HEADER ANTITUMOR PROTEIN 14-DEC-22 8BYU TITLE CRYSTAL STRUCTURE OF HEXABODY-CD38 FAB IN COMPLEX WITH CD38 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ADP-RIBOSYL CYCLASE/CYCLIC ADP-RIBOSE HYDROLASE 1; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: 2'-PHOSPHO-ADP-RIBOSYL CYCLASE,2'-PHOSPHO-ADP-RIBOSYL COMPND 13 CYCLASE/2'-PHOSPHO-CYCLIC-ADP-RIBOSE TRANSFERASE,2'-PHOSPHO-CYCLIC- COMPND 14 ADP-RIBOSE TRANSFERASE,ADP-RIBOSYL CYCLASE 1,ADPRC 1,CYCLIC ADP- COMPND 15 RIBOSE HYDROLASE 1,CADPR HYDROLASE 1,T10; COMPND 16 EC: 3.2.2.6,2.4.99.20; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CD38; SOURCE 16 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS CD38, ANTIBODY, CDC, HEXABODY, ANTI-TUMOR, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.FREIER,S.KRAPP,R.G.HIBBERT REVDAT 2 07-FEB-24 8BYU 1 REMARK REVDAT 1 12-JUL-23 8BYU 0 JRNL AUTH I.H.HIEMSTRA,K.C.M.SANTEGOETS,M.L.JANMAAT,B.E.C.G.DE GOEIJ, JRNL AUTH 2 W.TEN HAGEN,S.VAN DOOREMALEN,P.BOROSS,J.VAN DEN BRAKEL, JRNL AUTH 3 S.BOSGRA,G.ANDRINGA,B.VAN KESSEL-WELMERS,D.VERZIJL, JRNL AUTH 4 R.G.HIBBERT,K.A.FRERICHS,T.MUTIS,N.W.C.J.VAN DE DONK, JRNL AUTH 5 T.AHMADI,D.SATIJN,A.K.SASSER,E.C.W.BREIJ JRNL TITL PRECLINICAL ANTI-TUMOUR ACTIVITY OF HEXABODY-CD38, A JRNL TITL 2 NEXT-GENERATION CD38 ANTIBODY WITH SUPERIOR JRNL TITL 3 COMPLEMENT-DEPENDENT CYTOTOXIC ACTIVITY. JRNL REF EBIOMEDICINE V. 93 04663 2023 JRNL REFN ESSN 2352-3964 JRNL PMID 37379657 JRNL DOI 10.1016/J.EBIOM.2023.104663 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 58751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5320 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.61000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.036 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5772 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5226 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7912 ; 1.343 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12105 ; 1.210 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 763 ; 6.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;34.140 ;22.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 923 ;12.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.036 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 769 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6751 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1321 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2944 ; 1.251 ; 2.815 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2943 ; 1.249 ; 2.814 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3743 ; 2.048 ; 4.215 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3744 ; 2.048 ; 4.217 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2828 ; 1.490 ; 2.985 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2829 ; 1.490 ; 2.986 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4169 ; 2.378 ; 4.400 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6255 ; 4.818 ;33.414 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6096 ; 4.496 ;32.637 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8BYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292126777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.848 REMARK 200 RESOLUTION RANGE LOW (A) : 61.