.98 2717 143 0.3321 0.3447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.297 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2328 REMARK 3 ANGLE : 0.758 3146 REMARK 3 CHIRALITY : 0.045 339 REMARK 3 PLANARITY : 0.010 438 REMARK 3 DIHEDRAL : 12.986 900 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 605:639) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6524 32.7054 2.2626 REMARK 3 T TENSOR REMARK 3 T11: 1.1099 T22: 0.7182 REMARK 3 T33: 0.7208 T12: 0.3387 REMARK 3 T13: -0.1757 T23: -0.0918 REMARK 3 L TENSOR REMARK 3 L11: 6.7546 L22: 6.5168 REMARK 3 L33: 2.2007 L12: -2.0610 REMARK 3 L13: -2.8057 L23: 1.8427 REMARK 3 S TENSOR REMARK 3 S11: 0.7272 S12: 0.8883 S13: -0.2954 REMARK 3 S21: -1.7645 S22: -1.3559 S23: 0.8373 REMARK 3 S31: -1.0904 S32: -0.8070 S33: 0.7647 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 640:682) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9207 23.8100 9.0694 REMARK 3 T TENSOR REMARK 3 T11: 0.4679 T22: 0.4226 REMARK 3 T33: 0.8166 T12: 0.0691 REMARK 3 T13: 0.0150 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 4.5157 L22: 4.5827 REMARK 3 L33: 7.1752 L12: -0.1518 REMARK 3 L13: -0.6245 L23: -1.6566 REMARK 3 S TENSOR REMARK 3 S11: 0.3592 S12: 0.3457 S13: 0.1196 REMARK 3 S21: -0.2209 S22: -0.0700 S23: 1.4592 REMARK 3 S31: -0.0404 S32: -0.9905 S33: -0.2667 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 683:764) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6950 18.2012 9.7069 REMARK 3 T TENSOR REMARK 3 T11: 0.4542 T22: 0.2838 REMARK 3 T33: 0.3793 T12: 0.0251 REMARK 3 T13: 0.1459 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.5124 L22: 2.8976 REMARK 3 L33: 3.0292 L12: -0.7202 REMARK 3 L13: 0.3403 L23: 0.6880 REMARK 3 S TENSOR REMARK 3 S11: 0.3296 S12: 0.0236 S13: 0.5027 REMARK 3 S21: -0.5954 S22: -0.2592 S23: 0.0640 REMARK 3 S31: -0.3154 S32: -0.0706 S33: -0.0540 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 765:777) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9306 1.4992 3.0388 REMARK 3 T TENSOR REMARK 3 T11: 0.3793 T22: 0.5907 REMARK 3 T33: 0.3285 T12: 0.0753 REMARK 3 T13: 0.0480 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.2904 L22: 7.1210 REMARK 3 L33: 3.1681 L12: 1.0907 REMARK 3 L13: 1.9130 L23: -2.2284 REMARK 3 S TENSOR REMARK 3 S11: -0.2332 S12: 0.6778 S13: -0.4779 REMARK 3 S21: -0.0659 S22: 0.1560 S23: -0.2835 REMARK 3 S31: 0.2755 S32: 0.4509 S33: 0.1915 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 778:818) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0349 2.9367 12.5498 REMARK 3 T TENSOR REMARK 3 T11: 0.2888 T22: 0.3418 REMARK 3 T33: 0.2090 T12: 0.0021 REMARK 3 T13: -0.0124 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 5.7093 L22: 4.0752 REMARK 3 L33: 2.2928 L12: 1.7882 REMARK 3 L13: -1.9006 L23: -0.0284 REMARK 3 S TENSOR REMARK 3 S11: 0.6982 S12: -0.1962 S13: 0.0573 REMARK 3 S21: 0.0476 S22: -0.2777 S23: 0.1275 REMARK 3 S31: -0.3530 S32: -0.1574 S33: -0.3569 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 819:831) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1617 -7.9329 6.3536 REMARK 3 T TENSOR REMARK 3 T11: 0.4172 T22: 0.4219 REMARK 3 T33: 0.5275 T12: -0.0429 REMARK 3 T13: -0.1721 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 5.2889 L22: 9.6531 REMARK 3 L33: 3.7454 L12: -4.1584 REMARK 3 L13: 2.5149 L23: -0.1079 REMARK 3 S TENSOR REMARK 3 S11: 0.8176 S12: 0.0254 S13: -0.7359 REMARK 3 S21: -0.4044 S22: 0.1177 S23: 0.2215 REMARK 3 S31: 0.3433 S32: 0.2693 S33: -0.5993 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 832:875) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9777 3.5016 19.3824 REMARK 3 T TENSOR REMARK 3 T11: 0.3238 T22: 0.4187 REMARK 3 T33: 0.2352 T12: -0.0984 REMARK 3 T13: -0.0358 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 4.6033 L22: 4.0714 REMARK 3 L33: 2.2100 L12: 2.0481 REMARK 3 L13: -0.3964 L23: 0.1489 REMARK 3 S TENSOR REMARK 3 S11: 0.6239 S12: -0.6469 S13: -0.1761 REMARK 3 S21: 0.4037 S22: -0.3358 S23: -0.0566 REMARK 3 S31: 0.0095 S32: 0.1390 S33: -0.2661 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 876:890) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2878 13.9495 12.