HEADER IMMUNE SYSTEM 25-NOV-22 8BSO TITLE CRYSTAL STRUCTURE OF ANTIBODY FAB WITH SIALAC-AMIDINE-LYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAR-1 FAB HEAVY CHAIN; COMPND 3 CHAIN: H, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BAR-1 FAB LIGHT CHAIN; COMPND 7 CHAIN: L, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 13 EXPRESSION_SYSTEM_CELL: HEK293 KEYWDS FAB, SIALAC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.MOYNIE,J.H.NAISMITH REVDAT 1 27-SEP-23 8BSO 0 JRNL AUTH L.MOYNIE,J.H.NAISMITH,Q.SATTENTAU,L.DEIMEL,A.KHAN,B.DAVIS, JRNL AUTH 2 A.BALDWIN,C.BUCHANAN JRNL TITL CRYSTAL STRUCTURE OF ANTIBODY FAB WITH SIALAC-AMIDINE-LYS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.5800 - 5.7600 1.00 2678 133 0.1531 0.1606 REMARK 3 2 5.7600 - 4.5700 1.00 2616 139 0.1342 0.1704 REMARK 3 3 4.5700 - 3.9900 1.00 2637 130 0.1304 0.1798 REMARK 3 4 3.9900 - 3.6300 1.00 2600 163 0.1538 0.1884 REMARK 3 5 3.6300 - 3.3700 1.00 2567 161 0.1629 0.1901 REMARK 3 6 3.3700 - 3.1700 1.00 2624 137 0.1810 0.2522 REMARK 3 7 3.1700 - 3.0100 1.00 2568 158 0.1917 0.2143 REMARK 3 8 3.0100 - 2.8800 1.00 2601 161 0.1894 0.2410 REMARK 3 9 2.8800 - 2.7700 1.00 2588 146 0.1944 0.2537 REMARK 3 10 2.7700 - 2.6700 1.00 2587 139 0.1931 0.2251 REMARK 3 11 2.6700 - 2.5900 1.00 2572 151 0.1912 0.2301 REMARK 3 12 2.5900 - 2.5200 1.00 2618 130 0.1949 0.2779 REMARK 3 13 2.5200 - 2.4500 1.00 2630 111 0.1991 0.2481 REMARK 3 14 2.4500 - 2.3900 1.00 2624 143 0.2030 0.2595 REMARK 3 15 2.3900 - 2.3400 1.00 2586 142 0.2031 0.2841 REMARK 3 16 2.3400 - 2.2900 1.00 2602 120 0.2061 0.2206 REMARK 3 17 2.2900 - 2.2400 1.00 2611 125 0.1988 0.2441 REMARK 3 18 2.2400 - 2.2000 1.00 2590 146 0.2069 0.2417 REMARK 3 19 2.2000 - 2.1600 1.00 2595 129 0.2067 0.2947 REMARK 3 20 2.1600 - 2.1200 1.00 2608 141 0.2188 0.2828 REMARK 3 21 2.1200 - 2.0900 1.00 2559 134 0.2259 0.2630 REMARK 3 22 2.0900 - 2.0600 1.00 2617 121 0.2387 0.2935 REMARK 3 23 2.0600 - 2.0300 1.00 2572 141 0.2542 0.2762 REMARK 3 24 2.0300 - 2.0000 1.00 2596 129 0.2594 0.3461 REMARK 3 25 2.0000 - 1.9700 1.00 2604 131 0.2711 0.3140 REMARK 3 26 1.9700 - 1.9400 0.99 2551 130 0.2833 0.3057 REMARK 3 27 1.9400 - 1.9200 0.99 2603 132 0.3328 0.3509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.254 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6938 REMARK 3 ANGLE : 1.146 9455 REMARK 3 CHIRALITY : 0.065 1080 REMARK 3 PLANARITY : 0.007 1192 REMARK 3 DIHEDRAL : 6.548 5615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'C' AND (RESID 7 THROUGH 16 OR REMARK 3 RESID 18 THROUGH 19 OR RESID 21 THROUGH REMARK 3 50 OR RESID 52 THROUGH 124 OR RESID 126 REMARK 3 THROUGH 136 OR RESID 138 THROUGH 148 OR REMARK 3 RESID 150 THROUGH 187 OR RESID 189 REMARK 3 THROUGH 204 OR RESID 206 THROUGH 223 OR REMARK 3 RESID 302)) REMARK 3 SELECTION : (CHAIN 'H' AND (RESID 7 THROUGH 16 OR REMARK 3 RESID 18 THROUGH 19 OR RESID 21 THROUGH REMARK 3 50 OR RESID 52 