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YH3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M (NH4)2SO4; 0.1 M HEPES: PH:7.0; REMARK 280 20.0 %W/V PEG 4K, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.62000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.15450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.62000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.15450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 223 REMARK 465 CYS H 224 REMARK 465 ASP H 225 REMARK 465 LYS H 226 REMARK 465 THR H 227 REMARK 465 HIS H 228 REMARK 465 THR H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 CYS L 214 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 GLU A 292 REMARK 465 ASP A 293 REMARK 465 SER A 294 REMARK 465 SER A 295 REMARK 465 CYS A 296 REMARK 465 THR A 297 REMARK 465 SER A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS H 23 NZ REMARK 480 THR H 76 OG1 CG2 REMARK 480 ARG H 87 NE CZ NH1 NH2 REMARK 480 LYS H 214 CE NZ REMARK 480 LYS H 222 CE NZ REMARK 480 ARG L 24 CD NE CZ NH1 NH2 REMARK 480 LYS L 42 NZ REMARK 480 LYS L 107 CE NZ REMARK 480 LYS L 126 CE NZ REMARK 480 LYS L 145 CE NZ REMARK 480 LYS L 149 NZ REMARK 480 LYS L 169 CD CE NZ REMARK 480 LYS L 190 CD CE NZ REMARK 480 GLU L 213 CG CD OE1 OE2 REMARK 480 LYS A 57 CD CE NZ REMARK 480 ARG A 58 CZ NH1 NH2 REMARK 480 LYS A 69 NZ REMARK 480 GLU A 72 CD OE1 OE2 REMARK 480 GLU A 104 CD OE1 OE2 REMARK 480 GLN A 107 CD OE1 NE2 REMARK 480 LYS A 111 CD CE NZ REMARK 480 LYS A 167 CD CE NZ REMARK 480 LYS A 190 CE NZ REMARK 480 ARG A 195 CD NE CZ NH1 NH2 REMARK 480 LYS A 218 NZ REMARK 480 GLU A 233 CD OE1 OE2 REMARK 480 ASP A 249 CG OD1 OD2 REMARK 480 LYS A 268 CE NZ REMARK 480 LYS A 283 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG L 30 -124.17 52.99 REMARK 500 ALA L 51 -40.67 72.98 REMARK 500 ALA L 51 -41.09 72.98 REMARK 500 PRO A 98 24.59 -75.97 REMARK 500 PRO A 118 108.50 -50.05 REMARK 500 PRO A 118 108.50 -55.34 REMARK 500 ILE A 128 49.68 -152.28 REMARK 500 GLN A 139 79.85 -107.69 REMARK 500 ASP A 179 -58.19 -120.49 REMARK 500 CYS A 180 147.92 -174.57 REMARK 500 CYS A 180 148.13 -174.57 REMARK 500 ASP A 202 -127.05 56.48 REMARK 500 VAL A 225 -62.10 -120.79 REMARK 500 GLU A 233 -57.32 76.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BYU H 1 235 PDB 8BYU 8BYU 1 235 DBREF 8BYU L 1 214 PDB 8BYU 8BYU 1 214 DBREF 8BYU A 45 300 UNP P28907 CD38_HUMAN 45 300 SEQADV 8BYU HIS A 39 UNP P28907 EXPRESSION TAG SEQADV 8BYU HIS A 40 UNP P28907 EXPRESSION TAG SEQADV 8BYU HIS A 41 UNP P28907 EXPRESSION TAG SEQADV 8BYU HIS A 42 UNP P28907 EXPRESSION TAG SEQADV 8BYU HIS A 43 UNP P28907 EXPRESSION TAG SEQADV 8BYU HIS A 44 UNP P28907 EXPRESSION TAG SEQADV 8BYU THR A 49 UNP P28907 GLN 49 CONFLICT SEQADV 8BYU ASP A 100 UNP P28907 ASN 100 CONFLICT SEQADV 8BYU ALA A 164 UNP P28907 ASN 164 CONFLICT SEQADV 8BYU ASP A 209 UNP P28907 ASN 209 CONFLICT SEQADV 8BYU ASP A 219 UNP P28907 ASN 219 CONFLICT SEQRES 1 H 235 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 