HEADER OXIDOREDUCTASE 26-NOV-22 8BSY TITLE IPNS H270D VARIANT IN COMPLEX WITH FE AND ACV AFTER 30S O2 EXPOSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLD_IPNS_H270D KEYWDS ISOPENICILLIN N SYNTHASE, ANTIOBIOTIC BIOSYNTHESIS, PENICILLIN, BETA KEYWDS 2 LACTAM, OXYGENASE, ANAEROBIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 13-DEC-23 8BSY 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL IPNS H270D VARIANT IN COMPLEX WITH FE AND ACV AFTER 30S O2 JRNL TITL 2 EXPOSURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8600 - 3.9200 1.00 2915 149 0.1521 0.1534 REMARK 3 2 3.9200 - 3.1100 1.00 2800 133 0.1467 0.1696 REMARK 3 3 3.1100 - 2.7200 1.00 2746 132 0.1614 0.1990 REMARK 3 4 2.7200 - 2.4700 1.00 2714 145 0.1608 0.1844 REMARK 3 5 2.4700 - 2.2900 1.00 2709 144 0.1567 0.1855 REMARK 3 6 2.2900 - 2.1600 1.00 2721 133 0.1507 0.1816 REMARK 3 7 2.1600 - 2.0500 1.00 2699 155 0.1571 0.1688 REMARK 3 8 2.0500 - 1.9600 1.00 2644 145 0.1534 0.2113 REMARK 3 9 1.9600 - 1.8900 1.00 2676 149 0.1647 0.2251 REMARK 3 10 1.8900 - 1.8200 1.00 2669 164 0.1642 0.1803 REMARK 3 11 1.8200 - 1.7600 1.00 2686 131 0.1719 0.2296 REMARK 3 12 1.7600 - 1.7100 1.00 2678 131 0.1735 0.2163 REMARK 3 13 1.7100 - 1.6700 1.00 2658 142 0.1870 0.2234 REMARK 3 14 1.6700 - 1.6300 1.00 2692 137 0.1861 0.2263 REMARK 3 15 1.6300 - 1.5900 1.00 2621 132 0.1959 0.2410 REMARK 3 16 1.5900 - 1.5600 1.00 2689 138 0.2035 0.2295 REMARK 3 17 1.5600 - 1.5300 1.00 2642 128 0.2128 0.2825 REMARK 3 18 1.5300 - 1.5000 1.00 2696 129 0.2212 0.2460 REMARK 3 19 1.5000 - 1.4700 1.00 2617 169 0.2398 0.2616 REMARK 3 20 1.4700 - 1.4500 1.00 2637 144 0.2571 0.2926 REMARK 3 21 1.4500 - 1.4200 1.00 2639 132 0.2704 0.3218 REMARK 3 22 1.4200 - 1.4000 1.00 2692 139 0.2858 0.3090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2808 REMARK 3 ANGLE : 0.969 3842 REMARK 3 CHIRALITY : 0.089 401 REMARK 3 PLANARITY : 0.008 515 REMARK 3 DIHEDRAL : 12.355 1022 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9185 -4.0586 14.9614 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.1136 REMARK 3 T33: 0.0884 T12: -0.0100 REMARK 3 T13: 0.0104 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.5243 L22: 1.9081 REMARK 3 L33: 3.3177 L12: 0.3624 REMARK 3 L13: 0.4809 L23: 1.1141 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.0935 S13: -0.0695 REMARK 3 S21: 0.1012 S22: -0.0693 S23: 0.0114 REMARK 3 S31: 0.1415 S32: -0.1938 S33: 0.0193 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8021 1.2599 -2.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.0894 T22: 0.1080 REMARK 3 T33: 0.1308 T12: -0.0197 REMARK 3 T13: -0.0126 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.5250 L22: 0.8918 REMARK 3 L33: 3.9721 L12: -0.2589 REMARK 3 L13: -0.2100 L23: -0.2469 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: -0.0107 S13: -0.0272 REMARK 3 S21: -0.0637 S22: 0.0326 S23: 0.1134 REMARK 3 S31: -0.1082 S32: -0.3829 S33: -0.1290 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8855 6.7153 -23.9296 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.0837 REMARK 3 T33: 0.0515 T12: -0.0011 REMARK 3 T13: -0.0026 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 6.0738 L22: 5.4458 REMARK 3 L33: 5.3263 L12: 1.0928 REMARK 3 L13: -2.3230 L23: -0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.0980 S13: 0.0725 REMARK 3 S21: -0.1043 S22: -0.0859 S23: 0.0204 REMARK 3 S31: -0.3174 S32: -0.0513 S33: 0.0153 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2906 10.3077 -13.9079 REMARK 3 T TENSOR REMARK 3 T11: 0.1097 T22: 0.0905 REMARK 3 T33: 0.0913 T12: -0.0053 REMARK 3 T13: 0.0128 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.9003 L22: 1.1095 REMARK 3 L33: 1.8043 L12: 0.4993 REMARK 3 L13: 0.3086 L23: 0.2555 REMARK 3 S TENSOR REMARK 3 S11: -0.0507 S12: 0.1095 S13: 0.0907 REMARK 3 S21: -0.0889 S22: 0.0984 S23: -0.0622 REMARK 3 S31: -0.2763 S32: 0.0783 S33: -0.0376 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5612 9.5753 5.8531 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.0731 REMARK 3 T33: 0.0947 T12: -0.0142 REMARK 3 T13: 0.0156 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.6631 L22: 1.0404 REMARK 3 L33: 3.5227 L12: -0.4892 REMARK 3 L13: 0.5971 L23: -0.8301 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0371 S13: 0.0473 REMARK 3 S21: 0.0222 S22: 0.0186 S23: -0.0035 REMARK 3 S31: -0.2472 S32: 0.0406 S33: 0.0029 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6894 -8.7148 -4.0098 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.0774 REMARK 3 T33: 0.0930 T12: 0.0081 REMARK 3 T13: 0.0091 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.9381 L22: 0.7935 REMARK 3 L33: 1.7831 L12: 0.0411 REMARK 3 L13: 0.4728 L23: 0.1636 