THROUGH 124 OR RESID 126 REMARK 3 THROUGH 136 OR RESID 138 THROUGH 148 OR REMARK 3 RESID 150 THROUGH 187 OR RESID 189 REMARK 3 THROUGH 204 OR RESID 206 THROUGH 223 OR REMARK 3 RESID 303)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'D' AND (RESID 6 THROUGH 92 OR REMARK 3 RESID 94 THROUGH 138 OR RESID 140 THROUGH REMARK 3 198 OR RESID 200 THROUGH 216)) REMARK 3 SELECTION : (CHAIN 'L' AND (RESID 6 THROUGH 92 OR REMARK 3 RESID 94 THROUGH 138 OR RESID 140 THROUGH REMARK 3 198 OR RESID 200 THROUGH 216)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'G' REMARK 3 SELECTION : CHAIN 'I' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292127021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 64.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80430 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UG7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KSCN, PEG MME 2000, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.84400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.12550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.84400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 65.12550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H 1 REMARK 465 GLY H 2 REMARK 465 VAL H 3 REMARK 465 HIS H 4 REMARK 465 SER H 5 REMARK 465 GLN H 6 REMARK 465 ASP H 226 REMARK 465 LYS H 227 REMARK 465 THR L 1 REMARK 465 GLY L 2 REMARK 465 VAL L 3 REMARK 465 HIS L 4 REMARK 465 SER L 5 REMARK 465 CYS L 219 REMARK 465 THR C 1 REMARK 465 GLY C 2 REMARK 465 VAL C 3 REMARK 465 HIS C 4 REMARK 465 SER C 5 REMARK 465 SER C 224 REMARK 465 CYS C 225 REMARK 465 ASP C 226 REMARK 465 LYS C 227 REMARK 465 THR D 1 REMARK 465 GLY D 2 REMARK 465 VAL D 3 REMARK 465 HIS D 4 REMARK 465 SER D 5 REMARK 465 GLY D 217 REMARK 465 GLU D 218 REMARK 465 CYS D 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 BGC G 1 O HOH L 404 2.04 REMARK 500 NH2 ARG L 147 O HOH L 401 2.06 REMARK 500 O HOH C 468 O HOH C 479 2.08 REMARK 500 O4 BGC I 1 O5 GAL I 2 2.11 REMARK 500 O HOH L 467 O HOH D 432 2.13 REMARK 500 O4 BGC G 1 C2 GAL G 2 2.15 REMARK 500 O HOH H 417 O HOH L 417 2.15 REMARK 500 O3 GAL G 2 O6 SIA G 3 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU L 88 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 GLU D 86 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 20 -7.73 71.63 REMARK 500 SER H 20 -9.66 72.53 REMARK 500 HIS L 35 -118.29 56.62 REMARK 500 ALA L 56 -39.81 70.15 REMARK 500 ALA L 73 -96.10 61.24 REMARK 500 ALA L 89 172.51 177.40 REMARK 500 SER C 20 -9.83 69.74 REMARK 500 GLN C 21 -159.43 -90.36 REMARK 500 ASN C 88 -169.86 -120.49 REMARK 500 HIS D 35 -118.85 56.23 REMARK 500 ALA D 56 -39.23 70.72 REMARK 500 ALA D 73 -97.51 60.