HEADER HYDROLASE 24-NOV-22 8BS9 TITLE STRUCTURE OF USP36 IN COMPLEX WITH UBIQUITIN-PA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 36; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 36,UBIQUITIN THIOESTERASE 36, COMPND 5 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 36; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: POLYUBIQUITIN-B; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP36, KIAA1453; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS USP, USP36, UBIQUITIN, FUBI, S30, FAU, PROBE, DUB, DUBS, KEYWDS 2 DEUBIQUITINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.O'DEA,M.GERSCH REVDAT 4 15-NOV-23 8BS9 1 JRNL REVDAT 3 08-NOV-23 8BS9 1 JRNL REVDAT 2 26-JUL-23 8BS9 1 JRNL REVDAT 1 12-JUL-23 8BS9 0 JRNL AUTH R.O'DEA,N.KAZI,A.HOFFMANN-BENITO,Z.ZHAO,S.RECKNAGEL, JRNL AUTH 2 K.WENDRICH,P.JANNING,M.GERSCH JRNL TITL MOLECULAR BASIS FOR UBIQUITIN/FUBI CROSS-REACTIVITY IN USP16 JRNL TITL 2 AND USP36. JRNL REF NAT.CHEM.BIOL. V. 19 1394 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 37443395 JRNL DOI 10.1038/S41589-023-01388-1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 152753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 7607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2400 - 5.9000 0.97 4813 221 0.1777 0.1754 REMARK 3 2 5.9000 - 4.6800 0.97 4847 226 0.1474 0.1913 REMARK 3 3 4.6800 - 4.0900 0.98 4888 221 0.1212 0.1843 REMARK 3 4 4.0900 - 3.7200 0.98 4846 277 0.1329 0.1534 REMARK 3 5 3.7200 - 3.4500 0.99 4835 266 0.1383 0.1673 REMARK 3 6 3.4500 - 3.2500 0.99 4897 241 0.1521 0.1779 REMARK 3 7 3.2500 - 3.0900 0.97 4776 266 0.1547 0.1964 REMARK 3 8 3.0900 - 2.9500 0.98 4804 243 0.1579 0.2175 REMARK 3 9 2.9500 - 2.8400 0.99 4865 278 0.1613 0.2117 REMARK 3 10 2.8400 - 2.7400 0.99 4878 309 0.1658 0.2273 REMARK 3 11 2.7400 - 2.6500 0.99 4799 274 0.1791 0.2161 REMARK 3 12 2.6500 - 2.5800 0.98 4837 268 0.1772 0.2209 REMARK 3 13 2.5800 - 2.5100 0.99 4896 221 0.1766 0.1847 REMARK 3 14 2.5100 - 2.4500 0.98 4844 285 0.1773 0.2245 REMARK 3 15 2.4500 - 2.3900 0.98 4902 248 0.1777 0.2457 REMARK 3 16 2.3900 - 2.3400 0.99 4864 236 0.1871 0.2374 REMARK 3 17 2.3400 - 2.3000 0.98 4891 237 0.1847 0.2364 REMARK 3 18 2.3000 - 2.2500 0.98 4841 278 0.2020 0.2788 REMARK 3 19 2.2500 - 2.2100 0.97 4746 282 0.2039 0.2502 REMARK 3 20 2.2100 - 2.1700 0.97 4744 250 0.2121 0.2552 REMARK 3 21 2.1700 - 2.1400 0.97 4871 270 0.2234 0.2748 REMARK 3 22 2.1400 - 2.1100 0.98 4741 268 0.2311 0.2802 REMARK 3 23 2.1100 - 2.0800 0.97 4877 242 0.2420 0.3003 REMARK 3 24 2.0800 - 2.0500 0.98 4802 239 0.2430 0.2782 REMARK 3 25 2.0500 - 2.0200 0.98 4951 232 0.2600 0.2969 REMARK 3 26 2.0200 - 1.9900 0.98 4754 267 0.2734 