data_8BQY # _entry.id 8BQY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8BQY pdb_00008bqy 10.2210/pdb8bqy/pdb WWPDB D_1292126750 ? ? BMRB 34772 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB 'An i-motif domain able to undergo pH-dependent conformational transitions (acidic structure)' 34772 unspecified PDB . 8BV6 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8BQY _pdbx_database_status.recvd_initial_deposition_date 2022-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Serrano-Chacon, I.' 1 ? 'Mir, B.' 2 ? 'Cupellini, L.' 3 ? 'Colizzi, F.' 4 ? 'Orozco, M.' 5 ? 'Escaja, N.' 6 ? 'Gonzalez, C.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 145 _citation.language ? _citation.page_first 3696 _citation.page_last 3705 _citation.title 'pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.2c13043 _citation.pdbx_database_id_PubMed 36745195 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Serrano-Chacon, I.' 1 ? primary 'Mir, B.' 2 ? primary 'Cupellini, L.' 3 0000-0003-0848-2908 primary 'Colizzi, F.' 4 0000-0001-5601-1452 primary 'Orozco, M.' 5 0000-0002-8608-3278 primary 'Escaja, N.' 6 ? primary 'Gonzalez, C.' 7 0000-0001-8796-1282 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3') ; _entity.formula_weight 6631.280 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(DC)(DNR)(DG)(DT)(DT)(DNR)(DNR)(DG)(DT)(DT)(DT)(DT)(DT)(DC)(DC)(DG)(DT)(DT)(DNR) (DC)(DG)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can CCGTTCCGTTTTTCCGTTCCGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DNR n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DNR n 1 7 DNR n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DT n 1 12 DT n 1 13 DT n 1 14 DC n 1 15 DC n 1 16 DG n 1 17 DT n 1 18 DT n 1 19 DNR n 1 20 DC n 1 21 DG n 1 22 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8BQY _struct_ref.pdbx_db_accession 8BQY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8BQY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8BQY _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DNR 'DNA linking' n ;2'-DEOXY-N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE ; ? 'C9 H15 N3 O7 P 1' 308.205 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 2 1 '2D 1H-1H TOCSY' 1 isotropic 3 2 2 '2D 1H-1H TOCSY' 1 isotropic 4 1 1 '2D 1H-1H NOESY' 1 isotropic 5 2 1 '2D 1H-1H NOESY' 1 isotropic 6 2 2 '2D 1H-1H NOESY' 1 isotropic 7 2 2 '2D DQF-COSY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 atm 1 5 10 ? ? mM T278 ? pH ? ? K 2 298 atm 1 5 10 ? ? mM T298 ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;500 uM DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3'), 10 mM sodium phosphate, 0.5 v/v DSS, 90% H2O/10% D2O ; '90% H2O/10% D2O' NN4 solution ? 2 ;500 uM DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3'), 10 mM sodium phosphate, 0.5 v/v DSS, 100% D2O ; '100% D2O' NN4_D2O solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 8BQY _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 5 # _pdbx_nmr_ensemble.entry_id 8BQY _pdbx_nmr_ensemble.conformers_calculated_total_number 15 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8BQY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'chemical shift assignment' Sparky ? Goddard 4 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 5 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 6 'data analysis' 3DNA ? 'Lu and Olson' 7 'data analysis' MOLMOL ? 'Koradi, Billeter and Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8BQY _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8BQY _struct.title 'An i-motif domain able to undergo pH-dependent conformational transitions (acidic structure)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8BQY _struct_keywords.text 'DNA structure, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 1 "O3'" ? ? ? 1_555 A DNR 2 P ? ? A DC 1 A DNR 2 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A DNR 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A DNR 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? A DT 5 "O3'" ? ? ? 1_555 A DNR 6 P ? ? A DT 5 A DNR 6 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale4 covale both ? A DNR 6 "O3'" ? ? ? 1_555 A DNR 7 P ? ? A DNR 6 A DNR 7 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale5 covale both ? A DNR 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A DNR 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale6 covale both ? A DT 18 "O3'" ? ? ? 