HEADER TRANSFERASE 15-NOV-22 8BOM TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 COMPOUND 14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.LINHARD,K.WITT,S.GANDE,J.WOLLENHAUPT,F.LENNARTZ,M.S.WEISS, AUTHOR 2 H.SCHWALBE REVDAT 6 07-FEB-24 8BOM 1 REMARK REVDAT 5 03-MAY-23 8BOM 1 JRNL REVDAT 4 05-APR-23 8BOM 1 JRNL REVDAT 3 22-MAR-23 8BOM 1 JRNL REVDAT 2 15-MAR-23 8BOM 1 JRNL REVDAT 1 08-MAR-23 8BOM 0 JRNL AUTH A.TROSTER,M.DIPRIMA,N.JORES,D.KUDLINZKI,S.SREERAMULU, JRNL AUTH 2 S.L.GANDE,V.LINHARD,D.LUDIG,A.SCHUG,K.SAXENA,M.REINECKE, JRNL AUTH 3 S.HEINZLMEIR,M.S.LEISEGANG,J.WOLLENHAUPT,F.LENNARTZ, JRNL AUTH 4 M.S.WEISS,B.KUSTER,G.TOSATO,H.SCHWALBE JRNL TITL OPTIMIZATION OF THE LEAD COMPOUND NVP-BHG712 AS A COLORECTAL JRNL TITL 2 CANCER INHIBITOR. JRNL REF CHEMISTRY V. 29 03967 2023 JRNL REFN ISSN 0947-6539 JRNL PMID 36799129 JRNL DOI 10.1002/CHEM.202203967 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 94901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1200 - 2.7600 0.98 6480 147 0.1415 0.1580 REMARK 3 2 2.7600 - 2.1900 0.98 6460 146 0.1425 0.1419 REMARK 3 3 2.1900 - 1.9100 0.96 6274 142 0.1364 0.1380 REMARK 3 4 1.9100 - 1.7400 0.97 6408 145 0.1416 0.1732 REMARK 3 5 1.7400 - 1.6100 0.97 6343 144 0.1516 0.1603 REMARK 3 6 1.6100 - 1.5200 0.97 6376 144 0.1560 0.1626 REMARK 3 7 1.5200 - 1.4400 0.94 6082 138 0.1719 0.1975 REMARK 3 8 1.4400 - 1.3800 0.96 6271 142 0.1965 0.2339 REMARK 3 9 1.3800 - 1.3300 0.95 6224 141 0.2169 0.2237 REMARK 3 10 1.3300 - 1.2800 0.94 6119 138 0.2251 0.2649 REMARK 3 11 1.2800 - 1.2400 0.94 6121 139 0.2403 0.2753 REMARK 3 12 1.2400 - 1.2100 0.92 5980 135 0.2637 0.2552 REMARK 3 13 1.2100 - 1.1700 0.93 6091 138 0.2794 0.2792 REMARK 3 14 1.1700 - 1.1400 0.91 5929 134 0.2927 0.3122 REMARK 3 15 1.1400 - 1.1200 0.87 5642 128 0.3179 0.3137 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.127 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2380 REMARK 3 ANGLE : 1.124 3235 REMARK 3 CHIRALITY : 0.080 339 REMARK 3 PLANARITY : 0.016 494 REMARK 3 DIHEDRAL : 12.634 952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.5424 -29.4451 81.7379 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.1406 REMARK 3 T33: 0.2529 T12: 0.0141 REMARK 3 T13: 0.0272 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 5.4583 L22: 7.0658 REMARK 3 L33: 4.2596 L12: 2.6783 REMARK 3 L13: 1.2586 L23: 0.6700 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.0231 S13: -0.0551 REMARK 3 S21: -0.4536 S22: 0.2481 S23: -0.5339 REMARK 3 S31: 0.0057 S32: 0.2918 S33: -0.1700 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 641 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -88.9320 -27.1302 91.4531 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.0761 REMARK 3 T33: 0.1556 T12: -0.0114 REMARK 3 T13: -0.0302 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.2202 L22: 6.2621 REMARK 3 L33: 6.9270 L12: -0.1170 REMARK 3 L13: 0.4874 L23: -4.6369 REMARK 3 S TENSOR REMARK 3 S11: -0.1282 S12: -0.1272 S13: -0.0336 REMARK 3 S21: 0.0506 S22: 0.2888 S23: 0.2267 REMARK 3 S31: 0.0147 S32: -0.0815 S33: -0.1338 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.2487 -16.2461 82.5372 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.1541 REMARK 3 T33: 0.0906 T12: -0.0019 REMARK 3 T13: -0.0020 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.7119 L22: 2.2247 REMARK 3 L33: 0.3214 L12: 0.7036 REMARK 3 L13: -0.1273 L23: -0.4983 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.0716 S13: -0.1287 REMARK 3 S21: -0.1597 S22: 0.0363 S23: -0.0604 REMARK 3 S31: 0.1295 S32: 0.0396 S33: 0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 843 ) REMARK 3 ORIGIN FOR THE GROUP (A): -80.6836 -3.5290 94.6729 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.1196 REMARK 3 T33: 0.0653 T12: 0.0065 REMARK 3 T13: -0.0009 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.7504 L22: 0.6262 REMARK 3 L33: 0.7857 L12: 0.0697 REMARK 3 L13: 