0.3018 REMARK 3 27 1.9900 - 1.9700 0.98 4911 214 0.2904 0.2937 REMARK 3 28 1.9700 - 1.9400 0.97 4849 198 0.3000 0.3445 REMARK 3 29 1.9400 - 1.9200 0.98 4725 270 0.3158 0.3666 REMARK 3 30 1.9200 - 1.9000 0.97 4852 280 0.3278 0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.238 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.031 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6326 REMARK 3 ANGLE : 1.007 8586 REMARK 3 CHIRALITY : 0.064 978 REMARK 3 PLANARITY : 0.009 1107 REMARK 3 DIHEDRAL : 14.598 2261 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292126990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999860 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JAN 10, 2022 REMARK 200 BUILT=20220110 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 152836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M POTASSIUM FORMATE, 14% (W/V) PEG REMARK 280 3350, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.65350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 79 REMARK 465 PRO A 80 REMARK 465 ALA A 81 REMARK 465 ARG A 82 REMARK 465 ARG A 83 REMARK 465 GLN A 84 REMARK 465 GLY A 85 REMARK 465 SER A 86 REMARK 465 GLU A 87 REMARK 465 HIS A 88 REMARK 465 THR A 89 REMARK 465 TYR A 90 REMARK 465 GLU A 91 REMARK 465 SER A 92 REMARK 465 CYS A 93 REMARK 465 GLY A 94 REMARK 465 ASP A 95 REMARK 465 GLY A 96 REMARK 465 VAL A 97 REMARK 465 PRO A 98 REMARK 465 ALA A 99 REMARK 465 PRO A 100 REMARK 465 GLY C 79 REMARK 465 PRO C 80 REMARK 465 ALA C 81 REMARK 465 ARG C 82 REMARK 465 ARG C 83 REMARK 465 GLN C 84 REMARK 465 GLY C 85 REMARK 465 SER C 86 REMARK 465 GLU C 87 REMARK 465 HIS C 88 REMARK 465 THR C 89 REMARK 465 TYR C 90 REMARK 465 GLU C 91 REMARK 465 SER C 92 REMARK 465 CYS C 93 REMARK 465 GLY C 94 REMARK 465 ASP C 95 REMARK 465 GLY C 96 REMARK 465 VAL C 97 REMARK 465 PRO C 98 REMARK 465 ALA C 99 REMARK 465 PRO C 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 SER A 335 OG REMARK 470 ASP A 342 CG OD1 OD2 REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLN C 101 CG CD OE1 NE2 REMARK 470 LYS C 102 CG CD CE NZ REMARK 470 ARG C 113 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 153 CG CD CE NZ REMARK 470 ARG C 157 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 199 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 222 CG CD CE NZ REMARK 470 LYS C 230 CG CD CE NZ REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 290 CG CD CE NZ REMARK 470 LYS C 304 CG CD CE NZ REMARK 470 LYS C 306 CG CD CE NZ REMARK 470 LYS C 307 CG CD CE NZ REMARK 470 PHE C 334 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER C 335 OG REMARK 470 GLU C 347 CG CD OE1 OE2 REMARK 470 HIS C 403 