1_555 A DNR 19 P ? ? A DT 18 A DNR 19 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale7 covale both ? A DNR 19 "O3'" ? ? ? 1_555 A DC 20 P ? ? A DNR 19 A DC 20 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DNR 19 O2 ? ? A DC 1 A DNR 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog2 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DNR 19 N4 ? ? A DC 1 A DNR 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog3 hydrog ? ? A DNR 2 N4 ? ? ? 1_555 A DT 13 O2 ? ? A DNR 2 A DT 13 1_555 ? ? ? ? ? ? 'DNR-DT MISPAIR' ? ? ? hydrog4 hydrog ? ? A DNR 2 N4 ? ? ? 1_555 A DC 20 O2 ? ? A DNR 2 A DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A DNR 2 O2 ? ? ? 1_555 A DC 20 N4 ? ? A DNR 2 A DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DT 13 O2 ? ? A DG 3 A DT 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DT 13 N3 ? ? A DG 3 A DT 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 21 N3 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DG 21 N2 ? ? A DG 3 A DG 21 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DG 21 O6 ? ? A DT 5 A DG 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A DT 5 O2 ? ? ? 1_555 A DG 21 N1 ? ? A DT 5 A DG 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A DNR 6 N4 ? ? ? 1_555 A DC 14 O2 ? ? A DNR 6 A DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog13 hydrog ? ? A DNR 6 O2 ? ? ? 1_555 A DC 14 N4 ? ? A DNR 6 A DC 14 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog14 hydrog ? ? A DNR 7 N4 ? ? ? 1_555 A DC 15 O2 ? ? A DNR 7 A DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog15 hydrog ? ? A DNR 7 O2 ? ? ? 1_555 A DC 15 N4 ? ? A DNR 7 A DC 15 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog16 hydrog ? ? A DNR 7 N4 ? ? ? 1_555 A DT 18 O2 ? ? A DNR 7 A DT 18 1_555 ? ? ? ? ? ? 'DNR-DT MISPAIR' ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 16 N3 ? ? A DG 8 A DG 16 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog18 hydrog ? ? A DG 8 N3 ? ? ? 1_555 A DG 16 N2 ? ? A DG 8 A DG 16 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DT 18 O2 ? ? A DG 8 A DT 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DT 18 N3 ? ? A DG 8 A DT 18 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DG 16 O6 ? ? A DT 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A DT 10 O2 ? ? ? 1_555 A DG 16 N1 ? ? A DT 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 8BQY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DNR 2 2 2 DNR DNR A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DNR 6 6 6 DNR DNR A . n A 1 7 DNR 7 7 7 DNR DNR A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DC 14 14 14 DC DC A . n A 1 15 DC 15 15 15 DC DC A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DNR 19 19 19 DNR DNR A . n A 1 20 DC 20 20 20 DC DC A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DT 22 22 22 DT DT A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email cgonzalez@iqfr.csic.es _pdbx_contact_author.name_first Carlos _pdbx_contact_author.name_last Gonzalez _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8796-1282 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2290 ? 1 MORE 16 ? 1 'SSA (A^2)' 3110 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-02-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_entry_details.entry_id 8BQY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3') ; 500 ? uM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 DSS 0.5 ? v/v 'natural abundance' 2 ;DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3') ; 500 ? uM 'natural abundance' 2 'sodium phosphate' 10 ? mM 'natural abundance' 2 DSS 0.5 ? v/v 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO5'" A DC 1 ? ? OP1 A DT 11 ? ? 1.44 2 2 "HO5'" A DC 1 ? ? "O3'" A DT 10 ? ? 1.59 3 6 "HO5'" A DC 1 ? ? OP1 A DT 11 ? ? 1.34 4 9 "HO5'" A DC 1 ? ? OP2 A DT 12 ? ? 1.36 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.59 118.90 3.69 0.60 N 2 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.12 121.90 -4.78 0.70 N 3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 114.57 108.30 6.27 0.30 N 4 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.68 122.90 -4.22 0.60 N 5 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.51 122.90 -4.39 0.60 N 6 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.70 108.30 4.40 0.30 N 7 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.10 122.90 -4.80 0.60 N 8 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 114.67 108.30 6.37 0.30 N 9 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.16 122.90 -4.74 0.60 N 10 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 117.92 108.30 9.62 0.30 N 11 1 N3 A DT 12 ? ? C2 A DT 12 ? ? O2 A DT 12 ? ? 