HEADER TRANSCRIPTION 15-DEC-22 8BZM TITLE FOXK1-ELF1-HETERODIMER BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: G, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHAIN G (A) CONTAINS A SEQUENCE TTACTTCCTGTTTACGT; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FORKHEAD BOX PROTEIN K1; COMPND 8 CHAIN: A, E, I, J; COMPND 9 SYNONYM: MYOCYTE NUCLEAR FACTOR,MNF; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA; COMPND 13 CHAIN: F, C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: ETS-RELATED TRANSCRIPTION FACTOR ELF-1; COMPND 17 CHAIN: B, H; COMPND 18 SYNONYM: E74-LIKE FACTOR 1; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: FOXK1, MNF; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PETG20A-SBP; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: ELF1; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 25 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 26 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 27 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 28 EXPRESSION_SYSTEM_PLASMID: PETG20A-SBP KEYWDS TRANSCRIPTION FACTOR, DNA-BINDING PROTEIN, PROTEIN-DNA COMPLEX, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE REVDAT 1 27-DEC-23 8BZM 0 JRNL AUTH E.MORGUNOVA,A.POPOV,Y.YIN,J.TAIPALE JRNL TITL FOXK1-ELF1_HETERODIMER BOUND TO DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 21947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1218 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1355 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.5030 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4600 REMARK 3 NUCLEIC ACID ATOMS : 1408 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 113.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.17000 REMARK 3 B22 (A**2) : -13.65000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 11.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.475 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.786 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.509 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6469 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5378 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8926 ; 1.693 ; 1.679 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12413 ; 1.115 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 916 ; 7.291 ; 5.441 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;33.890 ;20.069 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 858 ;22.983 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 924 ; 0.161 ; 0.220 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6189 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1492 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2223 ; 8.880 ;12.442 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2222 ; 8.874 ;12.442 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2774 ;13.956 ;18.631 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2775 ;13.954 ;18.632 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4246 ; 7.755 ;11.302 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4247 ; 7.755 ;11.301 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6152 ;12.433 ;16.823 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 18545 ;16.991 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 18545 ;16.991 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 9 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 G D 1399 0.08 0.05 REMARK 3 2 A E 3062 0.10 0.05 REMARK 3 3 A I 2892 0.13 0.05 REMARK 3 4 A J 2978 0.13 0.05 REMARK 3 5 E I 2950 0.12 0.05 REMARK 3 6 E J 3023 0.12 0.05 REMARK 3 7 F C 1398 0.08 0.05 REMARK 3 8 I J 3118 0.09 0.05 REMARK 3 9 B H 2998 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8BZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6199 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23997 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 49.