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 408 CG CD CE NZ REMARK 470 LYS D 11 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 163 -159.11 -91.48 REMARK 500 ARG A 330 40.94 -100.05 REMARK 500 ASP A 399 -119.11 45.23 REMARK 500 ASN A 412 56.26 -114.86 REMARK 500 ASN B 60 48.87 39.47 REMARK 500 LEU B 71 -136.52 -108.08 REMARK 500 ARG C 157 2.27 -65.24 REMARK 500 ARG C 330 40.41 -96.15 REMARK 500 ASP C 399 -121.20 45.43 REMARK 500 ASN C 412 47.73 -108.97 REMARK 500 LEU D 71 -135.94 -108.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1190 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 CYS A 159 SG 107.0 REMARK 620 3 CYS A 165 SG 109.4 112.5 REMARK 620 4 CYS A 168 SG 104.0 106.4 116.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 255 SG REMARK 620 2 CYS A 258 SG 103.3 REMARK 620 3 CYS A 302 SG 111.1 105.7 REMARK 620 4 CYS A 305 SG 108.0 108.9 118.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 155 NE2 REMARK 620 2 CYS C 159 SG 108.1 REMARK 620 3 CYS C 165 SG 109.2 113.0 REMARK 620 4 CYS C 168 SG 104.7 104.3 117.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 255 SG REMARK 620 2 CYS C 258 SG 105.4 REMARK 620 3 CYS C 302 SG 111.4 107.3 REMARK 620 4 CYS C 305 SG 107.7 109.4 115.2 REMARK 620 N 1 2 3 DBREF 8BS9 A 80 424 UNP Q9P275 UBP36_HUMAN 80 424 DBREF 8BS9 B 1 75 UNP P0CG47 UBB_HUMAN 1 75 DBREF 8BS9 C 80 424 UNP Q9P275 UBP36_HUMAN 80 424 DBREF 8BS9 D 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 8BS9 GLY A 79 UNP Q9P275 EXPRESSION TAG SEQADV 8BS9 GLY C 79 UNP Q9P275 EXPRESSION TAG SEQRES 1 A 346 GLY PRO ALA ARG ARG GLN GLY SER GLU HIS THR TYR GLU SEQRES 2 A 346 SER CYS GLY ASP GLY VAL PRO ALA PRO GLN LYS VAL LEU SEQRES 3 A 346 PHE PRO THR GLU ARG LEU SER LEU ARG TRP GLU ARG VAL SEQRES 4 A 346 PHE ARG VAL GLY ALA GLY LEU HIS ASN LEU GLY ASN THR SEQRES 5 A 346 CYS PHE LEU ASN ALA THR ILE GLN CYS LEU THR TYR THR SEQRES 6 A 346 PRO PRO LEU ALA ASN TYR LEU LEU SER LYS GLU HIS ALA SEQRES 7 A 346 ARG SER CYS HIS GLN GLY SER PHE CYS MET LEU CYS VAL SEQRES 8 A 346 MET GLN ASN HIS ILE VAL GLN ALA PHE ALA ASN SER GLY SEQRES 9 A 346 ASN ALA ILE LYS PRO VAL SER PHE ILE ARG ASP LEU LYS SEQRES 10 A 346 LYS ILE ALA ARG HIS PHE ARG PHE GLY ASN GLN GLU ASP SEQRES 11 A 346 ALA HIS GLU PHE LEU ARG TYR THR ILE ASP ALA MET GLN SEQRES 12 A 346 LYS ALA CYS LEU ASN GLY CYS ALA LYS LEU ASP ARG GLN SEQRES 13 A 346 THR GLN ALA THR THR LEU VAL HIS GLN ILE PHE GLY GLY SEQRES 14 A 346 TYR LEU ARG SER ARG VAL LYS CYS SER VAL CYS LYS SER SEQRES 15 A 346 VAL SER ASP THR TYR ASP PRO TYR LEU ASP VAL ALA LEU SEQRES 16 A 346 GLU ILE ARG GLN ALA ALA ASN ILE VAL ARG ALA LEU GLU SEQRES 17 A 346 LEU PHE VAL LYS ALA ASP VAL LEU