HEADER HYDROLASE 24-NOV-22 8BS3 TITLE STRUCTURE OF USP36 IN COMPLEX WITH FUBI-PA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 36; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 36,UBIQUITIN THIOESTERASE 36, COMPND 5 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 36; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 40S RIBOSOMAL PROTEIN S30; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: SMALL RIBOSOMAL SUBUNIT PROTEIN ES30; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP36, KIAA1453; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: FAU; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS USP, USP36, UBIQUITIN, FUBI, S30, FAU, PROBE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.O'DEA,M.GERSCH REVDAT 4 15-NOV-23 8BS3 1 JRNL REVDAT 3 08-NOV-23 8BS3 1 JRNL REVDAT 2 26-JUL-23 8BS3 1 JRNL REVDAT 1 12-JUL-23 8BS3 0 JRNL AUTH R.O'DEA,N.KAZI,A.HOFFMANN-BENITO,Z.ZHAO,S.RECKNAGEL, JRNL AUTH 2 K.WENDRICH,P.JANNING,M.GERSCH JRNL TITL MOLECULAR BASIS FOR UBIQUITIN/FUBI CROSS-REACTIVITY IN USP16 JRNL TITL 2 AND USP36. JRNL REF NAT.CHEM.BIOL. V. 19 1394 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 37443395 JRNL DOI 10.1038/S41589-023-01388-1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 45230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.6300 - 5.5400 0.99 2686 143 0.2109 0.2217 REMARK 3 2 5.5400 - 4.4000 0.99 2727 134 0.1639 0.1991 REMARK 3 3 4.4000 - 3.8400 0.98 2672 133 0.1410 0.1410 REMARK 3 4 3.8400 - 3.4900 0.98 2672 156 0.1545 0.1949 REMARK 3 5 3.4900 - 3.2400 0.99 2725 111 0.1638 0.2189 REMARK 3 6 3.2400 - 3.0500 0.99 2668 137 0.1823 0.2011 REMARK 3 7 3.0500 - 2.9000 0.99 2676 138 0.1907 0.2169 REMARK 3 8 2.9000 - 2.7700 0.99 2686 161 0.2123 0.2417 REMARK 3 9 2.7700 - 2.6700 0.98 2673 155 0.2337 0.2708 REMARK 3 10 2.6700 - 2.5700 0.99 2715 116 0.2398 0.2881 REMARK 3 11 2.5700 - 2.4900 0.98 2659 172 0.2459 0.3001 REMARK 3 12 2.4900 - 2.4200 0.99 2678 127 0.2394 0.2882 REMARK 3 13 2.4200 - 2.3600 0.99 2669 126 0.2516 0.3104 REMARK 3 14 2.3600 - 2.3000 0.99 2721 120 0.2702 0.3052 REMARK 3 15 2.3000 - 2.2500 0.99 2652 180 0.2646 0.2979 REMARK 3 16 2.2500 - 2.2000 0.99 2695 147 0.2772 0.3018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.222 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.907 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3143 REMARK 3 ANGLE : 0.503 4263 REMARK 3 CHIRALITY : 0.039 485 REMARK 3 PLANARITY : 0.003 549 REMARK 3 DIHEDRAL : 15.488 1127 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5474 56.6570 8.7605 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.1613 REMARK 3 T33: 0.1654 T12: -0.0010 REMARK 3 T13: 0.0111 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.9905 L22: 0.7949 REMARK 3 L33: 1.2417 L12: -0.5124 REMARK 3 L13: 0.5371 L23: -0.1877 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: -0.0768 S13: -0.1853 REMARK 3 S21: -0.0328 S22: 0.0368 S23: 0.0668 REMARK 3 S31: 0.1411 S32: -0.0943 S33: -0.0412 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8820 84.2099 2.5375 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.2361 REMARK 3 T33: 0.2463 T12: 0.0307 REMARK 3 T13: -0.0061 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.5679 L22: 2.5281 REMARK 3 L33: 0.9349 L12: 0.0922 REMARK 3 L13: -0.0804 L23: 0.0416 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.0469 S13: 0.2007 REMARK 3 S21: -0.1659 S22: -0.0645 S23: 0.0818 REMARK 3 S31: -0.2371 S32: -0.0656 S33: 0.0641 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7190 71.5520 20.