235 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA PHE GLY SEQRES 3 H 235 GLY THR PHE SER SER TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 H 235 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ARG ILE ILE SEQRES 5 H 235 ARG PHE LEU GLY ILE ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 235 GLY ARG VAL THR LEU ILE ALA ASP LYS SER THR ASN THR SEQRES 7 H 235 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 235 ALA VAL TYR TYR CYS ALA GLY GLU PRO GLY GLU ARG ASP SEQRES 9 H 235 PRO ASP ALA VAL ASP ILE TRP GLY GLN GLY THR MET VAL SEQRES 10 H 235 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 235 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 235 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 235 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 235 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 235 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 235 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 235 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 235 LYS SER CYS ASP LYS THR HIS THR HIS HIS HIS HIS HIS SEQRES 19 H 235 HIS SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE ARG SER TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLU LYS ALA PRO LYS SER LEU ILE TYR ALA ALA SER SEQRES 5 L 214 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASN SER TYR PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 262 HIS HIS HIS HIS HIS HIS ARG TRP ARG GLN THR TRP SER SEQRES 2 A 262 GLY PRO GLY THR THR LYS ARG PHE PRO GLU THR VAL LEU SEQRES 3 A 262 ALA ARG CYS VAL LYS TYR THR GLU ILE HIS PRO GLU MET SEQRES 4 A 262 ARG HIS VAL ASP CYS GLN SER VAL TRP ASP ALA PHE LYS SEQRES 5 A 262 GLY ALA PHE ILE SER LYS HIS PRO CYS ASP ILE THR GLU SEQRES 6 A 262 GLU ASP TYR GLN PRO LEU MET LYS LEU GLY THR GLN THR SEQRES 7 A 262 VAL PRO CYS ASN LYS ILE LEU LEU TRP SER ARG ILE LYS SEQRES 8 A 262 ASP LEU ALA HIS GLN PHE THR GLN VAL GLN ARG ASP MET SEQRES 9 A 262 PHE THR LEU GLU ASP THR LEU LEU GLY TYR LEU ALA ASP SEQRES 10 A 262 ASP LEU THR TRP CYS GLY GLU PHE ALA THR SER LYS ILE SEQRES 11 A 262 ASN TYR GLN SER CYS PRO ASP TRP ARG LYS ASP CYS SER SEQRES 12 A 262 ASN ASN PRO VAL SER VAL PHE TRP LYS THR VAL SER ARG SEQRES 13 A 262 ARG PHE ALA GLU ALA ALA CYS ASP VAL VAL HIS VAL MET SEQRES 14 A 262 LEU ASP GLY SER ARG SER LYS ILE PHE ASP LYS ASP SER SEQRES 15 A 262 THR PHE GLY SER VAL GLU VAL HIS ASN LEU GLN PRO GLU SEQRES 16 A 262 LYS VAL GLN THR LEU GLU ALA TRP VAL ILE HIS GLY GLY SEQRES 17 A 262 ARG GLU ASP SER ARG ASP LEU CYS GLN ASP PRO THR ILE SEQRES 18 A 262 LYS GLU LEU GLU SER ILE ILE SER LYS ARG ASN ILE GLN SEQRES 19 A 262 PHE SER CYS LYS ASN ILE TYR ARG PRO ASP LYS PHE LEU SEQRES 20 A 262 GLN CYS VAL LYS ASN PRO GLU ASP SER SER CYS THR SER SEQRES 21 A 262 GLU ILE HET SO4 H 301 5 HET GOL H 302 6 HET GOL L 301 6 HET SO4 A 401 10 HET SO4 A 402 5 HET EDO A 403 4 HET EDO A 404 4 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 HOH *619(H2 O) HELIX 1 AA1 GLN H 62 GLN H 65 5 4 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 SER H 135 LYS H 137 5 3 HELIX 4 AA4 SER H 164 ALA H 166 5 3 HELIX 5 AA5 SER H 195 LEU