SER GLY GLU ASN ALA SEQRES 18 A 346 TYR MET CYS ALA LYS CYS LYS LYS LYS VAL PRO ALA SER SEQRES 19 A 346 LYS ARG PHE THR ILE HIS ARG THR SER ASN VAL LEU THR SEQRES 20 A 346 LEU SER LEU LYS ARG PHE ALA ASN PHE SER GLY GLY LYS SEQRES 21 A 346 ILE THR LYS ASP VAL GLY TYR PRO GLU PHE LEU ASN ILE SEQRES 22 A 346 ARG PRO TYR MET SER GLN ASN ASN GLY ASP PRO VAL MET SEQRES 23 A 346 TYR GLY LEU TYR ALA VAL LEU VAL HIS SER GLY TYR SER SEQRES 24 A 346 CYS HIS ALA GLY HIS TYR TYR CYS TYR VAL LYS ALA SER SEQRES 25 A 346 ASN GLY GLN TRP TYR GLN MET ASN ASP SER LEU VAL HIS SEQRES 26 A 346 SER SER ASN VAL LYS VAL VAL LEU ASN GLN GLN ALA TYR SEQRES 27 A 346 VAL LEU PHE TYR LEU ARG ILE PRO SEQRES 1 B 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 C 346 GLY PRO ALA ARG ARG GLN GLY SER GLU HIS THR TYR GLU SEQRES 2 C 346 SER CYS GLY ASP GLY VAL PRO ALA PRO GLN LYS VAL LEU SEQRES 3 C 346 PHE PRO THR GLU ARG LEU SER LEU ARG TRP GLU ARG VAL SEQRES 4 C 346 PHE ARG VAL GLY ALA GLY LEU HIS ASN LEU GLY ASN THR SEQRES 5 C 346 CYS PHE LEU ASN ALA THR ILE GLN CYS LEU THR TYR THR SEQRES 6 C 346 PRO PRO LEU ALA ASN TYR LEU LEU SER LYS GLU HIS ALA SEQRES 7 C 346 ARG SER CYS HIS GLN GLY SER PHE CYS MET LEU CYS VAL SEQRES 8 C 346 MET GLN ASN HIS ILE VAL GLN ALA PHE ALA ASN SER GLY SEQRES 9 C 346 ASN ALA ILE LYS PRO VAL SER PHE ILE ARG ASP LEU LYS SEQRES 10 C 346 LYS ILE ALA ARG HIS PHE ARG PHE GLY ASN GLN GLU ASP SEQRES 11 C 346 ALA HIS GLU PHE LEU ARG TYR THR ILE ASP ALA MET GLN SEQRES 12 C 346 LYS ALA CYS LEU ASN GLY CYS ALA LYS LEU ASP ARG GLN SEQRES 13 C 346 THR GLN ALA THR THR LEU VAL HIS GLN ILE PHE GLY GLY SEQRES 14 C 346 TYR LEU ARG SER ARG VAL LYS CYS SER VAL CYS LYS SER SEQRES 15 C 346 VAL SER ASP THR TYR ASP PRO TYR LEU ASP VAL ALA LEU SEQRES 16 C 346 GLU ILE ARG GLN ALA ALA ASN ILE VAL ARG ALA LEU GLU SEQRES 17 C 346 LEU PHE VAL LYS ALA ASP VAL LEU SER GLY GLU ASN ALA SEQRES 18 C 346 TYR MET CYS ALA LYS CYS LYS LYS LYS VAL PRO ALA SER SEQRES 19 C 346 LYS ARG PHE THR ILE HIS ARG THR SER ASN VAL LEU THR SEQRES 20 C 346 LEU SER LEU LYS ARG PHE ALA ASN PHE SER GLY GLY LYS SEQRES 21 C 346 ILE THR LYS ASP VAL GLY TYR PRO GLU PHE LEU ASN ILE SEQRES 22 C 346 ARG PRO TYR MET SER GLN ASN ASN GLY ASP PRO VAL MET SEQRES 23 C 346 TYR GLY LEU TYR ALA VAL LEU VAL HIS SER GLY TYR SER SEQRES 24 C 346 CYS HIS ALA GLY HIS TYR TYR CYS TYR VAL LYS ALA SER SEQRES 25 C 346 ASN GLY GLN TRP TYR GLN MET ASN ASP SER LEU VAL HIS SEQRES 26 C 346 SER SER ASN VAL LYS VAL VAL LEU ASN GLN GLN ALA TYR SEQRES 27 C 346 VAL LEU PHE TYR LEU ARG ILE PRO SEQRES 1 D 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET ZN A 801 1 HET ZN A 802 1 HET AYE A 803 4 HET NA A 804 1 HET ZN C 801 