118.07 122.30 -4.23 0.60 N 12 1 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.15 122.90 -3.75 0.60 N 13 1 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.72 122.90 -4.18 0.60 N 14 1 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.67 118.90 4.77 0.60 N 15 1 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 115.84 121.90 -6.06 0.70 N 16 1 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 110.17 108.30 1.87 0.30 N 17 1 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.72 118.90 3.82 0.60 N 18 1 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.97 121.90 -4.93 0.70 N 19 1 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.62 122.90 -4.28 0.60 N 20 1 C6 A DT 18 ? ? C5 A DT 18 ? ? C7 A DT 18 ? ? 118.99 122.90 -3.91 0.60 N 21 1 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.83 118.90 4.93 0.60 N 22 1 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.07 121.90 -5.83 0.70 N 23 1 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.08 108.30 2.78 0.30 N 24 1 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 118.63 122.90 -4.27 0.60 N 25 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.24 121.90 -4.66 0.70 N 26 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.79 108.30 5.49 0.30 N 27 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.74 122.90 -4.16 0.60 N 28 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.25 108.30 1.95 0.30 N 29 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.79 108.30 2.49 0.30 N 30 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.64 122.90 -4.26 0.60 N 31 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 103.60 108.00 -4.40 0.70 N 32 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.17 108.30 2.87 0.30 N 33 2 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 117.38 122.90 -5.52 0.60 N 34 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.73 108.30 2.43 0.30 N 35 2 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 117.98 122.90 -4.92 0.60 N 36 2 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.23 122.90 -4.67 0.60 N 37 2 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.40 118.90 4.50 0.60 N 38 2 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 115.74 121.90 -6.16 0.70 N 39 2 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.91 121.90 -4.99 0.70 N 40 2 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.98 108.30 2.68 0.30 N 41 2 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.78 122.90 -4.12 0.60 N 42 2 C6 A DT 18 ? ? C5 A DT 18 ? ? C7 A DT 18 ? ? 118.95 122.90 -3.95 0.60 N 43 2 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.15 118.90 4.25 0.60 N 44 2 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.28 121.90 -5.62 0.70 N 45 2 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.51 108.30 3.21 0.30 N 46 2 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 118.78 122.90 -4.12 0.60 N 47 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.49 108.30 2.19 0.30 N 48 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.39 121.90 -4.51 0.70 N 49 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.96 108.30 5.66 0.30 N 50 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.96 122.90 -3.94 0.60 N 51 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.56 108.30 4.26 0.30 N 52 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.90 122.90 -4.00 0.60 N 53 3 N3 A DT 10 ? ? C2 A DT 10 ? ? O2 A DT 10 ? ? 118.55 122.30 -3.75 0.60 N 54 3 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.18 122.90 -3.72 0.60 N 55 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.83 108.30 2.53 0.30 N 56 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.82 122.90 -4.08 0.60 N 57 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 113.61 108.30 5.31 0.30 N 58 3 N3 A DT 12 ? ? C2 A DT 12 ? ? O2 A DT 12 ? ? 117.88 122.30 -4.42 0.60 N 59 3 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.74 122.90 -4.16 0.60 N 60 3 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.60 118.90 4.70 0.60 N 61 3 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 115.50 121.90 -6.40 0.70 N 62 3 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 110.31 108.30 2.01 0.30 N 63 3 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.23 121.90 -4.67 0.70 N 64 3 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.33 108.30 2.03 0.30 N 65 3 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 117.86 122.90 -5.04 0.60 N 66 3 C6 A DT 18 ? ? C5 A DT 18 ? ? C7 A DT 18 ? ? 