0.1904 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.0532 S13: -0.0218 REMARK 3 S21: 0.0395 S22: 0.0039 S23: -0.0311 REMARK 3 S31: 0.0298 S32: 0.0268 S33: 0.0048 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 844 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.9484 7.3816 92.0578 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.0865 REMARK 3 T33: 0.0780 T12: 0.0110 REMARK 3 T13: -0.0048 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.8406 L22: 1.8612 REMARK 3 L33: 2.4654 L12: 0.0034 REMARK 3 L13: 0.7834 L23: -0.8901 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: -0.0679 S13: 0.1065 REMARK 3 S21: 0.0251 S22: 0.0045 S23: 0.0547 REMARK 3 S31: -0.1295 S32: -0.1106 S33: -0.0108 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.9201 14.9054 90.6262 REMARK 3 T TENSOR REMARK 3 T11: 0.1948 T22: 0.2080 REMARK 3 T33: 0.2996 T12: 0.0056 REMARK 3 T13: -0.0055 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.6658 L22: 2.7374 REMARK 3 L33: 1.8030 L12: 1.3267 REMARK 3 L13: 0.1109 L23: 0.0979 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.4167 S13: -0.0419 REMARK 3 S21: 0.0369 S22: -0.0532 S23: -0.5556 REMARK 3 S31: 0.0479 S32: 0.2010 S33: 0.0763 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94907 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 38.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 6.970 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37,5 % PRECIPITANT MIX 4 (25% (V/V) REMARK 280 HEXYLENE GLYCOL, 25% (W/V) POLY(ETHYLENE GLYCOL) 1000, 25% (W/V) REMARK 280 POLY(ETHYLENE GLYCOL) 3350), 0.1M BICIN PH 7.6, 0.1 M AMINO REMARK 280 ACIDS MIX (0.2 M DL-ALANINE, 0.2M DL-GLUTAMIC ACID MONOHYDRATE, REMARK 280 0.2M DL-LYSINE MONOHYDROCHLORIDE, 0.2M DL-SERINE, 0.2M GLYCINE), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 ALA A 600 REMARK 465 VAL A 601 REMARK 465 LEU A 602 REMARK 465 LYS A 603 REMARK 465 PHE A 604 REMARK 465 THR A 634 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 LYS A 639 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 LYS A 778 REMARK 465 ILE A 779 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1169 O HOH A 1190 1.78 REMARK 500 OD1 ASN A 732 O HOH A 1101 2.06 REMARK 500 OD1 ASP A 888 O HOH A 1102 2.14 REMARK 500 O HOH A 1282 O HOH A 1294 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 701 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 616 -55.08 -120.42 REMARK 500 PHE A 624 67.07 -151.40 REMARK 500 ARG A 738 -17.68 79.97 REMARK 500 TYR A 791 19.10 -145.26 REMARK 500 TRP A 819 -128.69 49.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BOM A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 8BOM GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET QU6 A1001 116 HETNAM QU6 ~{N}-(3-METHOXYPHENYL)-4-METHYL-3-[(1-METHYL-6-PYRIDIN- HETNAM 2 QU6 3-YL-PYRAZOLO[3,4-D]PYRIMIDIN-4-YL)AMINO]BENZAMIDE FORMUL 2 QU6 C26 H23 N7 O2 FORMUL 3 HOH *217(H2 O) HELIX 1 AA1 HIS A 609 SER A 611 5 3 HELIX 2 AA2 THR A 653 PHE A 670 1 18 HELIX 3 AA3 ALA A 699 GLU A 706 1 8 HELIX 4 AA4 SER A 712 MET A 733 1 22 HELIX 5 AA5 ALA A 741 ARG A 743 5 3 HELIX 6 AA6 PRO A 780 THR A 784 5 5 HELIX 7 AA7 ALA A 785 ARG A 792 1 8 HELIX 8 AA8 THR A 795 THR A 812 1 18 HELIX 9 AA9 SER A 822 GLY A 833 1 12 HELIX 10 AB1 PRO A 843 TRP A 854 1 12 HELIX 11 AB2 GLU A 857 ARG A 861 5 5 HELIX 12 AB3 LYS A 863 ALA A 877 1 15 HELIX 13 AB4 PRO A 878 LYS A 882 5 5 SHEET 1 AA1 5 VAL A 613 ALA A 621 0 SHEET 2 AA1 5 GLU A 626 LEU A 632 -1 O VAL A 627 N ILE A 619 SHEET 3 AA1 5 VAL A 641 LEU A 648 -1 O ILE A 645 N TYR A 628 SHEET 4 AA1 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N GLY A 680 O ILE A 691 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 -2.17 CRYST1 32.560 107.000 40.360 90.00 108.56 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030713 0.000000 0.010312 0.00000 SCALE2 0.000000 0.009346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026136 0.00000