1 HET ZN C 802 1 HET AYE C 803 4 HET NA C 804 1 HETNAM ZN ZINC ION HETNAM AYE PROP-2-EN-1-AMINE HETNAM NA SODIUM ION HETSYN AYE ALLYLAMINE FORMUL 5 ZN 4(ZN 2+) FORMUL 7 AYE 2(C3 H7 N) FORMUL 8 NA 2(NA 1+) FORMUL 13 HOH *671(H2 O) HELIX 1 AA1 THR A 130 TYR A 142 1 13 HELIX 2 AA2 THR A 143 SER A 152 1 10 HELIX 3 AA3 CYS A 165 ALA A 179 1 15 HELIX 4 AA4 PRO A 187 ASP A 193 1 7 HELIX 5 AA5 ASP A 193 ALA A 198 1 6 HELIX 6 AA6 ALA A 209 ASN A 226 1 18 HELIX 7 AA7 ASP A 232 ALA A 237 1 6 HELIX 8 AA8 THR A 239 GLY A 246 1 8 HELIX 9 AA9 ASN A 280 VAL A 289 1 10 HELIX 10 AB1 SER A 295 ALA A 299 5 5 HELIX 11 AB2 ARG A 352 MET A 355 5 4 HELIX 12 AB3 ASN A 406 LEU A 411 1 6 HELIX 13 AB4 THR B 22 GLY B 35 1 14 HELIX 14 AB5 PRO B 37 GLN B 41 5 5 HELIX 15 AB6 LEU B 56 ASN B 60 5 5 HELIX 16 AB7 THR C 130 TYR C 142 1 13 HELIX 17 AB8 THR C 143 SER C 152 1 10 HELIX 18 AB9 CYS C 165 ALA C 179 1 15 HELIX 19 AC1 PRO C 187 ASP C 193 1 7 HELIX 20 AC2 ASP C 193 ALA C 198 1 6 HELIX 21 AC3 ALA C 209 ASN C 226 1 18 HELIX 22 AC4 ASP C 232 ALA C 237 1 6 HELIX 23 AC5 THR C 239 GLY C 246 1 8 HELIX 24 AC6 ASN C 280 VAL C 289 1 10 HELIX 25 AC7 SER C 295 ALA C 299 5 5 HELIX 26 AC8 ARG C 352 MET C 355 5 4 HELIX 27 AC9 ASN C 406 LEU C 411 1 6 HELIX 28 AD1 THR D 22 GLY D 35 1 14 HELIX 29 AD2 PRO D 37 GLN D 41 5 5 HELIX 30 AD3 THR D 55 ASN D 60 5 6 SHEET 1 AA1 2 GLY A 123 LEU A 124 0 SHEET 2 AA1 2 ALA A 184 ILE A 185 1 O ILE A 185 N GLY A 123 SHEET 1 AA2 2 GLU A 207 ASP A 208 0 SHEET 2 AA2 2 ARG B 74 GLY B 75 -1 O GLY B 75 N GLU A 207 SHEET 1 AA3 4 VAL A 261 TYR A 268 0 SHEET 2 AA3 4 GLY A 247 CYS A 255 -1 N VAL A 253 O SER A 262 SHEET 3 AA3 4 ALA A 311 ARG A 319 -1 O ARG A 314 N ARG A 252 SHEET 4 AA3 4 ASP A 292 LEU A 294 -1 N ASP A 292 O LYS A 313 SHEET 1 AA4 5 VAL A 271 GLU A 274 0 SHEET 2 AA4 5 VAL A 323 LYS A 329 1 O LYS A 329 N LEU A 273 SHEET 3 AA4 5 ALA A 415 ARG A 422 -1 O LEU A 418 N LEU A 326 SHEET 4 AA4 5 MET A 364 SER A 374 -1 N LEU A 371 O TYR A 416 SHEET 5 AA4 5 PHE A 348 ASN A 350 -1 N LEU A 349 O TYR A 365 SHEET 1 AA5 7 VAL A 271 GLU A 274 0 SHEET 2 AA5 7 VAL A 323 LYS A 329 1 O LYS A 329 N LEU A 273 SHEET 3 AA5 7 ALA A 415 ARG A 422 -1 O LEU A 418 N LEU A 326 SHEET 4 AA5 7 MET A 364 SER A 374 -1 N LEU A 371 O TYR A 416 SHEET 5 AA5 7 HIS A 382 LYS A 388 -1 O HIS A 382 N SER A 374 SHEET 6 AA5 7 TRP A 394 ASN A 398 -1 O MET A 397 N CYS A 385 SHEET 7 AA5 7 LEU A 401 SER A 404 -1 O LEU A 401 N ASN A 398 SHEET 1 AA6 2 TYR A 300 CYS A 302 0 SHEET 2 AA6 2 LYS A 307 VAL A 309 -1 O VAL A 309 N TYR A 300 SHEET 1 AA7 5 THR B 12 GLU B 16 0 SHEET 2 AA7 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA7 5 THR B 66 VAL B 70 1 O LEU B 67 N PHE B 4 SHEET 4 AA7 