118.78 122.90 -4.12 0.60 N 67 3 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.41 118.90 4.51 0.60 N 68 3 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.27 121.90 -5.63 0.70 N 69 3 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.30 108.30 3.00 0.30 N 70 3 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.12 122.90 -3.78 0.60 N 71 4 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.66 118.90 3.76 0.60 N 72 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.02 121.90 -4.88 0.70 N 73 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 114.04 108.30 5.74 0.30 N 74 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.39 122.90 -4.51 0.60 N 75 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.49 108.30 2.19 0.30 N 76 4 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.28 122.90 -3.62 0.60 N 77 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.60 108.30 4.30 0.30 N 78 4 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.31 122.90 -4.59 0.60 N 79 4 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.39 122.90 -4.51 0.60 N 80 4 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.76 108.30 2.46 0.30 N 81 4 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.42 122.90 -4.48 0.60 N 82 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.24 108.30 1.94 0.30 N 83 4 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.08 122.90 -3.82 0.60 N 84 4 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.18 108.30 1.88 0.30 N 85 4 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.47 118.90 4.57 0.60 N 86 4 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 115.79 121.90 -6.11 0.70 N 87 4 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.03 121.90 -4.87 0.70 N 88 4 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 117.99 122.90 -4.91 0.60 N 89 4 C6 A DT 18 ? ? C5 A DT 18 ? ? C7 A DT 18 ? ? 119.01 122.90 -3.89 0.60 N 90 4 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.72 118.90 4.82 0.60 N 91 4 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.04 121.90 -5.86 0.70 N 92 4 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.45 108.30 2.15 0.30 N 93 4 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.14 108.30 2.84 0.30 N 94 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.51 121.90 -4.39 0.70 N 95 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.83 108.30 4.53 0.30 N 96 5 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 118.68 122.30 -3.62 0.60 N 97 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.52 122.90 -4.38 0.60 N 98 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.48 108.30 2.18 0.30 N 99 5 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.11 122.90 -3.79 0.60 N 100 5 "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 110.81 106.00 4.81 0.60 N 101 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.61 122.90 -4.29 0.60 N 102 5 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.26 122.90 -3.64 0.60 N 103 5 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.44 108.30 2.14 0.30 N 104 5 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.28 122.90 -4.62 0.60 N 105 5 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.33 122.90 -4.57 0.60 N 106 5 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.50 122.90 -4.40 0.60 N 107 5 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.28 118.90 4.38 0.60 N 108 5 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.17 121.90 -5.73 0.70 N 109 5 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.02 121.90 -4.88 0.70 N 110 5 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.31 108.30 2.01 0.30 N 111 5 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.35 122.90 -4.55 0.60 N 112 5 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.32 118.90 4.42 0.60 N 113 5 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.20 121.90 -5.70 0.70 N 114 5 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.12 108.30 2.82 0.30 N 115 5 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 118.41 122.90 -4.49 0.60 N 116 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.36 108.30 3.06 0.30 N 117 6 