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.2614 REMARK 3 T33: 0.1202 T12: 0.0088 REMARK 3 T13: 0.0029 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 2.0762 L22: 2.2172 REMARK 3 L33: 1.4645 L12: -0.8181 REMARK 3 L13: 0.2566 L23: -0.5963 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.2822 S13: 0.0801 REMARK 3 S21: 0.2155 S22: 0.0549 S23: 0.0189 REMARK 3 S31: -0.2202 S32: 0.0548 S33: -0.0620 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2967 82.3795 -3.5039 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.1890 REMARK 3 T33: 0.2477 T12: -0.0108 REMARK 3 T13: -0.0181 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 6.2024 L22: 6.8770 REMARK 3 L33: 1.3130 L12: 0.6945 REMARK 3 L13: -1.6155 L23: 0.6386 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.2376 S13: 0.3497 REMARK 3 S21: -0.1612 S22: -0.0803 S23: -0.6772 REMARK 3 S31: -0.0926 S32: -0.0151 S33: 0.0854 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1818 71.1883 -5.5796 REMARK 3 T TENSOR REMARK 3 T11: 0.4135 T22: 0.1701 REMARK 3 T33: 0.2510 T12: 0.0180 REMARK 3 T13: 0.0408 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 6.5353 L22: 4.9286 REMARK 3 L33: 5.5728 L12: 4.2319 REMARK 3 L13: -3.1145 L23: -4.9151 REMARK 3 S TENSOR REMARK 3 S11: -0.3623 S12: 0.1136 S13: -0.5277 REMARK 3 S21: -0.8771 S22: 0.0114 S23: -0.5045 REMARK 3 S31: 0.6900 S32: -0.1394 S33: 0.3361 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9840 76.8760 -1.3864 REMARK 3 T TENSOR REMARK 3 T11: 0.1904 T22: 0.1922 REMARK 3 T33: 0.2296 T12: -0.0281 REMARK 3 T13: -0.0260 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.8676 L22: 4.2936 REMARK 3 L33: 0.6656 L12: -2.6923 REMARK 3 L13: 0.6244 L23: -1.5706 REMARK 3 S TENSOR REMARK 3 S11: -0.3780 S12: -0.1622 S13: 0.2901 REMARK 3 S21: -0.0067 S22: 0.2262 S23: -0.0626 REMARK 3 S31: -0.2528 S32: -0.1026 S33: 0.0919 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292126977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91883 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 3.6.1, DIALS 3.6.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 59.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MMT BUFFER PH 7.0, 25% (W/V) PEG REMARK 280 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.81300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.20450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.94600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.20450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.81300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.94600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 79 REMARK 465 PRO A 80 REMARK 465 ALA A 81 REMARK 465 ARG A 82 REMARK 465 ARG A 83 REMARK 465 GLN A 84 REMARK 465 GLY A 85 REMARK 465 SER A 86 REMARK 465 GLU A 87 REMARK 465 HIS A 88 REMARK 465 THR A 89 REMARK 465 TYR A 90 REMARK 465 GLU A 91 REMARK 465 SER A 92 REMARK 465 CYS A 93 REMARK 465 GLY A 94 REMARK 465 ASP A 95 REMARK 465 GLY A 96 REMARK 465 VAL A 97 REMARK 465 PRO A 98 REMARK 465 ALA A 99 REMARK 465 PRO A 100 REMARK 465 GLY A 425 REMARK 465 SER A 426 REMARK 465 LYS A 427 REMARK 