H 197 5 3 HELIX 6 AA6 LYS H 209 ASN H 212 5 4 HELIX 7 AA7 GLN L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 SER L 127 1 7 HELIX 9 AA9 LYS L 183 GLU L 187 1 5 HELIX 10 AB1 ARG A 58 HIS A 74 1 17 HELIX 11 AB2 PRO A 75 ARG A 78 5 4 HELIX 12 AB3 ASP A 81 ILE A 94 1 14 HELIX 13 AB4 THR A 102 ASP A 105 5 4 HELIX 14 AB5 TYR A 106 GLY A 113 1 8 HELIX 15 AB6 ILE A 128 GLN A 139 1 12 HELIX 16 AB7 THR A 144 ASP A 147 5 4 HELIX 17 AB8 THR A 148 ASP A 155 1 8 HELIX 18 AB9 ASN A 183 ALA A 199 1 17 HELIX 19 AC1 SER A 220 VAL A 225 1 6 HELIX 20 AC2 GLU A 226 LEU A 230 5 5 HELIX 21 AC3 ASP A 256 ARG A 269 1 14 HELIX 22 AC4 ARG A 280 VAL A 288 1 9 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 PHE H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA1 4 VAL H 68 ALA H 72 -1 N THR H 69 O GLU H 82 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 115 VAL H 119 1 O THR H 118 N LYS H 12 SHEET 3 AA2 6 ALA H 92 GLU H 99 -1 N ALA H 92 O VAL H 117 SHEET 4 AA2 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLU H 46 ILE H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 ALA H 58 TYR H 60 -1 O ASN H 59 N ARG H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 115 VAL H 119 1 O THR H 118 N LYS H 12 SHEET 3 AA3 4 ALA H 92 GLU H 99 -1 N ALA H 92 O VAL H 117 SHEET 4 AA3 4 ILE H 110 TRP H 111 -1 O ILE H 110 N GLY H 98 SHEET 1 AA4 4 SER H 128 LEU H 132 0 SHEET 2 AA4 4 THR H 143 TYR H 153 -1 O LYS H 151 N SER H 128 SHEET 3 AA4 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AA4 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AA5 4 THR H 139 SER H 140 0 SHEET 2 AA5 4 THR H 143 TYR H 153 -1 O THR H 143 N SER H 140 SHEET 3 AA5 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AA5 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AA6 3 THR H 159 TRP H 162 0 SHEET 2 AA6 3 TYR H 202 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 AA6 3 THR H 213 VAL H 219 -1 O VAL H 219 N TYR H 202 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 ALA L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AB3 2 GLY A 52 PRO A 53 0 SHEET 2 AB3 2 SER A 172 CYS A 173 -1 O CYS A 173 N GLY A 52 SHEET 1 AB4 4 LEU A 123 SER A 126 0 SHEET 2 AB4 4 ASP A 202 ASP A 209 1 O HIS A 205 N LEU A 124 SHEET 3 AB4 4 VAL A 235 ILE A 243 1 O TRP A 241 N VAL A 206 SHEET 4 AB4 4 GLN A 272 ILE A 278 1 O ILE A 278 N VAL A 242 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 148 CYS H 204 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 5 CYS A 67 CYS A 82 1555 1555 2.10 SSBOND 6 CYS A 99 CYS A 180 1555 1555 2.03 SSBOND 7 CYS A 119 CYS A 201 1555 1555 2.06 SSBOND 8 CYS A 160 CYS A 173 1555 1555 2.08 SSBOND 9 CYS A 254 CYS A 275 1555 1555 2.07 CISPEP 1 ASP H 104 PRO H 105 0 1.14 CISPEP 2 PHE H 154 PRO H 155 0 -5.16 CISPEP 3 GLU H 156 PRO H 157 0 -3.96 CISPEP 4 SER L 7 PRO L 8 0 -8.50 CISPEP 5 SER L 7 PRO L 8 0 -8.21 CISPEP 6 TYR L 94 PRO L 95 0 -7.25 CISPEP 7 TYR L 140 PRO L 141 0 1.56 CRYST1 97.240 78.309 98.162 90.00 91.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010284 0.000000 0.000349 0.00000 SCALE2 0.000000 0.012770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010193 0.00000