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.29 121.90 -4.61 0.70 N 118 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.72 108.30 5.42 0.30 N 119 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.95 122.90 -3.95 0.60 N 120 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.26 108.30 1.96 0.30 N 121 6 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.74 122.90 -4.16 0.60 N 122 6 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.27 108.30 3.97 0.30 N 123 6 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 117.67 122.90 -5.23 0.60 N 124 6 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.29 122.90 -3.61 0.60 N 125 6 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.19 108.30 1.89 0.30 N 126 6 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.98 122.90 -3.92 0.60 N 127 6 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.47 108.30 3.17 0.30 N 128 6 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.99 122.90 -3.91 0.60 N 129 6 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.22 122.90 -3.68 0.60 N 130 6 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.27 118.90 4.37 0.60 N 131 6 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 115.82 121.90 -6.08 0.70 N 132 6 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.25 121.90 -4.65 0.70 N 133 6 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.79 108.30 2.49 0.30 N 134 6 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.16 122.90 -4.74 0.60 N 135 6 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.58 118.90 4.68 0.60 N 136 6 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.01 121.90 -5.89 0.70 N 137 6 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.44 108.30 4.14 0.30 N 138 6 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.01 122.90 -3.89 0.60 N 139 7 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.27 121.90 -4.63 0.70 N 140 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.31 108.30 5.01 0.30 N 141 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.49 122.90 -4.41 0.60 N 142 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.74 108.30 2.44 0.30 N 143 7 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.76 122.90 -4.14 0.60 N 144 7 "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 109.75 106.00 3.75 0.60 N 145 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.27 108.30 1.97 0.30 N 146 7 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.67 122.90 -4.23 0.60 N 147 7 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.27 108.30 1.97 0.30 N 148 7 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.40 122.90 -4.50 0.60 N 149 7 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.69 108.30 3.39 0.30 N 150 7 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.16 122.90 -3.74 0.60 N 151 7 "O4'" A DC 14 ? ? "C1'" A DC 14 ? ? N1 A DC 14 ? ? 110.35 108.30 2.05 0.30 N 152 7 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.35 118.90 4.45 0.60 N 153 7 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 115.78 121.90 -6.12 0.70 N 154 7 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.90 121.90 -5.00 0.70 N 155 7 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 111.29 108.30 2.99 0.30 N 156 7 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 119.08 122.90 -3.82 0.60 N 157 7 C6 A DT 18 ? ? C5 A DT 18 ? ? C7 A DT 18 ? ? 118.50 122.90 -4.40 0.60 N 158 7 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.81 118.90 4.91 0.60 N 159 7 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.07 121.90 -5.83 0.70 N 160 7 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.84 108.30 3.54 0.30 N 161 7 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 118.97 122.90 -3.93 0.60 N 162 8 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.57 118.90 3.67 0.60 N 163 8 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.08 121.90 -4.82 0.70 N 164 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 114.69 108.30 6.39 0.30 N 165 8 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.82 122.90 -4.08 0.60 N 166 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.15 108.30 1.85 0.30 N 167 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 113.17 108.30 4.87 0.30 N 168 8 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.47 122.90 -4.43 0.60 N 169 8 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.85 122.90 -4.05 0.60 N 170 8 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 113.06 108.30 4.76 0.30 N 171 8 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.24 122.30 -4.06 0.60 N 172 8 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.19 122.90 -4.71 0.60 N 173 8 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.15 122.90 -3.75 0.60 N 174 8 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.74 118.90 4.84 0.60 N 175 8 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 115.85 121.90 -6.05 0.70 N 176 8 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.17 121.90 -4.73 0.70 N 177 8 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.09 122.90 -4.81 0.60 N 178 8 "O4'" A DT 18 ? ? "C1'" A DT 18 ? ? N1 A DT 18 ? ? 