HEADER TRANSFERASE 16-NOV-22 8BPL TITLE ASPARTATE TRANSCARBAMOYLASE MUTANT (N2045C, R2238C) FROM CHAETOMIUM TITLE 2 THERMOPHILUM CAD-LIKE BOUND TO CARBAMOYL PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBAMOYL-PHOSPHATE SYNTHASE (GLUTAMINE-HYDROLYZING); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: CTHT_0032600; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPIN-M-CTATC2CYS KEYWDS NUCLEOTIDE METABOLISM, DE NOVO PYRIMIDINE SYNTHESIS, CAD, CYSTEINE, KEYWDS 2 DISULFIDE BRIDGE, PROTEIN STABILITY, CROSSLINKING, SUCCINATE, KEYWDS 3 MULTIENZYMATIC PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.DEL CANO-OCHOA,S.RAMON-MAIQUES REVDAT 2 07-FEB-24 8BPL 1 REMARK REVDAT 1 01-FEB-23 8BPL 0 JRNL AUTH F.DEL CANO-OCHOA,A.RUBIO-DEL-CAMPO,S.RAMON-MAIQUES JRNL TITL A TAILORED STRATEGY TO CROSSLINK THE ASPARTATE JRNL TITL 2 TRANSCARBAMOYLASE DOMAIN OF THE MULTIENZYMATIC PROTEIN CAD. JRNL REF MOLECULES V. 28 2023 JRNL REFN ESSN 1420-3049 JRNL PMID 36677714 JRNL DOI 10.3390/MOLECULES28020660 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 63192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.4300 1.00 3020 162 0.1760 0.1823 REMARK 3 2 4.4300 - 3.5100 1.00 2838 166 0.1258 0.1415 REMARK 3 3 3.5100 - 3.0700 1.00 2817 136 0.1315 0.1706 REMARK 3 4 3.0700 - 2.7900 1.00 2761 153 0.1332 0.1780 REMARK 3 5 2.7900 - 2.5900 1.00 2758 166 0.1242 0.1534 REMARK 3 6 2.5900 - 2.4400 1.00 2763 137 0.1143 0.1324 REMARK 3 7 2.4400 - 2.3100 1.00 2730 169 0.1046 0.1490 REMARK 3 8 2.3100 - 2.2100 1.00 2733 147 0.0993 0.1417 REMARK 3 9 2.2100 - 2.1300 1.00 2771 126 0.1118 0.1767 REMARK 3 10 2.1300 - 2.0600 1.00 2735 122 0.1087 0.1477 REMARK 3 11 2.0500 - 1.9900 1.00 2709 148 0.1034 0.1553 REMARK 3 12 1.9900 - 1.9300 1.00 2733 132 0.1082 0.1745 REMARK 3 13 1.9300 - 1.8800 1.00 2731 138 0.1085 0.1670 REMARK 3 14 1.8800 - 1.8400 1.00 2711 123 0.1201 0.1829 REMARK 3 15 1.8400 - 1.8000 1.00 2750 135 0.1580 0.2506 REMARK 3 16 1.7900 - 1.7600 1.00 2693 144 0.1910 0.2997 REMARK 3 17 1.7600 - 1.7200 1.00 2700 145 0.2153 0.3211 REMARK 3 18 1.7200 - 1.6900 1.00 2698 172 0.1764 0.2280 REMARK 3 19 1.6900 - 1.6600 1.00 2673 138 0.1831 0.2456 REMARK 3 20 1.6600 - 1.6300 1.00 2718 133 0.1960 0.2450 REMARK 3 21 1.6300 - 1.6000 1.00 2709 136 0.2149 0.2747 REMARK 3 22 1.6000 - 1.5800 0.85 2299 114 0.2366 0.3131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.174 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.027 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2657 REMARK 3 ANGLE : 1.335 3611 REMARK 3 CHIRALITY : 0.070 414 REMARK 3 PLANARITY : 0.019 466 REMARK 3 DIHEDRAL : 8.718 389 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 900158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 49.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NNQ REMARK 200 REMARK 200 REMARK: BIPYRAMIDAL-SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SUCCINIC ACID PH 7.0 REMARK 280 COCRYSTALLIZED WITH CARBAMOYL PHOSPHATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 69.70500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.70500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 69.70500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 69.70500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 69.70500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 69.70500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 69.70500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 69.70500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 69.70500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 69.70500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 