HEADER FLAVOPROTEIN 15-DEC-22 8C05 TITLE LOV-ACTIVATED DIGUANYLATE CYCLASE, DARK-STATE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR DOMAIN-CONTAINING DIGUANYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOTENERA SP.; SOURCE 3 ORGANISM_TAXID: 2051956; SOURCE 4 GENE: CTY33_01890; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LOV, GGDEF, C-DI-GMP, FMN, LINKER, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.VIDE,A.WINKLER REVDAT 2 23-AUG-23 8C05 1 JRNL REVDAT 1 19-JUL-23 8C05 0 JRNL AUTH U.VIDE,D.KASAPOVIC,M.FUCHS,M.P.HEIMBOCK,M.G.TOTARO, JRNL AUTH 2 E.ZENZMAIER,A.WINKLER JRNL TITL ILLUMINATING THE INNER WORKINGS OF A NATURAL PROTEIN SWITCH: JRNL TITL 2 BLUE-LIGHT SENSING IN LOV-ACTIVATED DIGUANYLATE CYCLASES. JRNL REF SCI ADV V. 9 H4721 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37531459 JRNL DOI 10.1126/SCIADV.ADH4721 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 11153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8000 - 3.9700 1.00 2888 152 0.2231 0.2496 REMARK 3 2 3.9700 - 3.1500 0.99 2634 139 0.2937 0.3611 REMARK 3 3 3.1500 - 2.7500 0.98 2572 134 0.3411 0.3831 REMARK 3 4 2.7500 - 2.5000 0.97 2501 133 0.3180 0.4178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.304 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2518 REMARK 3 ANGLE : 0.393 3416 REMARK 3 CHIRALITY : 0.038 385 REMARK 3 PLANARITY : 0.002 435 REMARK 3 DIHEDRAL : 10.094 927 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5637 -3.7312 3.5828 REMARK 3 T TENSOR REMARK 3 T11: 1.9689 T22: 1.4001 REMARK 3 T33: 1.0803 T12: 0.6637 REMARK 3 T13: -0.0093 T23: 0.1539 REMARK 3 L TENSOR REMARK 3 L11: 5.0343 L22: 7.9842 REMARK 3 L33: 5.9224 L12: 0.8915 REMARK 3 L13: 4.3941 L23: 2.4700 REMARK 3 S TENSOR REMARK 3 S11: 1.3739 S12: -0.5979 S13: -2.3168 REMARK 3 S21: 1.4832 S22: -0.6305 S23: -2.7770 REMARK 3 S31: 2.5823 S32: 0.8183 S33: -0.2820 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9409 -6.0557 -13.6690 REMARK 3 T TENSOR REMARK 3 T11: 1.5688 T22: 0.5438 REMARK 3 T33: 0.8194 T12: -0.1083 REMARK 3 T13: 0.0782 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.7885 L22: 3.6918 REMARK 3 L33: 1.9705 L12: -0.3564 REMARK 3 L13: 0.3547 L23: 0.7261 REMARK 3 S TENSOR REMARK 3 S11: -0.3818 S12: 0.3006 S13: -0.0273 REMARK 3 S21: -0.3328 S22: 0.3161 S23: 0.0727 REMARK 3 S31: 0.6999 S32: 0.1569 S33: 0.0227 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3429 4.5110 -15.3337 REMARK 3 T TENSOR REMARK 3 T11: 1.7099 T22: 2.5284 REMARK 3 T33: 1.5355 T12: 0.0843 REMARK 3 T13: 0.2342 T23: -0.6688 REMARK 3 L TENSOR REMARK 3 L11: 2.4927 L22: 0.1422 REMARK 3 L33: 3.0349 L12: -0.0944 REMARK 3 L13: 2.6266 L23: -0.0686 REMARK 3 S TENSOR REMARK 3 S11: 0.9872 S12: -2.0381 S13: 1.3479 REMARK 3 S21: 1.1079 S22: -0.3539 S23: 0.9645 REMARK 3 S31: 0.6831 S32: 0.2538 S33: -0.7437 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3073 6.9016 -2.7139 REMARK 3 T TENSOR REMARK 3 T11: 1.4447 T22: 0.4681 REMARK 3 T33: 0.8936 T12: -0.0279 REMARK 3 T13: 0.1274 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.5585 L22: 3.2947 REMARK 3 L33: 3.0796 L12: -1.8246 REMARK 3 L13: 0.6012 L23: -0.2517 REMARK 3 S TENSOR REMARK 3 S11: 0.0136 S12: -0.4880 S13: -0.5437 REMARK 3 S21: 0.2100 S22: 0.1479 S23: 0.8218 REMARK 3 S31: -0.5056 S32: -0.2751 S33: -0.1969 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8676 16.9976 -16.3199 REMARK 3 T TENSOR REMARK 3 T11: 1.6713 T22: 0.3278 REMARK 3 T33: 0.8938 T12: -0.3837 REMARK 3 T13: -0.0865 T23: 0.1003 REMARK 3 L TENSOR REMARK 3 L11: 3.6877 L22: 1.6098 REMARK 3 L33: 1.8420 L12: 1.1609 REMARK 3 L13: 0.9325 L23: 0.3409 REMARK 3 S TENSOR REMARK 3 S11: -0.4028 S12: 0.4114 S13: -0.0032 REMARK 3 S21: 0.0762 S22: 0.2141 S23: 0.1471 REMARK 3 S31: -0.6631 S32: -0.2143 S33: 0.1878 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0182 25.1986 -16.2166 REMARK 3 T TENSOR REMARK 3 T11: 1.6758 T22: 0.3787 REMARK 3 T33: 1.0523 T12: -0.4038 REMARK 3 T13: -0.2679 T23: 0.2107 REMARK 3 L TENSOR REMARK 3 L11: 3.9829 L22: 4.9705 REMARK 3 L33: 3.0757 L12: -1.2382 REMARK 3 L13: 0.0018 L23: 0.0790 REMARK 3 S TENSOR REMARK 3 S11: -0.5377 S12: 0.4247 S13: 0.8567 REMARK 3 S21: 0.7603 S22: 0.5229 S23: -0.1065 REMARK 3 S31: -0.6891 S32: 0.7507 S33: 0.1624 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03312 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.02 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION FEB 5, 2021 REMARK 200 BUILT=20210323 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11310 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.36 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BIPYRAMID-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM FORMATE, 0.1 M AMMONIUM REMARK 280 ACETATE, 0.1 M SODIUM CITRATE TRIBASIC DIHYDRATE, 0.1 M REMARK 280 POTASSIUM SODIUM TARTRATE TETRAHYDRATE, 0.1 M SODIUM OXAMATE, REMARK 280 0.1 M SODIUM HEPES; MOPS (ACID), PH 7.5, 20% V/V GLYCEROL; 10% W/ REMARK 280 V PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.01333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 212.02667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 159.02000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 265.03333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.00667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.01333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 212.02667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 265.03333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 159.02000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.00667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 HIS A 134 REMARK 465 LEU A 135 REMARK 465 LEU A 136 REMARK 465 LYS A 137 REMARK 465 GLU A 313 REMARK 465 GLN A 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 ASN A 133 CG OD1 ND2 REMARK 470 SER A 138 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 71.50 54.29 REMARK 500 ILE A 109 55.35 37.89 REMARK 500 ASN A 287 -13.02 67.18 REMARK 500 LYS A 305 -6.21 64.65 REMARK 500 ASN A 306 54.98 -150.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 185 OD2 REMARK 620 2 ILE A 186 O 89.0 REMARK 620 3 GLU A 229 OE1 111.1 82.5 REMARK 620 4 GLU A 229 OE2 96.1 137.3 56.0 REMARK 620 5 DPO A 402 O3 132.5 70.4 108.2 128.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDQT8 RELATED DB: SASBDB REMARK 900 DARK-STATE LOV-ACTIVATED DIGUANYLATE CYCLASE REMARK 900 RELATED ID: SASDQU8 RELATED DB: SASBDB REMARK 900 LIGHT-STATE LOV-ACTIVATED DIGUANYLATE CYCLASE DBREF1 8C05 A 3 314 UNP A0A2S5LZS0_9PROT DBREF2 8C05 A A0A2S5LZS0 3 314 SEQADV 8C05 GLY A -6 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 GLY A -5 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 GLY A -4 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 GLY A -3 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 GLY A -2 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 GLY A -1 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 ALA A 0 