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE REMARK 630 MOLECULE NAME: (2~{S})-2-ACETAMIDO-6-(2-SULFANYLETHANIMIDOYLAMINO) REMARK 630 HEXANAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 SL9 L 302 REMARK 630 SL9 D 301 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: NULL DBREF 8BSO H 1 227 PDB 8BSO 8BSO 1 227 DBREF 8BSO L 1 219 PDB 8BSO 8BSO 1 219 DBREF 8BSO C 1 227 PDB 8BSO 8BSO 1 227 DBREF 8BSO D 1 219 PDB 8BSO 8BSO 1 219 SEQRES 1 H 227 THR GLY VAL HIS SER GLN VAL GLN LEU LYS GLN SER GLY SEQRES 2 H 227 PRO GLY LEU VAL ALA PRO SER GLN SER LEU SER ILE THR SEQRES 3 H 227 CYS THR VAL SER GLY PHE SER LEU THR SER PHE GLY VAL SEQRES 4 H 227 HIS TRP VAL ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP SEQRES 5 H 227 LEU GLY VAL ILE TRP ALA VAL GLY SER THR ASN TYR ASN SEQRES 6 H 227 SER ALA LEU MET SER ARG LEU SER ILE SER LYS ASP ASN SEQRES 7 H 227 SER LYS SER GLN VAL PHE LEU LYS MET ASN SER LEU GLN SEQRES 8 H 227 ILE ASP ASP THR ALA MET TYR TYR CYS ALA THR TYR GLY SEQRES 9 H 227 ASN TYR GLY GLY PHE ALA TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 227 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 227 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 227 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 227 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 227 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 227 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 227 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 227 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 227 PRO LYS SER CYS ASP LYS SEQRES 1 L 219 THR GLY VAL HIS SER ASP ILE GLN MET THR GLN SER PRO SEQRES 2 L 219 LYS SER MET SER MET SER VAL GLY GLU ARG VAL THR LEU SEQRES 3 L 219 SER CYS LYS ALA SER GLU ASN VAL HIS THR TYR VAL SER SEQRES 4 L 219 TRP TYR GLN GLN LYS PRO GLU GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR GLY ALA SER ASN ARG TYR THR GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE THR GLY SER GLY SER ALA THR ASP PHE THR LEU SEQRES 7 L 219 THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA ASP TYR SEQRES 8 L 219 HIS CYS GLY GLN THR TYR THR TYR PRO PHE THR PHE GLY SEQRES 9 L 219 SER GLY THR LYS LEU GLU LEU LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 227 THR GLY VAL HIS SER GLN VAL GLN LEU LYS GLN SER GLY SEQRES 2 C 227 PRO GLY LEU VAL ALA PRO SER GLN SER LEU SER ILE THR SEQRES 3 C 227 CYS THR VAL SER GLY PHE SER LEU THR SER PHE GLY VAL SEQRES 4 C 227 HIS TRP VAL ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP SEQRES 5 C 227 LEU GLY VAL ILE TRP ALA VAL GLY SER THR ASN TYR ASN SEQRES 6 C 227 SER ALA LEU MET SER ARG LEU SER ILE SER LYS ASP ASN SEQRES 7 C 227 SER LYS SER GLN VAL PHE LEU LYS MET ASN SER LEU GLN SEQRES 8 C 227 ILE ASP ASP THR ALA MET TYR TYR CYS ALA THR TYR GLY SEQRES 9 C 227 ASN TYR GLY GLY PHE ALA TYR TRP GLY GLN GLY THR LEU SEQRES 10 C 227 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 C 227 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 C 227 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 C 227 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 C 227 