HEADER DNA BINDING PROTEIN 05-DEC-22 8BVX TITLE STRUCTURE OF THE MOUSE 8-OXOGUANINE DNA GLYCOSYLASE MOGG1 IN COMPLEX TITLE 2 WITH LIGAND TH13264 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-GLYCOSYLASE/DNA LYASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.2.2.-,4.2.99.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: OGG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OGG1, LIGAND, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.SCALETTI,P.STENMARK REVDAT 1 15-MAY-24 8BVX 0 JRNL AUTH E.SCALETTI,P.STENMARK JRNL TITL STRUCTURE OF THE MOUSE 8-OXOGUANINE DNA GLYCOSYLASE MOGG1 IN JRNL TITL 2 COMPLEX WITH LIGAND TH13264 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.953 REMARK 3 FREE R VALUE TEST SET COUNT : 2387 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41100 REMARK 3 B22 (A**2) : 2.22900 REMARK 3 B33 (A**2) : -1.81900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.427 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.264 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7523 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6667 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10242 ; 0.659 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15496 ; 0.238 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 918 ; 5.431 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ; 2.076 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1154 ;11.232 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1103 ; 0.033 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8637 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1576 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1508 ; 0.169 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 39 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3630 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 159 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3696 ; 1.586 ; 7.343 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3696 ; 1.586 ; 7.344 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4606 ; 2.845 ;11.001 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4607 ; 2.844 ;11.002 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3827 ; 1.245 ; 7.305 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3828 ; 1.245 ; 7.306 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5636 ; 2.193 ;10.933 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5637 ; 2.193 ;10.934 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8BVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48282 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 58.