HEADER VIRAL PROTEIN 25-NOV-22 8BSE TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN (RBD) IN TITLE 2 COMPLEX WITH 1D1 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 1D1 FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 1D1 FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F KEYWDS ANTIBODY, VIRUS, COMPLEX, SARS-COV-2, VIRAL PROTEIN COMPLEX, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,Y.R.KIMBUNG,D.FOCHT,T.PISITKUN REVDAT 2 18-OCT-23 8BSE 1 SOURCE JRNL REVDAT 1 17-MAY-23 8BSE 0 JRNL AUTH C.BOONKRAI,T.S.COTRONE,W.CHAISURIYONG,T.TANTAWICHIEN, JRNL AUTH 2 U.THISYAKORN,S.FERNANDEZ,T.HUNSAWONG,M.REED, JRNL AUTH 3 T.WONGTANGPRASERT,T.AUDOMSUN,T.PHAKHAM,C.ATTAKITBANCHA, JRNL AUTH 4 P.SAELAO,D.FOCHT,R.KIMBUNG,M.WELIN,A.A.MALIK,T.PISITKUN, JRNL AUTH 5 N.SRISAWAT JRNL TITL EFFICACY OF THE COMBINATION OF MONOCLONAL ANTIBODIES AGAINST JRNL TITL 2 THE SARS-COV-2 BETA AND DELTA VARIANTS. JRNL REF PLOS ONE V. 18 84173 2023 JRNL REFN ESSN 1932-6203 JRNL PMID 37141227 JRNL DOI 10.1371/JOURNAL.PONE.0284173 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5066 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 499 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 2.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4978 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4543 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6783 ; 1.707 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10512 ; 1.383 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 7.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;35.534 ;23.053 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 772 ;14.737 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.046 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6419 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1150 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2512 ; 3.568 ; 4.355 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2510 ; 3.556 ; 4.353 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3144 ; 4.646 ; 6.504 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3145 ; 4.646 ; 6.505 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2466 ; 4.875 ; 4.781 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2467 ; 4.875 ; 4.781 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3640 ; 6.920 ; 6.984 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5376 ; 8.650 ;51.346 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5377 ; 8.649 ;51.351 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8BSE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73863 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 2.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG SMEAR BROAD 0.08 M MGCL2 0.08 REMARK 280 M TRI-SODIUM CITRATE 0.1 M BIS-TRIS PH 6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.08850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.69600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.00900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.69600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.08850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.00900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 319 REMARK 465 VAL A 320 REMARK 465 GLN A 321 REMARK 465 PRO A 322 REMARK 465 THR A 323 REMARK 465 GLU A 324 REMARK 465 SER A 325 REMARK 465 ILE A 326 REMARK 465 VAL A 327 REMARK 465 ARG A 328 REMARK 465 PHE A 329 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 ASN A 334 REMARK 465 ALA A 372 REMARK 465 LEU A 518 REMARK 465 HIS A 519 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 THR A 531 REMARK 465 ASN A 532 REMARK 465 LEU A 533 REMARK 465 VAL A 534 REMARK 465 LYS A 535 REMARK 465 ASN A 536 REMARK 465 LYS A 537 REMARK 465 CYS A 538 REMARK 465 VAL A 539 REMARK 465 ASN A 540 REMARK 465 PHE A 541 REMARK 465 SER A 542 REMARK 465 GLY A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 SER H 217 REMARK 465 CYS H 218 REMARK 465 ASP H 219 REMARK 465 LYS H 220 REMARK 465 THR H 221 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS L 189 O HOH L 401 2.10 REMARK 500 OE1 GLU A 406 O3 GOL A 602 2.15 REMARK 500 O ASN A 448 O HOH A 701 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 370 -49.19 -139.31 REMARK 500 ASN A 422 -58.53 -131.59 REMARK 500 ASP A 428 35.28 -99.08 REMARK 500 LYS H 131 33.93 -85.54 REMARK 500 ASP H 146 61.72 72.63 REMARK 500 ASN L 30 -124.97 61.97 REMARK 500 THR L 51 -53.75 79.67 REMARK 500 ALA L 67 151.02 177.52 REMARK 500 ASN L 138 65.59 64.36 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BSE A 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 DBREF 8BSE H 1 221 PDB 8BSE 8BSE 1 221 DBREF 8BSE L 1 214 PDB 8BSE 8BSE 1 214 SEQADV 8BSE SER A 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8BSE GLY A 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8BSE HIS A 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8BSE HIS A 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8BSE HIS A 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8BSE HIS A 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8BSE HIS A 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8BSE HIS A 549 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 231 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 A 231 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 A 231 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 A 231 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 A 231 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 A 231 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 A 231 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 A 231 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 A 231 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 A 231 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 A 231 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 A 231 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 