69.70500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 69.70500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 69.70500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 69.70500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 34.85250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 104.55750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 104.55750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 34.85250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 34.85250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 34.85250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 104.55750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 104.55750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 34.85250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 104.55750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 34.85250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 104.55750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 34.85250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 104.55750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 104.55750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 104.55750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 34.85250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 104.55750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 34.85250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 34.85250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 34.85250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 104.55750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 104.55750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 34.85250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 34.85250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 104.55750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 104.55750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 104.55750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 104.55750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 34.85250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 104.55750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 34.85250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 104.55750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 34.85250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 34.85250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 34.85250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 69.70500 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 69.70500 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -69.70500 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 69.70500 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2719 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2734 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2739 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2760 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2777 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A1941 CG CD OE1 NE2 REMARK 470 ARG A1982 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1990 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A1995 CB CYS A1995 SG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A2078 16.43 58.87 REMARK 500 HIS A2081 73.34 -157.27 REMARK 500 LEU A2215 157.28 69.59 REMARK 500 ASN A2218 -115.65 -99.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1963 0.10 SIDE CHAIN REMARK 500 ARG A2093 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2785 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2786 DISTANCE = 7.23 ANGSTROMS DBREF 8BPL A 1938 2253 UNP G0S583 G0S583_CHATD 1938 2253 SEQADV 8BPL CYS A 2045 UNP G0S583 ASN 2045 ENGINEERED MUTATION SEQADV 8BPL CYS A 2238 UNP G0S583 ARG 2238 ENGINEERED MUTATION SEQRES 1 A 316 SER PRO LEU GLN GLU MET LEU ALA ALA PRO SER SER PHE SEQRES 2 A 316 LYS LYS SER HIS VAL LEU SER VAL THR GLN PHE THR ARG SEQRES 3 A 316 ALA ASP LEU HIS LEU LEU PHE GLN ILE ALA GLN GLU MET SEQRES 4 A 316 ARG LEU GLY VAL GLN ARG GLU GLY VAL LEU ASP ILE LEU SEQRES 5 A 316 ARG GLY LYS VAL LEU CYS THR LEU PHE TYR GLU PRO SER SEQRES 6 A 316 THR ARG THR SER ALA SER PHE ASP ALA ALA MET GLN ARG SEQRES 7 A 316 LEU GLY GLY ARG THR ILE PRO ILE GLN THR SER THR SER SEQRES 8 A 316 SER VAL GLN LYS GLY GLU THR LEU GLN ASP THR LEU ARG SEQRES 9 A 316 THR LEU ALA CYS TYR SER ASP ALA ILE VAL LEU ARG HIS SEQRES 10 A 316 PRO ASP GLU LYS CYS VAL ASP VAL ALA LYS LYS TYR CYS SEQRES 11 A 316 PRO VAL PRO VAL ILE ASN GLY GLY ASN GLY SER LYS GLU SEQRES 12 A 316 HIS PRO THR GLN ALA PHE LEU ASP LEU PHE THR ILE ARG SEQRES 13 A 316 GLU GLU LEU GLY THR MET GLN GLY LEU THR ILE THR PHE SEQRES 14 A 316 VAL GLY ASP LEU LEU TYR GLY ARG PRO VAL HIS SER LEU SEQRES 15 A 316 VAL TYR LEU LEU ARG HIS TYR GLN VAL LYS VAL GLN LEU SEQRES 16 A 316 VAL SER PRO LYS ALA LEU ARG LEU PRO PRO ALA VAL ARG SEQRES 17 A 316 GLN GLN LEU VAL ASP ALA GLY GLN LEU LEU CYS GLU SER SEQRES 18 A 316 GLU ALA LEU THR PRO GLU ILE LEU GLY ARG THR ASP VAL SEQRES 19 A 316 LEU TYR CYS THR ARG VAL GLN LYS GLU ARG PHE PRO SER SEQRES 20 A 316 LEU ALA GLU PHE GLU ALA VAL LYS ASP SER TYR ARG ILE SEQRES 21 A 316 ASP TYR SER THR LEU LYS TYR ALA LYS PRO THR THR VAL SEQRES 22 A 316 VAL MET HIS PRO LEU PRO ARG ASN GLU GLU VAL ALA GLU SEQRES 23 A 316 GLU VAL ASP PHE ASP GLN ARG ALA ALA TYR PHE ARG GLN SEQRES 24 A 316 MET CYS TYR GLY LEU TYR CYS ARG MET ALA LEU LEU ALA SEQRES 25 A 316 LEU VAL MET SER HET CP A2401 10 HET GOL A2402 12 HET GOL A2403 14 HET GOL A2404 13 HET GOL A2405 14 HET GOL A2406 14 HET GOL A2407 14 HET SIN A2408 12 HETNAM CP PHOSPHORIC ACID MONO(FORMAMIDE)ESTER HETNAM GOL GLYCEROL HETNAM SIN SUCCINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CP C H4 N O5 P FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 SIN C4 H6 O4 FORMUL 10 HOH *286(H2 O) HELIX 1 AA1 SER A 1938 ALA A 1946 1 9 HELIX 2 AA2 SER A 1957 PHE A 1961 5 5 HELIX 3 AA3 THR A 1962 GLY A 1984 1 23 HELIX 4 AA4 THR A 2003 LEU A 2016 1 14 HELIX 5 AA5 SER A 2026 GLY A 2033 5 8 HELIX 6 AA6 THR A 2035 CYS A 2045 1 11 HELIX 7 AA7 LYS A 2058 CYS A 2067 1 10 HELIX 8 AA8 HIS A 2081 GLY A 2097 1 17 HELIX 9 AA9 GLY A 2113 LEU A 2123 1 11 HELIX 10 AB1 ARG A 2124 TYR A 2126 5 3 HELIX 11 AB2 PRO A 2135 ARG A 2139 5 5 HELIX 12 AB3 PRO A 2141 ALA A 2151 1 11 HELIX 13 AB4 THR A 2162 ARG A 2168 1 7 HELIX 14 AB5 GLN A 2178 PHE A 2182 5 5 HELIX 15 AB6 SER A 2184 ARG A 2196 1 13 HELIX 16 AB7 ASP A 2198 LYS A 2203 1 6 HELIX 17 AB8 ALA A 2222 ASP A 2226 5 5 HELIX 18 AB9 ALA A 2232 SER A 2253 1 22 SHEET 1 AA1 4 ARG A2019 GLN A2024 0 SHEET 2 AA1 4 VAL A1993 PHE A1998 1 N THR A1996 O ILE A2023 SHEET 3 AA1 4 ALA A2049 HIS A2054 1 O VAL A2051 N LEU A1997 SHEET 4 AA1 4 VAL A2071 ASN A2076 1 O GLY A2074 N LEU A2052 SHEET 1 AA2 5 LEU A2154 SER A2158 0 SHEET 2 AA2 5 LYS A2129 VAL A2133 1 N VAL A2130 O LEU A2155 SHEET 3 AA2 5 THR A2103 VAL A2107 1 N PHE A2106 O VAL A2133 SHEET 4 AA2 5 VAL A2171 CYS A2174 1 O VAL A2171 N THR A2105 SHEET 5 AA2 5 VAL A2210 MET A2212 1 O VAL A2210 N LEU A2172 SSBOND 1 CYS A 2045 CYS A 2238 1555 8555 2.26 CISPEP 1 LEU A 2215 PRO A 2216 0 -0.73 CRYST1 139.410 139.410 139.410 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007173 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007173 0.00000