465 LYS A 428 REMARK 465 SER A 429 REMARK 465 PRO A 430 REMARK 465 GLU A 431 REMARK 465 GLY A 432 REMARK 465 LEU A 433 REMARK 465 ILE A 434 REMARK 465 SER A 435 REMARK 465 ARG A 436 REMARK 465 THR A 437 REMARK 465 GLY A 438 REMARK 465 SER A 439 REMARK 465 SER A 440 REMARK 465 SER A 441 REMARK 465 LEU A 442 REMARK 465 PRO A 443 REMARK 465 GLY A 444 REMARK 465 ARG A 445 REMARK 465 PRO A 446 REMARK 465 SER A 447 REMARK 465 VAL A 448 REMARK 465 ILE A 449 REMARK 465 PRO A 450 REMARK 465 ASP A 451 REMARK 465 HIS A 452 REMARK 465 SER A 453 REMARK 465 LYS A 454 REMARK 465 LYS A 455 REMARK 465 ASN A 456 REMARK 465 ILE A 457 REMARK 465 GLY A 458 REMARK 465 ASN A 459 REMARK 465 GLY A 460 REMARK 465 ILE A 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 PHE A 334 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 335 OG REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 257 -63.14 -92.89 REMARK 500 LYS A 329 91.40 -67.63 REMARK 500 ASP A 399 -115.80 54.17 REMARK 500 ASN A 412 53.68 -117.91 REMARK 500 ALA B 7 -123.59 -107.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1135 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1136 DISTANCE = 5.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 CYS A 159 SG 104.3 REMARK 620 3 CYS A 165 SG 95.6 111.0 REMARK 620 4 CYS A 168 SG 118.3 110.6 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 255 SG REMARK 620 2 CYS A 258 SG 107.9 REMARK 620 3 CYS A 302 SG 112.5 106.4 REMARK 620 4 CYS A 305 SG 108.1 107.6 114.1 REMARK 620 N 1 2 3 DBREF 8BS3 A 80 461 UNP Q9P275 UBP36_HUMAN 80 461 DBREF 8BS3 B 1 73 UNP P62861 RS30_HUMAN 1 73 SEQADV 8BS3 GLY A 79 UNP Q9P275 EXPRESSION TAG SEQRES 1 A 383 GLY PRO ALA ARG ARG GLN GLY SER GLU HIS THR TYR GLU SEQRES 2 A 383 SER CYS GLY ASP GLY VAL PRO ALA PRO GLN LYS VAL LEU SEQRES 3 A 383 PHE PRO THR GLU ARG LEU SER LEU ARG TRP GLU ARG VAL SEQRES 4 A 383 PHE ARG VAL GLY ALA GLY LEU HIS ASN LEU GLY ASN THR SEQRES 5 A 383 CYS PHE LEU ASN ALA THR ILE GLN CYS LEU THR TYR THR SEQRES 6 A 383 PRO PRO LEU ALA ASN TYR LEU LEU SER LYS GLU HIS ALA SEQRES 7 A 383 ARG SER CYS HIS GLN GLY SER PHE CYS MET LEU CYS VAL SEQRES 8 A 383 MET GLN ASN HIS ILE VAL GLN ALA PHE ALA ASN SER GLY SEQRES 9 A 383 ASN ALA ILE LYS PRO VAL SER PHE ILE ARG ASP LEU LYS SEQRES 10 A 383 LYS ILE ALA ARG HIS PHE ARG PHE GLY ASN GLN GLU ASP SEQRES 11 A 383 ALA HIS GLU PHE LEU ARG TYR THR ILE ASP ALA MET GLN SEQRES 12 A 383 LYS ALA CYS LEU ASN GLY CYS ALA LYS LEU ASP ARG GLN SEQRES 13 A 383 THR GLN ALA THR THR LEU VAL HIS GLN ILE PHE GLY GLY SEQRES 14 A 383 TYR LEU ARG SER ARG VAL LYS CYS SER VAL CYS LYS SER SEQRES 15 A 383 VAL SER ASP THR TYR ASP PRO TYR LEU ASP VAL ALA LEU SEQRES 16 A 383 GLU ILE ARG GLN ALA ALA ASN ILE VAL ARG ALA LEU GLU SEQRES 17 A 383 LEU PHE VAL LYS ALA ASP VAL LEU SER GLY GLU ASN ALA SEQRES 18 A 383 TYR MET CYS ALA LYS CYS LYS LYS LYS VAL PRO ALA SER SEQRES 19 A 383 LYS ARG PHE THR ILE HIS ARG THR SER ASN VAL LEU THR SEQRES 20 A 383 LEU SER LEU LYS ARG PHE ALA ASN PHE SER GLY GLY LYS SEQRES 21 A 383 ILE THR LYS ASP VAL GLY TYR PRO GLU PHE LEU ASN ILE SEQRES 22 A 383 ARG PRO TYR MET SER GLN ASN ASN GLY ASP PRO VAL MET SEQRES 23 A 383 TYR GLY LEU TYR ALA VAL LEU VAL HIS SER GLY TYR SER SEQRES 24 A 383 CYS HIS ALA GLY HIS TYR TYR CYS TYR VAL LYS ALA SER SEQRES 25 A 383 ASN GLY GLN TRP TYR GLN MET ASN ASP