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 1.99900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 3350, PEG 200, MAGNESIUM REMARK 280 CHLORIDE, HEPES, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.93400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, E, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.60123 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -52.93400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.80078 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: J REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 52.93400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 398 REMARK 465 DA F 1 REMARK 465 ARG I 397 REMARK 465 ARG I 398 REMARK 465 ARG J 398 REMARK 465 LYS B 294 REMARK 465 LYS H 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N7 DA F 14 O HOH F 201 1.60 REMARK 500 OP2 DC D 15 O HOH D 101 1.85 REMARK 500 O ASP J 323 O HOH J 401 1.98 REMARK 500 N7 DG F 4 O HOH F 202 2.01 REMARK 500 NE ARG J 354 O HOH J 402 2.03 REMARK 500 OE1 GLN J 325 O HOH J 401 2.03 REMARK 500 OG SER A 377 OP1 DG D 10 2.04 REMARK 500 O5' DA F 8 O HOH F 203 2.15 REMARK 500 OP1 DG G 10 OG SER E 377 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O6 DG D 16 O HOH J 402 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT G 1 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 DT G 2 C3' - O3' - P ANGL. DEV. = -7.6 DEGREES REMARK 500 DT G 6 C3' - O3' - P ANGL. DEV. = -7.4 DEGREES REMARK 500 DC G 7 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT G 9 C3' - O3' - P ANGL. DEV. = -11.3 DEGREES REMARK 500 DG G 10 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG G 10 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA F 2 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA F 2 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 DC F 3 C3' - O3' - P ANGL. DEV. = -9.5 DEGREES REMARK 500 DA F 6 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA F 7 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA F 7 C3' - O3' - P ANGL. DEV. = -7.5 DEGREES REMARK 500 DG F 12 C3' - O3' - P ANGL. DEV. = -8.9 DEGREES REMARK 500 DA F 13 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA F 14 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA F 14 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA F 14 C8 - N9 - C1' ANGL. DEV. = -11.3 DEGREES REMARK 500 DA F 14 C4 - N9 - C1' ANGL. DEV. = 11.1 DEGREES REMARK 500 DC C 3 C3' - O3' - P ANGL. DEV. = -9.5 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA C 7 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA C 7 C3' - O3' - P ANGL. DEV. = -7.5 DEGREES REMARK 500 DA C 8 C3' - O3' - P ANGL. DEV. = -7.4 DEGREES REMARK 500 DG C 12 C3' - O3' - P ANGL. DEV. = -9.3 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT D 1 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 DA D 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 3 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 