110.10 108.30 1.80 0.30 N 179 8 N3 A DT 18 ? ? C2 A DT 18 ? ? O2 A DT 18 ? ? 118.51 122.30 -3.79 0.60 N 180 8 C6 A DT 18 ? ? C5 A DT 18 ? ? C7 A DT 18 ? ? 118.97 122.90 -3.93 0.60 N 181 8 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 122.85 118.90 3.95 0.60 N 182 8 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.48 121.90 -5.42 0.70 N 183 8 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 110.97 108.30 2.67 0.30 N 184 8 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.15 122.90 -3.75 0.60 N 185 9 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.63 118.90 3.73 0.60 N 186 9 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.00 121.90 -4.90 0.70 N 187 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.50 108.30 5.20 0.30 N 188 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.98 122.90 -3.92 0.60 N 189 9 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.44 108.30 2.14 0.30 N 190 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.44 108.30 4.14 0.30 N 191 9 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 118.41 122.30 -3.89 0.60 N 192 9 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 117.67 122.90 -5.23 0.60 N 193 9 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 118.93 122.90 -3.97 0.60 N 194 9 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.32 122.90 -4.58 0.60 N 195 9 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.70 108.30 2.40 0.30 N 196 9 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.29 122.90 -4.61 0.60 N 197 9 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.21 118.90 4.31 0.60 N 198 9 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.03 121.90 -5.87 0.70 N 199 9 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.44 121.90 -4.46 0.70 N 200 9 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.68 122.90 -4.22 0.60 N 201 9 C6 A DT 18 ? ? C5 A DT 18 ? ? C7 A DT 18 ? ? 118.37 122.90 -4.53 0.60 N 202 9 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 124.05 118.90 5.15 0.60 N 203 9 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 116.02 121.90 -5.88 0.70 N 204 9 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.22 108.30 2.92 0.30 N 205 9 N3 A DT 22 ? ? C2 A DT 22 ? ? O2 A DT 22 ? ? 118.26 122.30 -4.04 0.60 N 206 9 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.21 122.90 -3.69 0.60 N 207 10 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.89 121.90 -5.01 0.70 N 208 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 114.08 108.30 5.78 0.30 N 209 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.93 122.90 -3.97 0.60 N 210 10 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.17 108.30 2.87 0.30 N 211 10 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.05 108.30 3.75 0.30 N 212 10 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.34 122.90 -4.56 0.60 N 213 10 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.03 122.90 -3.87 0.60 N 214 10 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.93 122.90 -3.97 0.60 N 215 10 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.79 108.30 2.49 0.30 N 216 10 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.28 122.90 -3.62 0.60 N 217 10 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.11 122.90 -3.79 0.60 N 218 10 N1 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 123.10 118.90 4.20 0.60 N 219 10 N3 A DC 14 ? ? C2 A DC 14 ? ? O2 A DC 14 ? ? 116.24 121.90 -5.66 0.70 N 220 10 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 117.03 121.90 -4.87 0.70 N 221 10 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.07 122.90 -4.83 0.60 N 222 10 N3 A DT 18 ? ? C2 A DT 18 ? ? O2 A DT 18 ? ? 118.52 122.30 -3.78 0.60 N 223 10 N1 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 123.66 118.90 4.76 0.60 N 224 10 N3 A DC 20 ? ? C2 A DC 20 ? ? O2 A DC 20 ? ? 