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % W/V PEG4000, 20 % GLYCEROL, 0.03 REMARK 280 M ETHYLENE GLYCOL, 0.1 M MOPS/HEPES-NA PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.79450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.97700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.93700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.97700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.79450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.93700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 ASP B 81 REMARK 465 ASP B 82 REMARK 465 SER B 83 REMARK 465 GLN B 84 REMARK 465 VAL B 85 REMARK 465 SER B 86 REMARK 465 THR B 285 REMARK 465 SER B 286 REMARK 465 GLN B 287 REMARK 465 ALA B 288 REMARK 465 LYS B 289 REMARK 465 GLY B 290 REMARK 465 GLN B 325 REMARK 465 ASP C 82 REMARK 465 SER C 83 REMARK 465 GLN C 84 REMARK 465 GLU C 217 REMARK 465 GLU C 218 REMARK 465 GLN C 219 REMARK 465 GLY C 220 REMARK 465 GLY C 221 REMARK 465 ALA C 288 REMARK 465 LYS C 289 REMARK 465 GLN C 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 THR A 285 OG1 CG2 REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 LEU B 22 CG CD1 CD2 REMARK 470 TYR B 74 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 324 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 185 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 197 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 201 CG CD1 CD2 REMARK 470 ARG C 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 206 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 209 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 213 CG CD CE NZ REMARK 470 GLN C 227 CG CD OE1 NE2 REMARK 470 HIS C 270 CG ND1 CD2 CE1 NE2 REMARK 470 GLN C 287 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 -63.74 -94.07 REMARK 500 THR A 69 -157.17 -101.21 REMARK 500 ASP A 81 34.27 -85.14 REMARK 500 ASP A 174 -124.25 55.44 REMARK 500 ALA A 258 -34.60 -132.34 REMARK 500 ASP A 268 -162.72 -119.50 REMARK 500 CYS B 28 111.19 -163.41 REMARK 500 ALA B 40 47.96 -155.38 REMARK 500 GLN B 43 -62.70 -97.49 REMARK 500 ASP B 71 -34.92 -162.71 REMARK 500 ASN B 149 70.51 54.54 REMARK 500 LEU B 170 -71.47 -113.95 REMARK 500 ASP B 174 -107.08 52.72 REMARK 500 ALA B 258 -41.05 -139.88 REMARK 500 TYR B 310 43.04 -108.20 REMARK 500 THR C 69 -158.93 -120.88 REMARK 500 ASP C 117 115.52 -161.11 REMARK 500 SER C 148 105.60 -50.61 REMARK 500 LEU C 170 -60.61 -107.30 REMARK 500 ASP C 174 -110.87 54.57 REMARK 500 GLU C 191 50.25 -110.51 REMARK 500 LYS C 261 79.88 -118.47 REMARK 500 ASP C 268 -161.97 -120.25 REMARK 500 LYS C 284 46.46 -94.94 REMARK 500 SER C 286 104.04 63.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 404 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 276 NE2 REMARK 620 2 HIS A 282 NE2 92.3 REMARK 620 3 HIS B 276 NE2 93.4 86.6 REMARK 620 4 HIS B 282 NE2 172.3 94.3 91.0 REMARK 620 5 HIS C 276 NE2 93.0 173.3 89.0 80.8 REMARK 620 6 HIS C 282 NE2 85.1 87.8 174.1 91.1 96.8 REMARK 620 N 1 2 3 4 5 DBREF 8BVX A 9 325 UNP O08760 OGG1_MOUSE 9 325 DBREF 8BVX B 9 325 UNP O08760 OGG1_MOUSE 9 325 DBREF 8BVX C 9 325 UNP O08760 OGG1_MOUSE 9 325 SEQADV 8BVX GLY A 8 UNP O08760 EXPRESSION TAG SEQADV 8BVX HIS A 10 UNP O08760 SER 10 CONFLICT