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 C 227 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 C 227 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 C 227 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 C 227 PRO LYS SER CYS ASP LYS SEQRES 1 D 219 THR GLY VAL HIS SER ASP ILE GLN MET THR GLN SER PRO SEQRES 2 D 219 LYS SER MET SER MET SER VAL GLY GLU ARG VAL THR LEU SEQRES 3 D 219 SER CYS LYS ALA SER GLU ASN VAL HIS THR TYR VAL SER SEQRES 4 D 219 TRP TYR GLN GLN LYS PRO GLU GLN SER PRO LYS LEU LEU SEQRES 5 D 219 ILE TYR GLY ALA SER ASN ARG TYR THR GLY VAL PRO ASP SEQRES 6 D 219 ARG PHE THR GLY SER GLY SER ALA THR ASP PHE THR LEU SEQRES 7 D 219 THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA ASP TYR SEQRES 8 D 219 HIS CYS GLY GLN THR TYR THR TYR PRO PHE THR PHE GLY SEQRES 9 D 219 SER GLY THR LYS LEU GLU LEU LYS ARG THR VAL ALA ALA SEQRES 10 D 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 D 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 D 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 D 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 D 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 D 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 D 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 D 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET BGC G 1 11 HET GAL G 2 11 HET SIA G 3 20 HET BGC I 1 11 HET GAL I 2 11 HET SIA I 3 20 HET GOL H 301 6 HET GOL H 302 6 HET GOL L 301 6 HET SL9 L 302 17 HET GOL C 301 6 HET SL9 D 301 17 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM GOL GLYCEROL HETNAM SL9 (2~{S})-2-ACETAMIDO-6-(2-SULFANYLETHANIMIDOYLAMINO) HETNAM 2 SL9 HEXANAMIDE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 BGC 2(C6 H12 O6) FORMUL 5 GAL 2(C6 H12 O6) FORMUL 5 SIA 2(C11 H19 N O9) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 10 SL9 2(C10 H20 N4 O2 S) FORMUL 13 HOH *376(H2 O) HELIX 1 AA1 LEU H 68 SER H 70 5 3 HELIX 2 AA2 GLN H 91 THR H 95 5 5 HELIX 3 AA3 SER H 136 LYS H 138 5 3 HELIX 4 AA4 SER H 165 ALA H 167 5 3 HELIX 5 AA5 SER H 196 LEU H 198 5 3 HELIX 6 AA6 LYS H 210 ASN H 213 5 4 HELIX 7 AA7 GLN L 84 LEU L 88 5 5 HELIX 8 AA8 SER L 126 SER L 132 1 7 HELIX 9 AA9 LYS L 188 GLU L 192 1 5 HELIX 10 AB1 LEU C 68 SER C 70 5 3 HELIX 11 AB2 GLN C 91 THR C 95 5 5 HELIX 12 AB3 SER C 136 LYS C 138 5 3 HELIX 13 AB4 SER C 165 ALA C 167 5 3 HELIX 14 AB5 SER C 196 LEU C 198 5 3 HELIX 15 AB6 LYS C 210 ASN C 213 5 4 HELIX 16 AB7 GLN D 84 LEU D 88 5 5 HELIX 17 AB8 SER D 126 SER D 132 1 7 HELIX 18 AB9 LYS D 188 LYS D 193 1 6 SHEET 1 AA1 4 GLN H 8 GLN H 11 0 SHEET 2 AA1 4 LEU H 23 SER H 30 -1 O THR H 28 N LYS H 10 SHEET 3 AA1 4 GLN H 82 MET H 87 -1 O MET H 87 N LEU H 23 SHEET 4 AA1 4 LEU H 72 ASP H 77 -1 N SER H 75 O PHE H 84 SHEET 1 AA2 6 GLY H 15 VAL H 17 0 SHEET 2 AA2 6 THR H 116 VAL H 120 1 O THR H 119 N VAL H 17 SHEET 3 AA2 6 ALA H 96 THR H 102 -1 N ALA H 96 O VAL H 118 SHEET 4 AA2 6 VAL H 39 GLN H 44 -1 N