A 231 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 A 231 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 A 231 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 A 231 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 A 231 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 18 A 231 ASN PHE SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 H 221 GLU VAL LEU LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 221 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 221 PHE THR VAL SER SER ASN TYR MET ILE TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER LEU ILE TYR SEQRES 5 H 221 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 221 ARG PHE ILE ILE SER ARG ASP SER SER LYS ASN THR LEU SEQRES 7 H 221 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 221 VAL TYR TYR CYS ALA ARG GLU PRO TYR GLY ASP LYS ALA SEQRES 9 H 221 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER SEQRES 10 H 221 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 11 H 221 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 12 H 221 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 13 H 221 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 14 H 221 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 15 H 221 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 16 H 221 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 17 H 221 VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS THR SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS GLN ALA SER SEQRES 3 L 214 GLN ASP ILE ASN LYS TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS PRO LEU ILE SER ASP THR SER SEQRES 5 L 214 ASN LEU GLN PRO GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY ALA GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASP ASN LEU PRO ILE THR PHE GLY GLN GLY THR ARG LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET NAG A 601 14 HET GOL A 602 6 HET GOL H 301 6 HET GOL H 302 6 HET GOL H 303 6 HET TRS H 304 8 HET GOL L 301 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 4 NAG C8 H15 N O6 FORMUL 5 GOL 5(C3 H8 O3) FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 11 HOH *499(H2 O) HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 ASP A 364 TYR A 369 1 6 HELIX 4 AA4 THR A 385 ASP A 389 5 5 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 THR H 28 ASN H 32 5 5 HELIX 10 AB1 ASP H 61 LYS H 64 5 4 HELIX 11 AB2 ARG H 86 THR H 90 5 5 HELIX 12 AB3 SER H 158 ALA H 160 5 3 HELIX 13 AB4 SER H 189 LEU H 191 5 3 HELIX 14 AB5 LYS H 203 ASN H 206 5 4 HELIX 15 AB6 GLN L 79 ILE L 83 5 5 HELIX 16 AB7 SER L 121 SER L 127 1 7 HELIX 17 AB8 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 LEU H 3 SER H 7 0 SHEET 2 AA5 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA5 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA5 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA6 6 LEU H 11 ILE H 12 0 SHEET 2 AA6 6 THR H 109 VAL H 113 1 O THR H 112 N ILE H 12 SHEET 3 AA6 6 ALA H 91 ARG H 97 -1 N ALA H 91 O VAL H 111 SHEET 4 AA6 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA6 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA6 6 THR H 57 TYR H 59 -1 O PHE H 58 N LEU H 50 SHEET 1 AA7 4 LEU H 11 ILE H 12 0 SHEET 2 AA7 4 THR H 109 VAL H 113 1 O THR H 112 N ILE H 12 SHEET 3 AA7 4 ALA H 91 ARG H 97 -1 N ALA H 91 O VAL H 111 SHEET 4 AA7 4 ALA H 104 TRP H 105 -1 O ALA H 104 N ARG H 97 SHEET 1 AA8 4 SER H 122 LEU H 126 0 SHEET 2 AA8 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 122 SHEET 3 AA8 4 TYR H 178 PRO H 187 -1 O LEU H 180 N VAL H 144 SHEET 4 AA8 4 VAL H 165 THR H 167 -1 N HIS H 166 O VAL H 183 SHEET 1 AA9 4 SER H 122 LEU H 126 0 SHEET 2 AA9 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 122 SHEET 3 AA9 4 TYR H 178 PRO H 187 -1 O LEU H 180 N VAL H 144 SHEET 4 AA9 4 VAL H 171 LEU H 172 -1 N VAL H 171 O SER H 179 SHEET 1 AB1 3 THR H 153 TRP H 156 0 SHEET 2 AB1 3 ILE H 197 HIS H 202 -1 O ASN H 199 N SER H 155 SHEET 3 AB1 3 THR H 207 LYS H 212 -1 O VAL H 209 N VAL H 200 SHEET 1 AB2 4 MET L 4 SER L 7 0 SHEET 2 AB2 4 VAL L 19 ALA L 25 -1 O GLN L 24 N THR L 5 SHEET 3 AB2 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB2 4 PHE L 62 ALA L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB3 6 SER L 10 ALA L 13 0 SHEET 2 AB3 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB3 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AB3 6 LEU L 33 GLN L 38 -1 N ASN L 34 O GLN L 89 SHEET 5 AB3 6 LYS L 45 SER L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB3 6 ASN L 53 LEU L 54 -1 O ASN L 53 N SER L 49 SHEET 1 AB4 4 SER L 10 ALA L 13 0 SHEET 2 AB4 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB4 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AB4 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB5 4 SER L 114 PHE L 118 0 SHEET 2 AB5 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB5 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AB5 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB6 4 ALA L 153 LEU L 154 0 SHEET 2 AB6 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB6 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB6 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.08 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.17 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.08 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.10 SSBOND 5 CYS H 22 CYS H 95 1555 1555 2.12 SSBOND 6 CYS H 142 CYS H 198 1555 1555 2.05 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.28 SSBOND 8 CYS L 134 CYS L 194 1555 1555 2.13 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.46 CISPEP 1 GLU H 98 PRO H 99 0 -6.16 CISPEP 2 PHE H 148 PRO H 149 0 -8.10 CISPEP 3 GLU H 150 PRO H 151 0 -9.23 CISPEP 4 SER L 7 PRO L 8 0 -7.82 CISPEP 5 LEU L 94 PRO L 95 0 -0.74 CISPEP 6 TYR L 140 PRO L 141 0 1.42 CRYST1 56.177 110.018 149.392 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006694 0.00000