SEQADV 8BVX GLY B 8 UNP O08760 EXPRESSION TAG SEQADV 8BVX HIS B 10 UNP O08760 SER 10 CONFLICT SEQADV 8BVX GLY C 8 UNP O08760 EXPRESSION TAG SEQADV 8BVX HIS C 10 UNP O08760 SER 10 CONFLICT SEQRES 1 A 318 GLY SER HIS MET ARG HIS ARG THR LEU SER SER SER PRO SEQRES 2 A 318 ALA LEU TRP ALA SER ILE PRO CYS PRO ARG SER GLU LEU SEQRES 3 A 318 ARG LEU ASP LEU VAL LEU ALA SER GLY GLN SER PHE ARG SEQRES 4 A 318 TRP LYS GLU GLN SER PRO ALA HIS TRP SER GLY VAL LEU SEQRES 5 A 318 ALA ASP GLN VAL TRP THR LEU THR GLN THR GLU ASP GLN SEQRES 6 A 318 LEU TYR CYS THR VAL TYR ARG GLY ASP ASP SER GLN VAL SEQRES 7 A 318 SER ARG PRO THR LEU GLU GLU LEU GLU THR LEU HIS LYS SEQRES 8 A 318 TYR PHE GLN LEU ASP VAL SER LEU ALA GLN LEU TYR SER SEQRES 9 A 318 HIS TRP ALA SER VAL ASP SER HIS PHE GLN ARG VAL ALA SEQRES 10 A 318 GLN LYS PHE GLN GLY VAL ARG LEU LEU ARG GLN ASP PRO SEQRES 11 A 318 THR GLU CYS LEU PHE SER PHE ILE CYS SER SER ASN ASN SEQRES 12 A 318 ASN ILE ALA ARG ILE THR GLY MET VAL GLU ARG LEU CYS SEQRES 13 A 318 GLN ALA PHE GLY PRO ARG LEU ILE GLN LEU ASP ASP VAL SEQRES 14 A 318 THR TYR HIS GLY PHE PRO ASN LEU HIS ALA LEU ALA GLY SEQRES 15 A 318 PRO GLU ALA GLU THR HIS LEU ARG LYS LEU GLY LEU GLY SEQRES 16 A 318 TYR ARG ALA ARG TYR VAL ARG ALA SER ALA LYS ALA ILE SEQRES 17 A 318 LEU GLU GLU GLN GLY GLY PRO ALA TRP LEU GLN GLN LEU SEQRES 18 A 318 ARG VAL ALA PRO TYR GLU GLU ALA HIS LYS ALA LEU CYS SEQRES 19 A 318 THR LEU PRO GLY VAL GLY ALA LYS VAL ALA ASP CYS ILE SEQRES 20 A 318 CYS LEU MET ALA LEU ASP LYS PRO GLN ALA VAL PRO VAL SEQRES 21 A 318 ASP VAL HIS VAL TRP GLN ILE ALA HIS ARG ASP TYR GLY SEQRES 22 A 318 TRP HIS PRO LYS THR SER GLN ALA LYS GLY PRO SER PRO SEQRES 23 A 318 LEU ALA ASN LYS GLU LEU GLY ASN PHE PHE ARG ASN LEU SEQRES 24 A 318 TRP GLY PRO TYR ALA GLY TRP ALA GLN ALA VAL LEU PHE SEQRES 25 A 318 SER ALA ASP LEU ARG GLN SEQRES 1 B 318 GLY SER HIS MET ARG HIS ARG THR LEU SER SER SER PRO SEQRES 2 B 318 ALA LEU TRP ALA SER ILE PRO CYS PRO ARG SER GLU LEU SEQRES 3 B 318 ARG LEU ASP LEU VAL LEU ALA SER GLY GLN SER PHE ARG SEQRES 4 B 318 TRP LYS GLU GLN SER PRO ALA HIS TRP SER GLY VAL LEU SEQRES 5 B 318 ALA ASP GLN VAL TRP THR LEU THR GLN THR GLU ASP GLN SEQRES 6 B 318 LEU TYR CYS THR VAL TYR ARG GLY ASP ASP SER GLN VAL SEQRES 7 B 318 SER ARG PRO THR LEU GLU GLU LEU GLU THR LEU HIS LYS SEQRES 8 B 318 TYR PHE GLN LEU ASP VAL SER LEU ALA GLN LEU TYR SER SEQRES 9 B 318 HIS TRP ALA SER VAL ASP SER HIS PHE GLN ARG VAL ALA SEQRES 10 B 318 GLN LYS PHE GLN GLY VAL ARG LEU LEU ARG GLN ASP PRO SEQRES 11 B 318 THR GLU CYS LEU PHE SER PHE ILE CYS SER SER ASN ASN SEQRES 12 B 318 ASN ILE ALA ARG ILE THR GLY MET VAL GLU ARG LEU CYS SEQRES 13 B 318 GLN ALA PHE GLY PRO ARG LEU ILE GLN LEU ASP ASP VAL SEQRES 14 B 318 THR TYR HIS GLY PHE PRO ASN LEU HIS ALA LEU ALA GLY SEQRES 15 B 318 PRO GLU ALA GLU THR HIS LEU ARG LYS LEU GLY LEU GLY SEQRES 16 B 318 TYR ARG ALA ARG TYR VAL ARG ALA SER ALA LYS ALA