SER LEU VAL HIS SEQRES 26 A 383 SER SER ASN VAL LYS VAL VAL LEU ASN GLN GLN ALA TYR SEQRES 27 A 383 VAL LEU PHE TYR LEU ARG ILE PRO GLY SER LYS LYS SER SEQRES 28 A 383 PRO GLU GLY LEU ILE SER ARG THR GLY SER SER SER LEU SEQRES 29 A 383 PRO GLY ARG PRO SER VAL ILE PRO ASP HIS SER LYS LYS SEQRES 30 A 383 ASN ILE GLY ASN GLY ILE SEQRES 1 B 73 MET GLN LEU PHE VAL ARG ALA GLN GLU LEU HIS THR PHE SEQRES 2 B 73 GLU VAL THR GLY GLN GLU THR VAL ALA GLN ILE LYS ALA SEQRES 3 B 73 HIS VAL ALA SER LEU GLU GLY ILE ALA PRO GLU ASP GLN SEQRES 4 B 73 VAL VAL LEU LEU ALA GLY ALA PRO LEU GLU ASP GLU ALA SEQRES 5 B 73 THR LEU GLY GLN CYS GLY VAL GLU ALA LEU THR THR LEU SEQRES 6 B 73 GLU VAL ALA GLY ARG MET LEU GLY HET ZN A 801 1 HET ZN A 802 1 HET AYE A 803 4 HETNAM ZN ZINC ION HETNAM AYE PROP-2-EN-1-AMINE HETSYN AYE ALLYLAMINE FORMUL 3 ZN 2(ZN 2+) FORMUL 5 AYE C3 H7 N FORMUL 6 HOH *269(H2 O) HELIX 1 AA1 THR A 130 TYR A 142 1 13 HELIX 2 AA2 THR A 143 SER A 152 1 10 HELIX 3 AA3 CYS A 165 ASN A 180 1 16 HELIX 4 AA4 PRO A 187 ASP A 193 1 7 HELIX 5 AA5 ASP A 193 ALA A 198 1 6 HELIX 6 AA6 ASP A 208 ASN A 226 1 19 HELIX 7 AA7 ASP A 232 ALA A 237 1 6 HELIX 8 AA8 THR A 239 GLY A 246 1 8 HELIX 9 AA9 ASN A 280 VAL A 289 1 10 HELIX 10 AB1 SER A 295 ALA A 299 5 5 HELIX 11 AB2 ARG A 352 MET A 355 5 4 HELIX 12 AB3 ASN A 406 LEU A 411 1 6 HELIX 13 AB4 THR B 20 GLY B 33 1 14 HELIX 14 AB5 ALA B 35 GLU B 37 5 3 HELIX 15 AB6 THR B 53 GLY B 58 1 6 SHEET 1 AA1 2 GLY A 123 LEU A 124 0 SHEET 2 AA1 2 ALA A 184 ILE A 185 1 O ILE A 185 N GLY A 123 SHEET 1 AA2 4 VAL A 261 TYR A 268 0 SHEET 2 AA2 4 GLY A 247 CYS A 255 -1 N LEU A 249 O ASP A 266 SHEET 3 AA2 4 ALA A 311 ARG A 319 -1 O THR A 316 N ARG A 250 SHEET 4 AA2 4 ASP A 292 LEU A 294 -1 N LEU A 294 O ALA A 311 SHEET 1 AA3 5 VAL A 271 LEU A 273 0 SHEET 2 AA3 5 VAL A 323 LEU A 328 1 O SER A 327 N LEU A 273 SHEET 3 AA3 5 ALA A 415 ILE A 423 -1 O LEU A 418 N LEU A 326 SHEET 4 AA3 5 MET A 364 SER A 374 -1 N GLY A 366 O LEU A 421 SHEET 5 AA3 5 PHE A 348 ASN A 350 -1 N LEU A 349 O TYR A 365 SHEET 1 AA4 7 VAL A 271 LEU A 273 0 SHEET 2 AA4 7 VAL A 323 LEU A 328 1 O SER A 327 N LEU A 273 SHEET 3 AA4 7 ALA A 415 ILE A 423 -1 O LEU A 418 N LEU A 326 SHEET 4 AA4 7 MET A 364 SER A 374 -1 N GLY A 366 O LEU A 421 SHEET 5 AA4 7 HIS A 382 LYS A 388 -1 O HIS A 382 N SER A 374 SHEET 6 AA4 7 TRP A 394 ASN A 398 -1 O TYR A 395 N VAL A 387 SHEET 7 AA4 7 LEU A 401 SER A 405 -1 O HIS A 403 N GLN A 396 SHEET 1 AA5 2 TYR A 300 CYS A 302 0 SHEET 2 AA5 2 LYS A 307 VAL A 309 -1 O VAL A 309 N TYR A 300 SHEET 1 AA6 5 LEU B 10 GLU B 14 0 SHEET 2 AA6 5 GLN B 2 ARG B 6 -1 N LEU B 3 O PHE B 13 SHEET 3 AA6 5 THR B 64 GLY B 69 1 O LEU B 65 N PHE B 4 SHEET 4 AA6 5 GLN B 39 LEU B 43 -1 N LEU B 42 O GLU B 66 SHEET 5 AA6 5 ALA B 46 PRO B 47 -1 O ALA B 46 N LEU B 43 LINK SG CYS A 131 C2 AYE A 803 1555 1555 1.81 LINK N1 AYE A 803 C GLY B 73 1555 1555 1.47 LINK NE2 HIS A 155 ZN ZN A 801 1555 1555 2.03 LINK SG CYS A 159 ZN ZN A 801 1555 1555 2.31 LINK SG CYS A 165 ZN ZN A 801 1555 1555 2.31 LINK SG CYS A 168 ZN ZN A 801 1555 1555 2.31 LINK SG CYS A 255 ZN ZN A 802 1555 1555 2.33 LINK SG CYS A 258 ZN ZN A 802 1555 1555 2.32 LINK SG CYS A 302 ZN ZN A 802 1555 1555 2.33 LINK SG CYS A 305 ZN ZN A 802 1555 1555 2.33 CRYST1 63.626 75.892 96.409 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010372 0.00000