HEADER STRUCTURAL PROTEIN 15-NOV-22 8BOO TITLE SPATIALS STRUCTURE OF AMYLOIDOGENIC SEM1(45-67) PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMENOGELIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CANCER/TESTIS ANTIGEN 103,SEMENOGELIN I,SGI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS HIV, SEMENOGELIN 1, SEM1, SEMG1, SEM1(45-67), N-TERMINUS OF SEM1(45- KEYWDS 2 67), AMYLOID, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR D.S.BLOKHIN,D.A.OSETRINA REVDAT 2 31-JAN-24 8BOO 1 REMARK REVDAT 1 18-JAN-23 8BOO 0 JRNL AUTH D.S.BLOKHIN,D.A.OSETRINA JRNL TITL SPATIALS STRUCTURE OF AMYLOIDOGENIC SEM1(45-67) PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BOO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126757. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.1 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM GLY-GLN-HIS-TYR-SER-GLY REMARK 210 -GLN-LYS-GLY-LYS-GLN-GLN-THR-GLU-SER-LYS-GLY-SER-PHE-SER-ILE-GLN- REMARK 210 TYR, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, CCPNMR ANALYSIS, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 58 -108.45 57.31 REMARK 500 1 SER A 62 -56.85 72.35 REMARK 500 2 GLU A 58 -112.02 61.15 REMARK 500 2 SER A 62 -49.41 74.04 REMARK 500 3 GLU A 58 -118.41 56.30 REMARK 500 3 SER A 62 -53.70 71.67 REMARK 500 4 GLU A 58 -104.28 59.23 REMARK 500 4 SER A 62 -48.43 72.01 REMARK 500 5 GLU A 58 -101.80 56.73 REMARK 500 5 SER A 62 -42.28 71.41 REMARK 500 6 GLU A 58 -108.47 56.63 REMARK 500 6 SER A 62 -50.40 74.50 REMARK 500 7 GLU A 58 -110.65 57.70 REMARK 500 7 SER A 62 -47.05 71.50 REMARK 500 8 GLU A 58 -106.48 57.39 REMARK 500 8 SER A 62 -59.26 75.64 REMARK 500 9 TYR A 48 15.00 57.82 REMARK 500 9 GLU A 58 -108.00 54.18 REMARK 500 9 SER A 62 -54.86 74.59 REMARK 500 10 GLU A 58 -111.81 57.97 REMARK 500 10 SER A 62 -48.58 73.38 REMARK 500 11 GLU A 58 -103.18 56.53 REMARK 500 11 SER A 62 -52.60 73.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51673 RELATED DB: BMRB DBREF 8BOO A 45 67 UNP P04279 SEMG1_HUMAN 45 67 SEQRES 1 A 23 GLY GLN HIS TYR SER GLY GLN LYS GLY LYS GLN GLN THR SEQRES 2 A 23 GLU SER LYS GLY SER PHE SER ILE GLN TYR HELIX 1 AA1 THR A 57 SER A 62 5 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1