ILE SEQRES 17 B 318 LEU GLU GLU GLN GLY GLY PRO ALA TRP LEU GLN GLN LEU SEQRES 18 B 318 ARG VAL ALA PRO TYR GLU GLU ALA HIS LYS ALA LEU CYS SEQRES 19 B 318 THR LEU PRO GLY VAL GLY ALA LYS VAL ALA ASP CYS ILE SEQRES 20 B 318 CYS LEU MET ALA LEU ASP LYS PRO GLN ALA VAL PRO VAL SEQRES 21 B 318 ASP VAL HIS VAL TRP GLN ILE ALA HIS ARG ASP TYR GLY SEQRES 22 B 318 TRP HIS PRO LYS THR SER GLN ALA LYS GLY PRO SER PRO SEQRES 23 B 318 LEU ALA ASN LYS GLU LEU GLY ASN PHE PHE ARG ASN LEU SEQRES 24 B 318 TRP GLY PRO TYR ALA GLY TRP ALA GLN ALA VAL LEU PHE SEQRES 25 B 318 SER ALA ASP LEU ARG GLN SEQRES 1 C 318 GLY SER HIS MET ARG HIS ARG THR LEU SER SER SER PRO SEQRES 2 C 318 ALA LEU TRP ALA SER ILE PRO CYS PRO ARG SER GLU LEU SEQRES 3 C 318 ARG LEU ASP LEU VAL LEU ALA SER GLY GLN SER PHE ARG SEQRES 4 C 318 TRP LYS GLU GLN SER PRO ALA HIS TRP SER GLY VAL LEU SEQRES 5 C 318 ALA ASP GLN VAL TRP THR LEU THR GLN THR GLU ASP GLN SEQRES 6 C 318 LEU TYR CYS THR VAL TYR ARG GLY ASP ASP SER GLN VAL SEQRES 7 C 318 SER ARG PRO THR LEU GLU GLU LEU GLU THR LEU HIS LYS SEQRES 8 C 318 TYR PHE GLN LEU ASP VAL SER LEU ALA GLN LEU TYR SER SEQRES 9 C 318 HIS TRP ALA SER VAL ASP SER HIS PHE GLN ARG VAL ALA SEQRES 10 C 318 GLN LYS PHE GLN GLY VAL ARG LEU LEU ARG GLN ASP PRO SEQRES 11 C 318 THR GLU CYS LEU PHE SER PHE ILE CYS SER SER ASN ASN SEQRES 12 C 318 ASN ILE ALA ARG ILE THR GLY MET VAL GLU ARG LEU CYS SEQRES 13 C 318 GLN ALA PHE GLY PRO ARG LEU ILE GLN LEU ASP ASP VAL SEQRES 14 C 318 THR TYR HIS GLY PHE PRO ASN LEU HIS ALA LEU ALA GLY SEQRES 15 C 318 PRO GLU ALA GLU THR HIS LEU ARG LYS LEU GLY LEU GLY SEQRES 16 C 318 TYR ARG ALA ARG TYR VAL ARG ALA SER ALA LYS ALA ILE SEQRES 17 C 318 LEU GLU GLU GLN GLY GLY PRO ALA TRP LEU GLN GLN LEU SEQRES 18 C 318 ARG VAL ALA PRO TYR GLU GLU ALA HIS LYS ALA LEU CYS SEQRES 19 C 318 THR LEU PRO GLY VAL GLY ALA LYS VAL ALA ASP CYS ILE SEQRES 20 C 318 CYS LEU MET ALA LEU ASP LYS PRO GLN ALA VAL PRO VAL SEQRES 21 C 318 ASP VAL HIS VAL TRP GLN ILE ALA HIS ARG ASP TYR GLY SEQRES 22 C 318 TRP HIS PRO LYS THR SER GLN ALA LYS GLY PRO SER PRO SEQRES 23 C 318 LEU ALA ASN LYS GLU LEU GLY ASN PHE PHE ARG ASN LEU SEQRES 24 C 318 TRP GLY PRO TYR ALA GLY TRP ALA GLN ALA VAL LEU PHE SEQRES 25 C 318 SER ALA ASP LEU ARG GLN HET RYF A 401 17 HET EDO A 402 4 HET EDO A 403 4 HET NI A 404 1 HET EDO B 401 4 HETNAM RYF ~{N}-(4-IODOPHENYL)-1~{H}-PYRAZOLO[3,4-D]PYRIMIDIN-4- HETNAM 2 RYF AMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM NI NICKEL (II) ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 RYF C11 H8 I N5 FORMUL 5 EDO 3(C2 H6 O2) FORMUL 7 NI NI 2+ FORMUL 9 HOH *103(H2 O) HELIX 1 AA1 SER A 19 TRP A 23 5 5 HELIX 2 AA2 ARG A 34 VAL A 38 5 5 HELIX 3 AA3 THR A 89 GLN A 101 1 13 HELIX 4 AA4 SER A 105 SER A 115 1 11 HELIX 5 AA5 ASP A 117 PHE A 127 1 11 HELIX 6 AA6 ASP A 136 CYS A 146 1 11 HELIX 7 AA7 ASN A 151 GLY A 167 1 17 HELIX 8 AA8 ASN A 183 ALA A 188 1 6 HELIX 9 AA9 GLU A 191 