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 MET A 1 UNP A0A2S5LZS EXPRESSION TAG SEQADV 8C05 VAL A 2 UNP A0A2S5LZS EXPRESSION TAG SEQRES 1 A 321 GLY GLY GLY GLY GLY GLY ALA MET VAL GLU GLN TYR LEU SEQRES 2 A 321 LEU GLU ALA ILE VAL ARG ASP ALA ARG ASP GLY ILE THR SEQRES 3 A 321 ILE SER ASP CYS SER ARG PRO ASP ASN PRO LEU VAL PHE SEQRES 4 A 321 VAL ASN ASP ALA PHE THR ARG MET THR GLY TYR ASP ALA SEQRES 5 A 321 GLU GLU VAL ILE GLY LYS ASN CYS ARG PHE LEU GLN ARG SEQRES 6 A 321 GLY ASP ILE ASN LEU SER ALA VAL HIS THR ILE LYS ILE SEQRES 7 A 321 ALA MET LEU THR HIS GLU PRO CYS LEU VAL THR LEU LYS SEQRES 8 A 321 ASN TYR ARG LYS ASP GLY THR ILE PHE TRP ASN GLU LEU SEQRES 9 A 321 SER LEU THR PRO ILE ILE ASN LYS ASN GLY LEU ILE THR SEQRES 10 A 321 HIS TYR LEU GLY ILE GLN LYS ASP VAL SER ALA GLN VAL SEQRES 11 A 321 ILE LEU ASN GLN THR LEU HIS GLU GLU ASN HIS LEU LEU SEQRES 12 A 321 LYS SER ASN LYS GLU MET LEU GLU TYR LEU VAL ASN ILE SEQRES 13 A 321 ASP ALA LEU THR GLY LEU HIS ASN ARG ARG PHE LEU GLU SEQRES 14 A 321 ASP GLN LEU VAL ILE GLN TRP LYS LEU ALA SER ARG HIS SEQRES 15 A 321 ILE ASN THR ILE THR ILE PHE MET ILE ASP ILE ASP TYR SEQRES 16 A 321 PHE LYS ALA PHE ASN ASP THR TYR GLY HIS THR ALA GLY SEQRES 17 A 321 ASP GLU ALA LEU ARG THR ILE ALA LYS THR LEU ASN ASN SEQRES 18 A 321 CYS PHE MET ARG GLY SER ASP PHE VAL ALA ARG TYR GLY SEQRES 19 A 321 GLY GLU GLU PHE THR ILE LEU ALA ILE GLY MET THR GLU SEQRES 20 A 321 LEU GLN ALA HIS GLU TYR SER THR LYS LEU VAL GLN LYS SEQRES 21 A 321 ILE GLU ASN LEU ASN ILE HIS HIS LYS GLY SER PRO LEU SEQRES 22 A 321 GLY HIS LEU THR ILE SER LEU GLY TYR SER GLN ALA ASN SEQRES 23 A 321 PRO GLN TYR HIS ASN ASP GLN ASN LEU VAL ILE GLU GLN SEQRES 24 A 321 ALA ASP ARG ALA LEU TYR SER ALA LYS VAL GLU GLY LYS SEQRES 25 A 321 ASN ARG ALA VAL ALA TYR ARG GLU GLN HET FMN A 401 31 HET DPO A 402 9 HET MG A 403 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM DPO DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 DPO O7 P2 4- FORMUL 4 MG MG 2+ HELIX 1 AA1 TYR A 5 ASP A 13 1 9 HELIX 2 AA2 ASN A 34 GLY A 42 1 9 HELIX 3 AA3 ASP A 44 ILE A 49 1 6 HELIX 4 AA4 ASN A 52 GLN A 57 5 6 HELIX 5 AA5 ASN A 62 THR A 75 1 14 HELIX 6 AA6 VAL A 119 HIS A 130 1 12 HELIX 7 AA7 ASN A 139 LEU A 146 1 8 HELIX 8 AA8 VAL A 147 ILE A 149 5 3 HELIX 9 AA9 ASN A 157 ILE A 176 1 20 HELIX 10 AB1 TYR A 188 TYR A 196 1 9 HELIX 11 AB2 GLY A 197 ASN A 213 1 17 HELIX 12 AB3 THR A 239 ASN A 258 1 20 HELIX 13 AB4 ASN A 279 ASN A 284 1 6 HELIX 14 AB5 ASN A 287 GLY A 304 1 18 SHEET 1 AA1 5 LEU A 30 VAL A 33 0 SHEET 2 AA1 5 GLY A 17 ASP A 22 -1 N ILE A 20 O VAL A 31 SHEET 3 AA1 5 GLY A 107 ASP A 118 -1 O GLY A 114 N THR A 19 SHEET 4 AA1 5 ILE A 92 ASN A 104 -1 N THR A 100 O LEU A 113 SHEET 5 AA1 5 CYS A 79 TYR A 86 -1 N LEU A 83 O ASN A 95 SHEET 1 AA2 5 PHE A 222 ARG A 225 0 SHEET 2 AA2 5 GLU A 230 ILE A 236 -1 O THR A 232 N ALA A 224 SHEET 3 AA2 5 ILE A 179 ILE A 186 -1 N ILE A 184 O PHE A 231 SHEET 4 AA2 5 ILE A 271 ALA A 278 -1 O ALA A 278 N ILE A 179 SHEET 5 AA2 5 ALA A 308 ALA A 310 1 O VAL A 309 N LEU A 273 LINK OD2 ASP A 185 MG MG A 403 1555 1555 2.06 LINK O ILE A 186 MG MG A 403 1555 1555 2.40 LINK OE1 GLU A 229 MG MG A 403 1555 1555 2.14 LINK OE2 GLU A 229 MG MG A 403 1555 1555 2.49 LINK O3 DPO A 402 MG MG A 403 1555 1555 2.60 CRYST1 56.350 56.350 318.040 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017746 0.010246 0.000000 0.00000 SCALE2 0.000000 0.020492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003144 0.00000