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.4930 T22: 0.5066 REMARK 3 T33: 0.6838 T12: -0.0012 REMARK 3 T13: 0.1546 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 3.8989 L22: 6.3991 REMARK 3 L33: 6.7870 L12: 1.1963 REMARK 3 L13: 3.0403 L23: 1.0952 REMARK 3 S TENSOR REMARK 3 S11: 0.2991 S12: -0.2273 S13: 0.5511 REMARK 3 S21: -0.2763 S22: -0.7868 S23: -0.7270 REMARK 3 S31: -1.1936 S32: -0.0863 S33: 0.5785 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 47.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.68 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5IA5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37,5 % PRECIPITANT MIX 4 (25% (V/V) REMARK 280 HEXYLENE GLYCOL, 25% (W/V) POLY(ETHYLENE GLYCOL) 1000, 25% (W/V) REMARK 280 POLY(ETHYLENE GLYCOL) 3350), 0.1M BUFFER SYSTEM 3 PH 8.5 (1M REMARK 280 BICINE, 1M TRIZMA BASE), 0.175 M CARBOXYLIC ACIDS MIX (0.2M REMARK 280 AMMONIUM ACETATE, 0.2M POTASSIUM SODIUM TARTRATE TETRAHYDRATE, REMARK 280 0.2M SODIUM CITRATE TRIBASIC DIHYDRATE, 0.2M SODIUM FORMATE, REMARK 280 0.2M SODIUM OXAMATE), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.07000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1148 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 ALA A 600 REMARK 465 VAL A 601 REMARK 465 LEU A 602 REMARK 465 LYS A 603 REMARK 465 PHE A 604 REMARK 465 GLU A 623 REMARK 465 PHE A 624 REMARK 465 GLY A 625 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 VAL A 891 REMARK 465 SER A 892 REMARK 465 ILE A 893 REMARK 465 ARG A 894 REMARK 465 LEU A 895 REMARK 465 PRO A 896 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 734 O HOH A 1103 1.51 REMARK 500 H MET A 688 O HOH A 1110 1.52 REMARK 500 H LEU A 764 O HOH A 1104 1.58 REMARK 500 ND1 HIS A 609 O HOH A 1101 1.92 REMARK 500 N THR A 605 O HOH A 1102 2.05 REMARK 500 O HOH A 1105 O HOH A 1121 2.05 REMARK 500 ND2 ASN A 734 O HOH A 1103 2.05 REMARK 500 CE1 HIS A 609 O HOH A 1101 2.10 REMARK 500 O LEU A 764 O HOH A 1104 2.11 REMARK 500 OE1 GLU A 825 O HOH A 1105 2.12 REMARK 500 O HOH A 1103 O HOH A 1175 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 616 -73.42 -133.80 REMARK 500 ALA A 650 3.12 -65.33 REMARK 500 ARG A 738 -16.97 77.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BOK A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 8BOK GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET R0X A1001 62 HETNAM R0X ~{N}-(3,5-DIMETHOXYPHENYL)-4-METHYL-3-[(1-METHYL-6- HETNAM 2 R0X PYRIDIN-3-YL-PYRAZOLO[3,4-D]PYRIMIDIN-4-YL) HETNAM 3 R0X AMINO]BENZAMIDE FORMUL 2 R0X C27 H25 N7 O3 FORMUL 3 HOH *105(H2 O) HELIX 1 AA1 HIS A 609 SER A 611 5 3 HELIX 2 AA2 THR A 653 GLY A 668 1 16 HELIX 3 AA3 ALA A 699 LYS A 707 1 9 HELIX 4 AA4 SER A 712 MET A 733 1 22 HELIX 5 AA5 ALA A 741 ARG A 743 5 3 HELIX 6 AA6 GLY A 759 VAL A 763 5 5 HELIX 7 AA7 PRO A 780 THR A 784 5 5 HELIX 8 AA8 ALA A 785 ARG A 792 1 8 HELIX 9 AA9 THR A 795 THR A 812 1 18 HELIX 10 AB1 SER A 822 ASP A 832 1 11 HELIX 11 AB2 PRO A 843 TRP A 854 1 12 HELIX 12 AB3 GLU A 857 ARG A 861 5 5 HELIX 13 AB4 LYS A 863 ALA A 877 1 15 HELIX 14 AB5 PRO A 878 LYS A 882 5 5 HELIX 15 AB6 THR A 883 PHE A 887 5 5 SHEET 1 AA1 5 VAL A 613 GLY A 620 0 SHEET 2 AA1 5 VAL A 627 LYS A 633 -1 O LYS A 629 N LYS A 617 SHEET 3 AA1 5 GLU A 640 THR A 647 -1 O VAL A 641 N LEU A 632 SHEET 4 AA1 5 MET A 689 GLU A 693 -1 O THR A 692 N ALA A 644 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N ILE A 682 O MET A 689 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 7.52 CRYST1 72.140 123.970 33.880 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013862 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029516 0.00000