LEU A 199 1 9 HELIX 10 AB1 TYR A 203 GLU A 218 1 16 HELIX 11 AB2 PRO A 222 ALA A 231 1 10 HELIX 12 AB3 PRO A 232 CYS A 241 1 10 HELIX 13 AB4 GLY A 247 ALA A 258 1 12 HELIX 14 AB5 ASP A 268 GLY A 280 1 13 HELIX 15 AB6 SER A 292 GLY A 308 1 17 HELIX 16 AB7 TYR A 310 ARG A 324 1 15 HELIX 17 AB8 ARG B 34 LEU B 39 1 6 HELIX 18 AB9 THR B 89 PHE B 100 1 12 HELIX 19 AC1 SER B 105 ASP B 117 1 13 HELIX 20 AC2 ASP B 117 GLN B 125 1 9 HELIX 21 AC3 ASP B 136 CYS B 146 1 11 HELIX 22 AC4 ASN B 151 GLY B 167 1 17 HELIX 23 AC5 ASN B 183 ALA B 188 1 6 HELIX 24 AC6 GLU B 191 GLY B 200 1 10 HELIX 25 AC7 TYR B 203 GLU B 218 1 16 HELIX 26 AC8 PRO B 222 ALA B 231 1 10 HELIX 27 AC9 PRO B 232 THR B 242 1 11 HELIX 28 AD1 GLY B 247 ALA B 258 1 12 HELIX 29 AD2 ASP B 268 GLY B 280 1 13 HELIX 30 AD3 SER B 292 GLY B 308 1 17 HELIX 31 AD4 TYR B 310 ARG B 324 1 15 HELIX 32 AD5 SER C 19 TRP C 23 5 5 HELIX 33 AD6 ARG C 34 LEU C 39 1 6 HELIX 34 AD7 THR C 89 GLN C 101 1 13 HELIX 35 AD8 SER C 105 VAL C 116 1 12 HELIX 36 AD9 ASP C 117 GLN C 125 1 9 HELIX 37 AE1 ASP C 136 PHE C 144 1 9 HELIX 38 AE2 ILE C 145 SER C 148 5 4 HELIX 39 AE3 ASN C 151 GLY C 167 1 17 HELIX 40 AE4 ASN C 183 ALA C 188 1 6 HELIX 41 AE5 GLU C 191 GLY C 200 1 10 HELIX 42 AE6 TYR C 203 LEU C 216 1 14 HELIX 43 AE7 ALA C 223 ALA C 231 1 9 HELIX 44 AE8 PRO C 232 THR C 242 1 11 HELIX 45 AE9 GLY C 247 ALA C 258 1 12 HELIX 46 AF1 ASP C 268 GLY C 280 1 13 HELIX 47 AF2 SER C 292 GLY C 308 1 17 HELIX 48 AF3 TYR C 310 ARG C 324 1 15 SHEET 1 AA1 5 ALA A 24 PRO A 27 0 SHEET 2 AA1 5 GLN A 72 TYR A 78 -1 O LEU A 73 N ILE A 26 SHEET 3 AA1 5 VAL A 63 GLN A 68 -1 N VAL A 63 O TYR A 78 SHEET 4 AA1 5 HIS A 54 VAL A 58 -1 N GLY A 57 O TRP A 64 SHEET 5 AA1 5 TRP A 47 SER A 51 -1 N LYS A 48 O SER A 56 SHEET 1 AA2 2 ARG A 169 LEU A 173 0 SHEET 2 AA2 2 VAL A 176 HIS A 179 -1 O TYR A 178 N ILE A 171 SHEET 1 AA3 5 ALA B 24 PRO B 27 0 SHEET 2 AA3 5 GLN B 72 TYR B 78 -1 O CYS B 75 N ALA B 24 SHEET 3 AA3 5 VAL B 63 GLN B 68 -1 N THR B 67 O TYR B 74 SHEET 4 AA3 5 HIS B 54 VAL B 58 -1 N TRP B 55 O LEU B 66 SHEET 5 AA3 5 TRP B 47 SER B 51 -1 N LYS B 48 O SER B 56 SHEET 1 AA4 2 ARG B 169 LEU B 173 0 SHEET 2 AA4 2 VAL B 176 HIS B 179 -1 O VAL B 176 N LEU B 173 SHEET 1 AA5 5 ALA C 24 PRO C 27 0 SHEET 2 AA5 5 GLN C 72 VAL C 77 -1 O LEU C 73 N ILE C 26 SHEET 3 AA5 5 VAL C 63 GLN C 68 -1 N THR C 67 O TYR C 74 SHEET 4 AA5 5 HIS C 54 VAL C 58 -1 N TRP C 55 O LEU C 66 SHEET 5 AA5 5 TRP C 47 SER C 51 -1 N LYS C 48 O SER C 56 SHEET 1 AA6 2 ARG C 169 LEU C 173 0 SHEET 2 AA6 2 VAL C 176 HIS C 179 -1 O TYR C 178 N LEU C 170 LINK NE2 HIS A 276 NI NI A 404 1555 1555 2.22 LINK NE2 HIS A 282 NI NI A 404 1555 1555 2.23 LINK NI NI A 404 NE2 HIS B 276 1555 1555 2.12 LINK NI NI A 404 NE2 HIS B 282 1555 1555 2.26 LINK NI NI A 404 NE2 HIS C 276 1555 1555 2.29 LINK NI NI A 404 NE2 HIS C 282 1555 1555 2.27 CRYST1 81.589 81.874 169.954 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005884 0.00000