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA7 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA8 2 GLY C 123 LEU C 124 0 SHEET 2 AA8 2 ALA C 184 ILE C 185 1 O ILE C 185 N GLY C 123 SHEET 1 AA9 2 GLU C 207 ASP C 208 0 SHEET 2 AA9 2 ARG D 74 GLY D 75 -1 O GLY D 75 N GLU C 207 SHEET 1 AB1 4 VAL C 261 TYR C 268 0 SHEET 2 AB1 4 GLY C 247 CYS C 255 -1 N SER C 251 O THR C 264 SHEET 3 AB1 4 ALA C 311 ARG C 319 -1 O THR C 316 N ARG C 250 SHEET 4 AB1 4 ASP C 292 LEU C 294 -1 N ASP C 292 O LYS C 313 SHEET 1 AB2 5 VAL C 271 GLU C 274 0 SHEET 2 AB2 5 VAL C 323 LYS C 329 1 O LYS C 329 N LEU C 273 SHEET 3 AB2 5 ALA C 415 ARG C 422 -1 O LEU C 418 N LEU C 326 SHEET 4 AB2 5 MET C 364 SER C 374 -1 N TYR C 368 O PHE C 419 SHEET 5 AB2 5 PHE C 348 ASN C 350 -1 N LEU C 349 O TYR C 365 SHEET 1 AB3 7 VAL C 271 GLU C 274 0 SHEET 2 AB3 7 VAL C 323 LYS C 329 1 O LYS C 329 N LEU C 273 SHEET 3 AB3 7 ALA C 415 ARG C 422 -1 O LEU C 418 N LEU C 326 SHEET 4 AB3 7 MET C 364 SER C 374 -1 N TYR C 368 O PHE C 419 SHEET 5 AB3 7 HIS C 382 LYS C 388 -1 O HIS C 382 N SER C 374 SHEET 6 AB3 7 TRP C 394 ASN C 398 -1 O MET C 397 N CYS C 385 SHEET 7 AB3 7 LEU C 401 SER C 404 -1 O LEU C 401 N ASN C 398 SHEET 1 AB4 2 TYR C 300 CYS C 302 0 SHEET 2 AB4 2 LYS C 307 VAL C 309 -1 O VAL C 309 N TYR C 300 SHEET 1 AB5 5 THR D 12 GLU D 16 0 SHEET 2 AB5 5 GLN D 2 LYS D 6 -1 N ILE D 3 O LEU D 15 SHEET 3 AB5 5 THR D 66 VAL D 70 1 O LEU D 67 N PHE D 4 SHEET 4 AB5 5 ARG D 42 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 AB5 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK SG CYS A 131 C2 AYE A 803 1555 1555 1.81 LINK N1 AYE A 803 C GLY B 75 1555 1555 1.33 LINK SG CYS C 131 C2 AYE C 803 1555 1555 1.82 LINK N1 AYE C 803 C GLY D 75 1555 1555 1.38 LINK NE2 HIS A 155 ZN ZN A 801 1555 1555 2.01 LINK SG CYS A 159 ZN ZN A 801 1555 1555 2.35 LINK SG CYS A 165 ZN ZN A 801 1555 1555 2.32 LINK SG CYS A 168 ZN ZN A 801 1555 1555 2.32 LINK SG CYS A 255 ZN ZN A 802 1555 1555 2.28 LINK SG CYS A 258 ZN ZN A 802 1555 1555 2.39 LINK SG CYS A 302 ZN ZN A 802 1555 1555 2.38 LINK SG CYS A 305 ZN ZN A 802 1555 1555 2.38 LINK NE2 HIS C 155 ZN ZN C 801 1555 1555 1.96 LINK SG CYS C 159 ZN ZN C 801 1555 1555 2.31 LINK SG CYS C 165 ZN ZN C 801 1555 1555 2.33 LINK SG CYS C 168 ZN ZN C 801 1555 1555 2.33 LINK SG CYS C 255 ZN ZN C 802 1555 1555 2.30 LINK SG CYS C 258 ZN ZN C 802 1555 1555 2.33 LINK SG CYS C 302 ZN ZN C 802 1555 1555 2.36 LINK SG CYS C 305 ZN ZN C 802 1555 1555 2.38 CRYST1 75.743 65.307 103.411 90.00 93.27 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013203 0.000000 0.000753 0.00000 SCALE2 0.000000 0.015312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009686 0.00000