HEADER TRANSCRIPTION 17-NOV-22 8BPT TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF BRD5 FROM LEISHMANIA TITLE 2 DONOVANI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMO DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA DONOVANI BPK282A1; SOURCE 3 ORGANISM_TAXID: 981087; SOURCE 4 GENE: LDBPK_091320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS LEISHMANIASIS, GENERAL TRANSCRIPTION, LYSINE ACETYLATION, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.WILKINSON,E.J.DODSON,N.G.JONES,J.BORGIA REVDAT 3 22-NOV-23 8BPT 1 JRNL REVDAT 2 15-NOV-23 8BPT 1 JRNL REVDAT 1 27-SEP-23 8BPT 0 JRNL AUTH C.N.RUSSELL,J.L.CARTER,J.M.BORGIA,J.BUSH,F.CALDERON, JRNL AUTH 2 R.GABARRO,S.J.CONWAY,J.C.MOTTRAM,A.J.WILKINSON,N.G.JONES JRNL TITL BROMODOMAIN FACTOR 5 AS A TARGET FOR ANTILEISHMANIAL DRUG JRNL TITL 2 DISCOVERY. JRNL REF ACS INFECT DIS. V. 9 2340 2023 JRNL REFN ESSN 2373-8227 JRNL PMID 37906637 JRNL DOI 10.1021/ACSINFECDIS.3C00431 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.N.RUSSELL,J.L.CARTER,J.M.BORGIA,J.BUSH,F.CALDERON, REMARK 1 AUTH 2 R.GABARRO,S.J.CONWAY,J.C.MOTTRAM,A.J.WILKINSON,N.G.JONES REMARK 1 TITL BROMODOMAIN FACTOR 5 AS A TARGET FOR ANTILEISHMANIAL DRUG REMARK 1 TITL 2 DISCOVERY REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2023.08.21.554125 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.G.JONES,V.GEOGHEGAN,G.MOORE,J.B.T.CARNIELLI,K.NEWLING, REMARK 1 AUTH 2 F.CALDERON,R.GABARRO,J.MARTIN,R.K.PRINJHA,I.RIOJA, REMARK 1 AUTH 3 A.J.WILKINSON,J.C.MOTTRAM REMARK 1 TITL BROMODOMAIN FACTOR 5 IS AN ESSENTIAL REGULATOR OF REMARK 1 TITL 2 TRANSCRIPTION IN LEISHMANIA. REMARK 1 REF NAT COMMUN V. 13 4071 2022 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 35831302 REMARK 1 DOI 10.1038/S41467-022-31742-1 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 35358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.811 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.07600 REMARK 3 B22 (A**2) : -2.18300 REMARK 3 B33 (A**2) : 0.10700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.487 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2252 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2046 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3048 ; 1.402 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4738 ; 0.493 ; 1.556 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 4.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;11.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;15.855 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2662 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 490 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 454 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 63 ; 0.386 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1163 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 2.770 ; 1.614 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1110 ; 2.768 ; 1.614 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1384 ; 3.278 ; 2.419 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1385 ; 3.277 ; 2.420 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1142 ; 3.951 ; 1.952 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1141 ; 3.945 ; 1.950 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1664 ; 4.371 ; 2.817 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1665 ; 4.370 ; 2.818 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4298 ; 4.154 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3699 18.0973 -15.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.0906 REMARK 3 T33: 0.0251 T12: 0.0328 REMARK 3 T13: -0.0221 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.6711 L22: 3.6623 REMARK 3 L33: 0.5024 L12: 0.0473 REMARK 3 L13: -0.2284 L23: 0.0395 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0601 S13: 0.0903 REMARK 3 S21: 0.1534 S22: 0.0186 S23: 0.0336 REMARK 3 S31: -0.1860 S32: -0.0789 S33: -0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -0.4683 47.9839 5.5985 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0112 REMARK 3 T33: 0.0161 T12: 0.0058 REMARK 3 T13: 0.0109 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.6373 L22: 1.6292 REMARK 3 L33: 3.5095 L12: -0.0694 REMARK 3 L13: -0.1399 L23: 0.5390 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: 0.0536 S13: 0.0001 REMARK 3 S21: -0.1150 S22: 0.0015 S23: -0.0693 REMARK 3 S31: 0.0667 S32: 0.0726 S33: 0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292125595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 31.845 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 31.