HIS H 40 O ALA H 101 SHEET 5 AA2 6 GLU H 51 ILE H 56 -1 O LEU H 53 N TRP H 41 SHEET 6 AA2 6 THR H 62 TYR H 64 -1 O ASN H 63 N VAL H 55 SHEET 1 AA3 4 GLY H 15 VAL H 17 0 SHEET 2 AA3 4 THR H 116 VAL H 120 1 O THR H 119 N VAL H 17 SHEET 3 AA3 4 ALA H 96 THR H 102 -1 N ALA H 96 O VAL H 118 SHEET 4 AA3 4 TYR H 111 TRP H 112 -1 O TYR H 111 N THR H 102 SHEET 1 AA4 4 SER H 129 LEU H 133 0 SHEET 2 AA4 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 AA4 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 151 SHEET 4 AA4 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 AA5 4 THR H 140 SER H 141 0 SHEET 2 AA5 4 THR H 144 TYR H 154 -1 O THR H 144 N SER H 141 SHEET 3 AA5 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 151 SHEET 4 AA5 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 AA6 3 THR H 160 TRP H 163 0 SHEET 2 AA6 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 AA6 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SHEET 1 AA7 4 MET L 9 SER L 12 0 SHEET 2 AA7 4 VAL L 24 ALA L 30 -1 O LYS L 29 N THR L 10 SHEET 3 AA7 4 ASP L 75 ILE L 80 -1 O LEU L 78 N LEU L 26 SHEET 4 AA7 4 PHE L 67 SER L 72 -1 N SER L 70 O THR L 77 SHEET 1 AA8 6 SER L 15 SER L 19 0 SHEET 2 AA8 6 THR L 107 LYS L 112 1 O GLU L 110 N MET L 16 SHEET 3 AA8 6 ALA L 89 GLN L 95 -1 N ALA L 89 O LEU L 109 SHEET 4 AA8 6 VAL L 38 GLN L 43 -1 N GLN L 43 O ASP L 90 SHEET 5 AA8 6 LYS L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AA8 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA9 4 SER L 15 SER L 19 0 SHEET 2 AA9 4 THR L 107 LYS L 112 1 O GLU L 110 N MET L 16 SHEET 3 AA9 4 ALA L 89 GLN L 95 -1 N ALA L 89 O LEU L 109 SHEET 4 AA9 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AB1 4 SER L 119 PHE L 123 0 SHEET 2 AB1 4 THR L 134 PHE L 144 -1 O LEU L 140 N PHE L 121 SHEET 3 AB1 4 TYR L 178 SER L 187 -1 O LEU L 180 N LEU L 141 SHEET 4 AB1 4 SER L 164 VAL L 168 -1 N GLN L 165 O THR L 183 SHEET 1 AB2 4 ALA L 158 LEU L 159 0 SHEET 2 AB2 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AB2 4 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 4 AB2 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SHEET 1 AB3 4 GLN C 8 GLN C 11 0 SHEET 2 AB3 4 LEU C 23 SER C 30 -1 O THR C 28 N LYS C 10 SHEET 3 AB3 4 GLN C 82 MET C 87 -1 O VAL C 83 N CYS C 27 SHEET 4 AB3 4 LEU C 72 ASP C 77 -1 N SER C 75 O PHE C 84 SHEET 1 AB4 6 GLY C 15 VAL C 17 0 SHEET 2 AB4 6 THR C 116 VAL C 120 1 O THR C 119 N GLY C 15 SHEET 3 AB4 6 ALA C 96 THR C 102 -1 N TYR C 98 O THR C 116 SHEET 4 AB4 6 VAL C 39 GLN C 44 -1 N VAL C 42 O TYR C 99 SHEET 5 AB4 6 GLU C 51 ILE C 56 -1 O LEU C 53 N TRP C 41 SHEET 6 AB4 6 THR C 62 TYR C 64 -1 O ASN C 63 N VAL C 55 SHEET 1 AB5 4 GLY C 15 VAL C 17 0 SHEET 2 AB5 4 THR C 116 VAL C 120 1 O THR C 119 N GLY C 15 SHEET 3 AB5 4 ALA C 96 THR C 102 -1 N TYR C 98 O THR C 116 SHEET 4 AB5 4 TYR C 111 TRP C 112 -1 O TYR C 111 N THR C 102 SHEET 1 AB6 4 SER C 129 LEU C 133 0 SHEET 2 AB6 