DT D 5 C4' - C3' - O3' ANGL. DEV. = 14.2 DEGREES REMARK 500 DT D 6 C3' - O3' - P ANGL. DEV. = -7.7 DEGREES REMARK 500 DT D 9 C3' - O3' - P ANGL. DEV. = -11.2 DEGREES REMARK 500 DG D 10 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG D 16 C3' - O3' - P ANGL. DEV. = -8.3 DEGREES REMARK 500 DT D 17 C4 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 372 71.07 -159.87 REMARK 500 GLU E 372 70.52 -163.57 REMARK 500 GLU I 372 70.42 -156.91 REMARK 500 GLU J 372 69.80 -156.73 REMARK 500 THR B 223 11.52 -140.01 REMARK 500 LEU B 240 98.41 -69.51 REMARK 500 VAL B 241 -76.51 -60.08 REMARK 500 ASN B 255 -57.84 73.20 REMARK 500 LYS B 256 81.64 -11.41 REMARK 500 LEU H 240 97.89 -68.40 REMARK 500 VAL H 241 -76.39 -59.87 REMARK 500 ASN H 255 -58.65 73.66 REMARK 500 LYS H 256 81.14 -11.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG E 397 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP H 250 -11.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 8BZM G 1 17 PDB 8BZM 8BZM 1 17 DBREF 8BZM A 304 398 UNP P85037 FOXK1_HUMAN 141 235 DBREF 8BZM E 304 398 UNP P85037 FOXK1_HUMAN 141 235 DBREF 8BZM F 1 18 PDB 8BZM 8BZM 1 18 DBREF 8BZM C 1 18 PDB 8BZM 8BZM 1 18 DBREF 8BZM D 1 17 PDB 8BZM 8BZM 1 17 DBREF 8BZM I 304 398 UNP P85037 FOXK1_HUMAN 141 235 DBREF 8BZM J 304 398 UNP P85037 FOXK1_HUMAN 141 235 DBREF 8BZM B 206 294 UNP P32519 ELF1_HUMAN 206 294 DBREF 8BZM H 206 294 UNP P32519 ELF1_HUMAN 206 294 SEQRES 1 G 17 DT DT DA DC DT DT DC DC DT DG DT DT DT SEQRES 2 G 17 DA DC DG DT SEQRES 1 A 95 SER LYS PRO PRO PHE SER TYR ALA GLN LEU ILE VAL GLN SEQRES 2 A 95 ALA ILE SER SER ALA GLN ASP ARG GLN LEU THR LEU SER SEQRES 3 A 95 GLY ILE TYR ALA HIS ILE THR LYS HIS TYR PRO TYR TYR SEQRES 4 A 95 ARG THR ALA ASP LYS GLY TRP GLN ASN SER ILE ARG HIS SEQRES 5 A 95 ASN LEU SER LEU ASN ARG TYR PHE ILE LYS VAL PRO ARG SEQRES 6 A 95 SER GLN GLU GLU PRO GLY LYS GLY SER PHE TRP ARG ILE SEQRES 7 A 95 ASP PRO ALA SER GLU ALA LYS LEU VAL GLU GLN ALA PHE SEQRES 8 A 95 ARG LYS ARG ARG SEQRES 1 E 95 SER LYS PRO PRO PHE SER TYR ALA GLN LEU ILE VAL GLN SEQRES 2 E 95 ALA ILE SER SER ALA GLN ASP ARG GLN LEU THR LEU SER SEQRES 3 E 95 GLY ILE TYR ALA HIS ILE THR LYS HIS TYR PRO TYR TYR SEQRES 4 E 95 ARG THR ALA ASP LYS GLY TRP GLN ASN SER ILE ARG HIS SEQRES 5 E 95 ASN LEU SER LEU ASN ARG TYR PHE ILE LYS VAL PRO ARG SEQRES 6 E 95 SER GLN GLU GLU PRO GLY LYS GLY SER PHE TRP ARG ILE SEQRES 7 E 95 ASP PRO ALA SER GLU ALA LYS LEU VAL GLU GLN ALA PHE SEQRES 8 E 95 ARG LYS ARG ARG SEQRES 1 F 18 DA DA DC DG DT DA DA DA DC DA DG DG DA SEQRES 2 F 18 DA DG DT DA DA SEQRES 1 C 18 DA DA DC DG DT DA DA DA DC DA DG DG DA SEQRES 2 C 18 DA DG DT DA DA SEQRES 1 D 17 DT DT DA DC DT DT DC DC DT DG DT DT DT SEQRES 2 D 17 DA DC DG DT SEQRES 1 I 95 SER LYS PRO PRO PHE SER TYR ALA GLN LEU ILE VAL GLN SEQRES 2 I 95 ALA ILE SER SER ALA GLN ASP ARG GLN LEU THR LEU SER SEQRES 3 I 95 GLY ILE TYR ALA HIS ILE THR LYS HIS TYR PRO TYR TYR SEQRES 4 I 95 ARG THR ALA ASP LYS GLY TRP GLN ASN SER ILE ARG HIS SEQRES 5 I 95 ASN LEU SER LEU ASN ARG TYR PHE ILE LYS VAL PRO ARG SEQRES 6 I 95 SER GLN GLU GLU PRO GLY LYS GLY SER PHE TRP ARG ILE SEQRES 7 I 95 ASP PRO ALA SER GLU ALA LYS LEU VAL GLU GLN ALA PHE SEQRES 8 I 95 ARG LYS ARG ARG SEQRES 1 J 95 SER LYS PRO PRO PHE SER TYR ALA GLN LEU ILE VAL GLN SEQRES 2 J 95 ALA ILE SER SER ALA GLN ASP ARG GLN LEU THR LEU SER SEQRES 3 J 95 GLY ILE TYR ALA HIS ILE THR LYS HIS TYR PRO