115.91 121.90 -5.99 0.70 N 225 10 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.51 108.30 3.21 0.30 N 226 10 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 118.85 122.90 -4.05 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 5 ? ? 0.094 'SIDE CHAIN' 2 1 DC A 14 ? ? 0.135 'SIDE CHAIN' 3 1 DC A 15 ? ? 0.067 'SIDE CHAIN' 4 1 DG A 16 ? ? 0.078 'SIDE CHAIN' 5 1 DG A 21 ? ? 0.064 'SIDE CHAIN' 6 2 DT A 5 ? ? 0.103 'SIDE CHAIN' 7 2 DT A 10 ? ? 0.082 'SIDE CHAIN' 8 2 DC A 14 ? ? 0.119 'SIDE CHAIN' 9 2 DC A 15 ? ? 0.074 'SIDE CHAIN' 10 2 DG A 16 ? ? 0.081 'SIDE CHAIN' 11 3 DG A 3 ? ? 0.056 'SIDE CHAIN' 12 3 DT A 5 ? ? 0.082 'SIDE CHAIN' 13 3 DG A 8 ? ? 0.060 'SIDE CHAIN' 14 3 DC A 14 ? ? 0.112 'SIDE CHAIN' 15 3 DC A 15 ? ? 0.072 'SIDE CHAIN' 16 3 DG A 16 ? ? 0.101 'SIDE CHAIN' 17 4 DG A 3 ? ? 0.058 'SIDE CHAIN' 18 4 DT A 5 ? ? 0.102 'SIDE CHAIN' 19 4 DT A 13 ? ? 0.101 'SIDE CHAIN' 20 4 DC A 14 ? ? 0.104 'SIDE CHAIN' 21 4 DC A 15 ? ? 0.061 'SIDE CHAIN' 22 4 DG A 16 ? ? 0.073 'SIDE CHAIN' 23 5 DT A 5 ? ? 0.114 'SIDE CHAIN' 24 5 DT A 9 ? ? 0.067 'SIDE CHAIN' 25 5 DT A 10 ? ? 0.099 'SIDE CHAIN' 26 5 DT A 13 ? ? 0.089 'SIDE CHAIN' 27 5 DC A 14 ? ? 0.102 'SIDE CHAIN' 28 5 DC A 15 ? ? 0.080 'SIDE CHAIN' 29 5 DG A 16 ? ? 0.082 'SIDE CHAIN' 30 5 DT A 22 ? ? 0.071 'SIDE CHAIN' 31 6 DT A 5 ? ? 0.102 'SIDE CHAIN' 32 6 DG A 8 ? ? 0.053 'SIDE CHAIN' 33 6 DC A 14 ? ? 0.121 'SIDE CHAIN' 34 6 DC A 15 ? ? 0.068 'SIDE CHAIN' 35 6 DG A 16 ? ? 0.092 'SIDE CHAIN' 36 7 DT A 5 ? ? 0.098 'SIDE CHAIN' 37 7 DT A 10 ? ? 0.081 'SIDE CHAIN' 38 7 DC A 14 ? ? 0.116 'SIDE CHAIN' 39 7 DC A 15 ? ? 0.066 'SIDE CHAIN' 40 7 DG A 16 ? ? 0.082 'SIDE CHAIN' 41 8 DT A 5 ? ? 0.095 'SIDE CHAIN' 42 8 DT A 10 ? ? 0.070 'SIDE CHAIN' 43 8 DC A 14 ? ? 0.101 'SIDE CHAIN' 44 8 DC A 15 ? ? 0.063 'SIDE CHAIN' 45 8 DG A 16 ? ? 0.084 'SIDE CHAIN' 46 9 DT A 5 ? ? 0.104 'SIDE CHAIN' 47 9 DG A 8 ? ? 0.077 'SIDE CHAIN' 48 9 DC A 14 ? ? 0.117 'SIDE CHAIN' 49 9 DG A 16 ? ? 0.071 'SIDE CHAIN' 50 9 DT A 17 ? ? 0.084 'SIDE CHAIN' 51 10 DT A 5 ? ? 0.095 'SIDE CHAIN' 52 10 DG A 8 ? ? 0.054 'SIDE CHAIN' 53 10 DT A 13 ? ? 0.086 'SIDE CHAIN' 54 10 DC A 14 ? ? 0.110 'SIDE CHAIN' 55 10 DC A 15 ? ? 0.077 'SIDE CHAIN' 56 10 DG A 16 ? ? 0.079 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8BQY 'double helix' 8BQY 'parallel strands' 8BQY 'bulge loop' 8BQY 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 10 1_555 A DG 16 1_555 2.316 -0.612 0.659 -15.015 15.325 -4.087 1 A_DT10:DG16_A A 10 ? A 16 ? 28 1 1 A DNR 7 1_555 A DC 15 1_555 2.032 1.598 0.084 -13.242 -8.870 179.561 2 A_DNR7:DC15_A A 7 ? A 15 ? 15 2 1 A DC 1 1_555 A DNR 19 1_555 -2.026 -1.402 -0.406 2.625 -6.752 -178.756 3 A_DC1:DNR19_A A 1 ? A 19 ? 15 2 1 A DNR 6 1_555 A DC 14 1_555 1.951 1.292 -0.074 -7.736 7.287 179.704 4 A_DNR6:DC14_A A 6 ? A 14 ? 15 2 1 A DNR 2 1_555 A DC 20 1_555 2.005 1.618 -0.176 -11.069 -5.937 178.658 5 A_DNR2:DC20_A A 2 ? A 20 ? 15 2 1 A DG 3 1_555 A DT 13 1_555 -2.526 -0.717 0.472 0.025 17.738 -6.717 6 A_DG3:DT13_A A 3 ? A 13 ? 28 1 1 A DT 5 1_555 A DG 21 1_555 2.649 -0.774 0.958 -1.925 20.246 0.887 7 A_DT5:DG21_A A 5 ? A 21 ? 28 1 1 A DG 8 1_555 A DT 18 1_555 -2.408 -0.737 0.234 6.378 38.326 -3.108 8 A_DG8:DT18_A A 8 ? A 18 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 10 1_555 A DG 16 1_555 A DNR 7 1_555 A DC 15 1_555 -2.921 3.391 3.518 150.311 -55.860 -22.880 -0.558 1.645 4.547 30.667 82.519 -160.749 1 AA_DT10DNR7:DC15DG16_AA A 10 ? A 16 ? A 7 ? A 15 ? 1 A DNR 7 1_555 A DC 15 1_555 A DC 1 1_555 A DNR 19 1_555 3.149 1.137 -0.106 -94.701 146.671 168.405 0.575 -1.570 -0.181 73.347 47.358 179.453 2 AA_DNR7DC1:DNR19DC15_AA A 7 ? A 15 ? A 1 ? A 19 ? 1 A DC 1 1_555 A DNR 19 1_555 A DNR 6 1_555 A DC 14 1_555 2.331 2.569 0.248 125.856 -121.695 -123.960 -1.240 1.212 0.271 61.048 63.135 -177.684 3 AA_DC1DNR6:DC14DNR19_AA A 1 ? A 19 ? A 6 ? A 14 ? 1 A DNR 6 1_555 A DC 14 1_555 A DNR 2 1_555 A DC 20 1_555 1.637 -2.606 -0.219 148.862 95.837 178.562 -1.302 -0.820 -0.219 47.918 -74.431 179.963 4 AA_DNR6DNR2:DC20DC14_AA A 6 ? A 14 ? A 2 ? A 20 ? 1 A DNR 2 1_555 A DC 20 1_555 A DG 3 1_555 A DT 13 1_555 2.247 4.980 2.360 3.232 18.925 150.645 2.517 -1.151 2.588 9.775 -1.669 151.065 5 AA_DNR2DG3:DT13DC20_AA A 2 ? A 20 ? A 3 ? A 13 ? # _pdbx_audit_support.funding_organization 'Spanish Ministry of Science, Innovation, and Universities' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? #