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.0029 S13: -0.1042 REMARK 3 S21: -0.0110 S22: 0.0021 S23: 0.0188 REMARK 3 S31: 0.1906 S32: 0.0416 S33: -0.0373 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8685 1.6153 10.4374 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.4015 REMARK 3 T33: 0.1785 T12: -0.0023 REMARK 3 T13: -0.0137 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 1.4418 L22: 2.3001 REMARK 3 L33: 2.9038 L12: -0.3324 REMARK 3 L13: 0.5907 L23: -0.8826 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -0.3711 S13: -0.0690 REMARK 3 S21: 0.2589 S22: -0.1807 S23: -0.2665 REMARK 3 S31: 0.0910 S32: 0.7932 S33: 0.1449 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7077 -1.3164 -8.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.2055 REMARK 3 T33: 0.1710 T12: 0.0240 REMARK 3 T13: 0.0183 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.9313 L22: 4.0780 REMARK 3 L33: 5.9346 L12: 1.1914 REMARK 3 L13: 1.3330 L23: 3.5583 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: 0.0743 S13: -0.1206 REMARK 3 S21: -0.2115 S22: 0.2194 S23: -0.1310 REMARK 3 S31: 0.0898 S32: 0.4664 S33: -0.1296 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8BSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1292126415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.17800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 2.06600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZAE REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 3 UM X 3 UM X 160 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.3, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.67900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.62200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.21600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.62200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.67900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.21600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 ASN A 303 ND2 REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 ASP A 307 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 652 O HOH A 748 2.08 REMARK 500 OE1 GLN A 318 O HOH A 501 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -111.08 -102.98 REMARK 500 HIS A 82 59.98 -109.54 REMARK 500 LYS A 97 -41.53 -133.39 REMARK 500 THR A 123 -7.28 77.24 REMARK 500 ASN A 230 -28.90 -154.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 104.3 REMARK 620 3 HOH A 804 O 128.6 101.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 85.9 REMARK 620 3 ASP A 270 OD1 87.9 169.5 REMARK 620 4 HOH A 592 O 91.1 88.3 83.3 REMARK 620 5 HOH A 752 O 175.8 94.4 91.2 84.7 REMARK 620 6 HOH A 804 O 99.8 90.6 98.9 169.0 84.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB REMARK 900 RELATED ID: 7ZOE RELATED DB: PDB REMARK 900 RELATED ID: 8A4G RELATED DB: PDB REMARK 900 RELATED ID: 8ALI RELATED DB: PDB REMARK 900 RELATED ID: 8ALJ RELATED DB: PDB DBREF 8BSY A 1 331 UNP P05326 IPNA_EMENI 1 331 SEQADV 8BSY ASP A 270 UNP P05326 HIS 270 ENGINEERED MUTATION SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE ASP ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET ACV A 403 48 HET FE A 404 2 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM FE FE (III) ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 FE FE 3+ FORMUL 6 HOH *450(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 6 SER A 5 LYS A 6 0 SHEET 2 AA1 6 GLY A 238 ASP A 241 1 O ASP A 241 N SER A 5 SHEET 3 AA1 6 LEU A 231 THR A 235 -1 N VAL A 233 O GLN A 240 SHEET 4 AA1 6 ILE A 269 LYS A 273 -1 O ILE A 269 N GLU A 234 SHEET 5 AA1 6 LYS A 208 GLU A 215 -1 N SER A 210 O VAL A 272 SHEET 6 AA1 6 LYS A 201 THR A 202 -1 N LYS A 201 O LEU A 209 SHEET 1 AA2 8 LYS A 11 ASP A 13 0 SHEET 2 AA2 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA2 8 TYR A 249 CYS A 253 -1 O ILE A 251 N PHE A 42 SHEET 4 AA2 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA2 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA2 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA2 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA2 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 LINK NE2 HIS A 214 FE A FE A 404 1555 1555 1.89 LINK NE2 HIS A 214 FE B FE A 404 1555 1555 2.35 LINK OD1 ASP A 216 FE A FE A 404 1555 1555 1.97 LINK OD1 ASP A 216 FE B FE A 404 1555 1555 2.12 LINK OD1 ASP A 270 FE B FE A 404 1555 1555 2.04 LINK FE B FE A 404 O HOH A 592 1555 1555 2.18 LINK FE B FE A 404 O HOH A 752 1555 1555 2.16 LINK FE A FE A 404 O HOH A 804 1555 1555 1.91 LINK FE B FE A 404 O HOH A 804 1555 1555 2.13 CISPEP 1 ASP A 193 PRO A 194 0 -1.02 CRYST1 41.358 74.432 101.244 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009877 0.00000