TYR TYR SEQRES 4 J 95 ARG THR ALA ASP LYS GLY TRP GLN ASN SER ILE ARG HIS SEQRES 5 J 95 ASN LEU SER LEU ASN ARG TYR PHE ILE LYS VAL PRO ARG SEQRES 6 J 95 SER GLN GLU GLU PRO GLY LYS GLY SER PHE TRP ARG ILE SEQRES 7 J 95 ASP PRO ALA SER GLU ALA LYS LEU VAL GLU GLN ALA PHE SEQRES 8 J 95 ARG LYS ARG ARG SEQRES 1 B 89 ASN THR ILE TYR LEU TRP GLU PHE LEU LEU ALA LEU LEU SEQRES 2 B 89 GLN ASP LYS ALA THR CYS PRO LYS TYR ILE LYS TRP THR SEQRES 3 B 89 GLN ARG GLU LYS GLY ILE PHE LYS LEU VAL ASP SER LYS SEQRES 4 B 89 ALA VAL SER ARG LEU TRP GLY LYS HIS LYS ASN LYS PRO SEQRES 5 B 89 ASP MET ASN TYR GLU THR MET GLY ARG ALA LEU ARG TYR SEQRES 6 B 89 TYR TYR GLN ARG GLY ILE LEU ALA LYS VAL GLU GLY GLN SEQRES 7 B 89 ARG LEU VAL TYR GLN PHE LYS GLU MET PRO LYS SEQRES 1 H 89 ASN THR ILE TYR LEU TRP GLU PHE LEU LEU ALA LEU LEU SEQRES 2 H 89 GLN ASP LYS ALA THR CYS PRO LYS TYR ILE LYS TRP THR SEQRES 3 H 89 GLN ARG GLU LYS GLY ILE PHE LYS LEU VAL ASP SER LYS SEQRES 4 H 89 ALA VAL SER ARG LEU TRP GLY LYS HIS LYS ASN LYS PRO SEQRES 5 H 89 ASP MET ASN TYR GLU THR MET GLY ARG ALA LEU ARG TYR SEQRES 6 H 89 TYR TYR GLN ARG GLY ILE LEU ALA LYS VAL GLU GLY GLN SEQRES 7 H 89 ARG LEU VAL TYR GLN PHE LYS GLU MET PRO LYS HET GOL F 100 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *34(H2 O) HELIX 1 AA1 SER A 309 ALA A 321 1 13 HELIX 2 AA2 LEU A 328 TYR A 339 1 12 HELIX 3 AA3 LYS A 347 ASN A 360 1 14 HELIX 4 AA4 SER A 385 ALA A 393 1 9 HELIX 5 AA5 SER E 309 ALA E 321 1 13 HELIX 6 AA6 LEU E 328 TYR E 339 1 12 HELIX 7 AA7 LYS E 347 ASN E 360 1 14 HELIX 8 AA8 SER E 385 ALA E 393 1 9 HELIX 9 AA9 SER I 309 ALA I 321 1 13 HELIX 10 AB1 LEU I 328 TYR I 339 1 12 HELIX 11 AB2 LYS I 347 ASN I 360 1 14 HELIX 12 AB3 SER I 385 ALA I 393 1 9 HELIX 13 AB4 SER J 309 ALA J 321 1 13 HELIX 14 AB5 LEU J 328 TYR J 339 1 12 HELIX 15 AB6 LYS J 347 ASN J 360 1 14 HELIX 16 AB7 SER J 385 ALA J 393 1 9 HELIX 17 AB8 TYR B 209 ASP B 220 1 12 HELIX 18 AB9 LYS B 221 CYS B 224 5 4 HELIX 19 AC1 GLN B 232 LYS B 235 5 4 HELIX 20 AC2 ASP B 242 HIS B 253 1 12 HELIX 21 AC3 ASN B 260 GLY B 275 1 16 HELIX 22 AC4 TYR H 209 ASP H 220 1 12 HELIX 23 AC5 LYS H 221 CYS H 224 5 4 HELIX 24 AC6 GLN H 232 LYS H 235 5 4 HELIX 25 AC7 ASP H 242 HIS H 253 1 12 HELIX 26 AC8 ASN H 260 GLY H 275 1 16 SHEET 1 AA1 3 LEU A 326 THR A 327 0 SHEET 2 AA1 3 PHE A 378 ILE A 381 -1 O TRP A 379 N LEU A 326 SHEET 3 AA1 3 PHE A 363 VAL A 366 -1 N VAL A 366 O PHE A 378 SHEET 1 AA2 3 LEU E 326 THR E 327 0 SHEET 2 AA2 3 PHE E 378 ILE E 381 -1 O TRP E 379 N LEU E 326 SHEET 3 AA2 3 PHE E 363 VAL E 366 -1 N VAL E 366 O PHE E 378 SHEET 1 AA3 3 LEU I 326 THR I 327 0 SHEET 2 AA3 3 PHE I 378 ILE I 381 -1 O TRP I 379 N LEU I 326 SHEET 3 AA3 3 PHE I 363 VAL I 366 -1 N VAL I 366 O PHE I 378 SHEET 1 AA4 3 LEU J 326 THR J 327 0 SHEET 2 AA4 3 PHE J 378 ILE J 381 -1 O TRP J 379 N LEU J 326 SHEET 3 AA4 3 PHE J 363 VAL J 366 -1 N VAL J 366 O PHE J 378 SHEET 1 AA5 3 ILE B 228 TRP B 230 0 SHEET 2 AA5 3 ILE B 237 LEU B 240 -1 O LYS B 239 N LYS B 229 SHEET 3 AA5 3 VAL B 286 GLN B 288 -1 O TYR B 287 N PHE B 238 SHEET 1 AA6 3 ILE H 228 TRP H 230 0 SHEET 2 AA6 3 ILE H 237 LEU H 240 -1 O LYS H 239 N LYS H 229 SHEET 3 AA6 3 VAL H 286 GLN H 288 -1 O TYR H 287 N PHE H 238 CRYST1 66.181 105.868 68.194 90.00 112.94 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015110 0.000000 0.006395 0.00000 SCALE2 0.000000 0.009446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015923 0.00000