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.02900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5TCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5 AND 1.4 M SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.68500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.89900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.67800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.89900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.68500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.67800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 161 REMARK 465 ALA B 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER B 227 O HOH B 402 1.57 REMARK 500 O HOH A 463 O HOH A 471 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB TYR B 222 O HOH B 479 4565 0.64 REMARK 500 HB2 TYR B 222 O HOH B 479 4565 0.93 REMARK 500 HB3 TYR B 222 O HOH B 479 4565 1.01 REMARK 500 CG TYR B 222 O HOH B 479 4565 1.43 REMARK 500 HH12 ARG B 215 OE1 GLU B 300 1655 1.46 REMARK 500 NH1 ARG B 207 HE22 GLN B 216 4465 1.56 REMARK 500 CA TYR B 222 O HOH B 479 4565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 251 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 276 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 230 -76.68 -94.91 REMARK 500 VAL B 230 -76.38 -88.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 180 0.08 SIDE CHAIN REMARK 500 ARG A 202 0.10 SIDE CHAIN REMARK 500 ARG B 180 0.12 SIDE CHAIN REMARK 500 ARG B 198 0.10 SIDE CHAIN REMARK 500 ARG B 217 0.09 SIDE CHAIN REMARK 500 ARG B 241 0.09 SIDE CHAIN REMARK 500 ARG B 251 0.08 SIDE CHAIN REMARK 500 ARG B 277 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8BPT A 161 300 UNP E9BA17 E9BA17_LEIDB 161 300 DBREF 8BPT B 161 300 UNP E9BA17 E9BA17_LEIDB 161 300 SEQRES 1 A 140 ALA ALA ALA PRO PRO SER THR ARG GLU MET VAL GLN LEU SEQRES 2 A 140 VAL ASP SER LEU ASN ARG ARG GLU ASP GLY GLY ALA PHE SEQRES 3 A 140 SER VAL ASP VAL ALA GLU ALA TYR PRO ASP LEU ARG ASP SEQRES 4 A 140 SER TYR ARG LYS ILE CYS PRO ARG PRO MET ASN LEU ILE SEQRES 5 A 140 LEU MET ARG GLN ARG ALA LYS GLU GLY TYR TYR THR SER SEQRES 6 A 140 GLY SER ALA THR VAL TYR GLY ASP THR VAL ALA ALA SER SEQRES 7 A 140 LEU THR ARG LEU ARG GLU ASP ILE GLU LEU LEU VAL ARG SEQRES 8 A 140 ASN CYS ILE THR PHE ASN VAL LYS VAL GLU SER TRP VAL SEQRES 9 A 140 THR LEU ALA ARG SER PHE GLN ALA PHE ALA HIS ARG ARG SEQRES 10 A 140 VAL ASP ASP PHE VAL LEU ARG HIS ALA ALA PHE LEU ARG SEQRES 11 A 140 GLY THR THR MET GLY ALA GLU VAL TYR GLU SEQRES 1 B 140 ALA ALA ALA PRO PRO SER THR ARG GLU MET VAL GLN LEU SEQRES 2 B 140 VAL ASP SER LEU ASN ARG ARG GLU ASP GLY GLY ALA PHE SEQRES 3 B 140 SER VAL ASP VAL ALA GLU ALA TYR PRO ASP LEU ARG ASP SEQRES 4 B 140 SER TYR ARG LYS ILE CYS PRO ARG PRO MET ASN LEU ILE SEQRES 5 B 140 LEU MET ARG GLN ARG ALA LYS GLU GLY TYR TYR THR SER SEQRES 6 B 140 GLY SER ALA THR VAL TYR GLY ASP THR VAL ALA ALA SER SEQRES 7 B 140 LEU THR ARG LEU ARG GLU ASP ILE GLU LEU LEU VAL ARG SEQRES 8 B 140 ASN CYS ILE THR PHE ASN VAL LYS VAL GLU SER TRP VAL SEQRES 9 B 140 THR LEU ALA ARG SER PHE GLN ALA PHE ALA HIS ARG ARG SEQRES 10 B 140 VAL ASP ASP PHE VAL LEU ARG HIS ALA ALA PHE LEU ARG SEQRES 11 B 140 GLY THR THR MET GLY ALA GLU VAL TYR GLU FORMUL 3 HOH *163(H2 O) HELIX 1 AA1 SER A 166 LEU A 177 1 12 HELIX 2 AA2 ASN A 178 GLY A 183 5 6 HELIX 3 AA3 ASP A 189 TYR A 194 1 6 HELIX 4 AA4 LEU A 197 CYS A 205 1 9 HELIX 5 AA5 ASN A 210 GLY A 221 1 12 HELIX 6 AA6 LEU A 239 ASN A 257 1 19 HELIX 7 AA7 VAL A 260 ALA A 286 1 27 HELIX 8 AA8 ALA A 287 ARG A 290 5 4 HELIX 9 AA9 MET A 294 TYR A 299 1 6 HELIX 10 AB1 SER B 166 SER B 176 1 11 HELIX 11 AB2 LEU B 177 ASN B 178 5 2 HELIX 12 AB3 ARG B 179 GLY B 183 5 5 HELIX 13 AB4 ASP B 189 TYR B 194 1 6 HELIX 14 AB5 LEU B 197 CYS B 205 1 9 HELIX 15 AB6 ASN B 210 GLU B 220 1 11 HELIX 16 AB7 LEU B 239 ASN B 257 1 19 HELIX 17 AB8 VAL B 260 ALA B 286 1 27 HELIX 18 AB9 ALA B 287 ARG B 290 5 4 HELIX 19 AC1 MET B 294 TYR B 299 1 6 CRYST1 33.370 75.356 105.798 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029967 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009452 0.00000