4 THR C 144 TYR C 154 -1 O LEU C 150 N PHE C 131 SHEET 3 AB6 4 TYR C 185 PRO C 194 -1 O LEU C 187 N VAL C 151 SHEET 4 AB6 4 VAL C 172 THR C 174 -1 N HIS C 173 O VAL C 190 SHEET 1 AB7 4 THR C 140 SER C 141 0 SHEET 2 AB7 4 THR C 144 TYR C 154 -1 O THR C 144 N SER C 141 SHEET 3 AB7 4 TYR C 185 PRO C 194 -1 O LEU C 187 N VAL C 151 SHEET 4 AB7 4 VAL C 178 LEU C 179 -1 N VAL C 178 O SER C 186 SHEET 1 AB8 3 THR C 160 TRP C 163 0 SHEET 2 AB8 3 ILE C 204 HIS C 209 -1 O ASN C 206 N SER C 162 SHEET 3 AB8 3 THR C 214 LYS C 219 -1 O VAL C 216 N VAL C 207 SHEET 1 AB9 4 MET D 9 SER D 12 0 SHEET 2 AB9 4 VAL D 24 ALA D 30 -1 O LYS D 29 N THR D 10 SHEET 3 AB9 4 ASP D 75 ILE D 80 -1 O LEU D 78 N LEU D 26 SHEET 4 AB9 4 PHE D 67 SER D 72 -1 N THR D 68 O THR D 79 SHEET 1 AC1 6 SER D 15 SER D 19 0 SHEET 2 AC1 6 THR D 107 LYS D 112 1 O LYS D 112 N MET D 18 SHEET 3 AC1 6 ALA D 89 GLN D 95 -1 N ALA D 89 O LEU D 109 SHEET 4 AC1 6 VAL D 38 GLN D 43 -1 N GLN D 43 O ASP D 90 SHEET 5 AC1 6 LYS D 50 TYR D 54 -1 O LYS D 50 N GLN D 42 SHEET 6 AC1 6 ASN D 58 ARG D 59 -1 O ASN D 58 N TYR D 54 SHEET 1 AC2 4 SER D 15 SER D 19 0 SHEET 2 AC2 4 THR D 107 LYS D 112 1 O LYS D 112 N MET D 18 SHEET 3 AC2 4 ALA D 89 GLN D 95 -1 N ALA D 89 O LEU D 109 SHEET 4 AC2 4 THR D 102 PHE D 103 -1 O THR D 102 N GLN D 95 SHEET 1 AC3 4 SER D 119 PHE D 123 0 SHEET 2 AC3 4 THR D 134 PHE D 144 -1 O LEU D 140 N PHE D 121 SHEET 3 AC3 4 TYR D 178 SER D 187 -1 O LEU D 180 N LEU D 141 SHEET 4 AC3 4 SER D 164 VAL D 168 -1 N GLN D 165 O THR D 183 SHEET 1 AC4 4 ALA D 158 LEU D 159 0 SHEET 2 AC4 4 LYS D 150 VAL D 155 -1 N VAL D 155 O ALA D 158 SHEET 3 AC4 4 VAL D 196 THR D 202 -1 O THR D 202 N LYS D 150 SHEET 4 AC4 4 VAL D 210 ASN D 215 -1 O LYS D 212 N CYS D 199 SSBOND 1 CYS H 27 CYS H 100 1555 1555 2.12 SSBOND 2 CYS H 149 CYS H 205 1555 1555 2.03 SSBOND 3 CYS L 28 CYS L 93 1555 1555 2.07 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.03 SSBOND 5 CYS C 27 CYS C 100 1555 1555 2.11 SSBOND 6 CYS C 149 CYS C 205 1555 1555 2.04 SSBOND 7 CYS D 28 CYS D 93 1555 1555 2.08 SSBOND 8 CYS D 139 CYS D 199 1555 1555 2.04 LINK S1 SL9 L 302 C1 BGC G 1 1555 1555 1.80 LINK S1 SL9 D 301 C1 BGC I 1 1555 1555 1.76 LINK O4 BGC G 1 C1 GAL G 2 1555 1555 1.37 LINK O3 GAL G 2 C2 SIA G 3 1555 1555 1.38 LINK O4 BGC I 1 C1 GAL I 2 1555 1555 1.37 LINK O3 GAL I 2 C2 SIA I 3 1555 1555 1.38 CISPEP 1 PHE H 155 PRO H 156 0 -2.38 CISPEP 2 GLU H 157 PRO H 158 0 0.93 CISPEP 3 SER L 12 PRO L 13 0 -5.22 CISPEP 4 TYR L 99 PRO L 100 0 -6.29 CISPEP 5 TYR L 145 PRO L 146 0 3.49 CISPEP 6 PHE C 155 PRO C 156 0 -5.94 CISPEP 7 GLU C 157 PRO C 158 0 1.39 CISPEP 8 SER D 12 PRO D 13 0 -6.41 CISPEP 9 TYR D 99 PRO D 100 0 -5.74 CISPEP 10 TYR D 145 PRO D 146 0 3.28 CRYST1 117.688 130.251 77.693 90.00 123.77 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008497 0.000000 0.005682 0.00000 SCALE2 0.000000 0.007677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015484 0.00000