HEADER VIRAL PROTEIN 16-DEC-22 8C0G TITLE SARS-COV NSP16-NSP10 COMPLEXED WITH N7-GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NSP7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: NSP7; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME-RELATED SOURCE 3 CORONAVIRUS; SOURCE 4 ORGANISM_TAXID: 694009; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME-RELATED SOURCE 10 CORONAVIRUS; SOURCE 11 ORGANISM_TAXID: 694009; SOURCE 12 GENE: REP, 1A-1B; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS 2'O-METHYLTRANSFERASE GUANOSINE TRI-PHOSPHATE, VIRAL PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, MARSEILLES STRUCTURAL GENOMICS PROGRAM @ AFMB, KEYWDS 3 MSGP EXPDTA X-RAY DIFFRACTION AUTHOR F.FERRON,C.DEBARNOT,B.COUTARD,B.CANARD,MARSEILLES STRUCTURAL GENOMICS AUTHOR 2 PROGRAM @ AFMB (MSGP) REVDAT 1 27-DEC-23 8C0G 0 JRNL AUTH F.FERRON,B.CANARD,C.DEBARNOT,B.COUTARD JRNL TITL OBSERVATION OF N7-GTP IN NSP16-NSP10 SARS-COV JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 64972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3167 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.42 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4834 REMARK 3 BIN FREE R VALUE : 0.5563 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 63 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3115 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.19990 REMARK 3 B22 (A**2) : 14.85660 REMARK 3 B33 (A**2) : 4.34330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.123 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.116 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.119 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.113 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3284 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4496 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1097 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 550 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3248 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 433 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2818 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 36.5792 72.5349 -8.041 REMARK 3 T TENSOR REMARK 3 T11: 0 T22: 0 REMARK 3 T33: 0 T12: 0 REMARK 3 T13: 0 T23: 0 REMARK 3 L TENSOR REMARK 3 L11: 0 L22: 0 REMARK 3 L33: 0 L12: 0 REMARK 3 L13: 0 L23: 0 REMARK 3 S TENSOR REMARK 3 S11: 0 S12: 0 S13: 0 REMARK 3 S21: 0 S22: 0 S23: 0 REMARK 3 S31: 0 S32: 0 S33: 0 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 35.941 41.0387 -11.4458 REMARK 3 T TENSOR REMARK 3 T11: 0 T22: 0 REMARK 3 T33: 0 T12: 0 REMARK 3 T13: 0 T23: 0 REMARK 3 L TENSOR REMARK 3 L11: 0 L22: 0 REMARK 3 L33: 0 L12: 0 REMARK 3 L13: 0 L23: 0 REMARK 3 S TENSOR REMARK 3 S11: 0 S12: 0 S13: 0 REMARK 3 S21: 0 S22: 0 S23: 0 REMARK 3 S31: 0 S32: 0 S33: 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8C0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20220220 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 472780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 92.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 92.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 67 MM M CHES, 0.99 M MGCL2-HEXAYDRATE, REMARK 280 33 MM TRIS-HCL, 8.3% (V/V) PEG 8000, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.28850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.28850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.61600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 92.52100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.61600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 92.52100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.28850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.61600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 92.52100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.28850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.61600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 92.52100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 SER A 290 REMARK 465 SER A 291 REMARK 465 ASN B 10 REMARK 465 ASP B 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 OG REMARK 470 GLN A 27 CG CD OE1 NE2 REMARK 470 TYR A 29 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 VAL A 117 CG1 CG2 REMARK 470 ASP A 132 CG OD1 OD2 REMARK 470 PRO A 133 CG CD REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 THR A 135 OG1 CG2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 HIS A 137 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 138 CG1 CG2 REMARK 470 THR A 139 OG1 CG2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 SER B 129 OG REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TYR A 29 REMARK 475 ASP A 132 REMARK 475 ARG A 134 REMARK 475 THR A 135 REMARK 475 LYS A 136 REMARK 475 HIS A 137 REMARK 475 VAL A 138 REMARK 475 LYS A 140 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 139 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 488 O HOH A 549 3654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 73.25 -115.80 REMARK 500 LYS A 136 -93.49 42.44 REMARK 500 HIS A 137 73.58 48.72 REMARK 500 THR A 139 -118.96 38.89 REMARK 500 ASN A 142 71.84 -113.54 REMARK 500 GLU A 146 -124.00 -91.83 REMARK 500 ASN A 209 84.63 64.81 REMARK 500 TYR B 126 -56.20 -127.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 597 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 599 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 600 DISTANCE = 12.39 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 13.15 ANGSTROMS REMARK 525 HOH A 602 DISTANCE = 13.54 ANGSTROMS REMARK 525 HOH B 561 DISTANCE = 10.17 ANGSTROMS REMARK 525 HOH B 562 DISTANCE = 11.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 274 O REMARK 620 2 LEU A 279 O 131.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 74 SG REMARK 620 2 CYS B 77 SG 114.0 REMARK 620 3 HIS B 83 NE2 106.6 104.0 REMARK 620 4 CYS B 90 SG 110.7 114.5 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 120 SG 104.2 REMARK 620 3 CYS B 128 SG 116.4 102.1 REMARK 620 4 CYS B 130 SG 122.7 95.4 111.0 REMARK 620 N 1 2 3 DBREF 8C0G A 0 291 UNP P0C6X7 R1AB_SARS 6776 7067 DBREF 8C0G B 10 131 UNP P0C6X7 R1AB_SARS 4240 4361 SEQRES 1 A 292 ALA SER GLN ALA TRP GLN PRO GLY VAL ALA MET PRO ASN SEQRES 2 A 292 LEU TYR LYS MET GLN ARG MET LEU LEU GLU LYS CYS ASP SEQRES 3 A 292 LEU GLN ASN TYR GLY GLU ASN ALA VAL ILE PRO LYS GLY SEQRES 4 A 292 ILE MET MET ASN VAL ALA LYS TYR THR GLN LEU CYS GLN SEQRES 5 A 292 TYR LEU ASN THR LEU THR LEU ALA VAL PRO TYR ASN MET SEQRES 6 A 292 ARG VAL ILE HIS PHE GLY ALA GLY SER ASP LYS GLY VAL SEQRES 7 A 292 ALA PRO GLY THR ALA VAL LEU ARG GLN TRP LEU PRO THR SEQRES 8 A 292 GLY THR LEU LEU VAL ASP SER ASP LEU ASN ASP PHE VAL SEQRES 9 A 292 SER ASP ALA ASP SER THR LEU ILE GLY ASP CYS ALA THR SEQRES 10 A 292 VAL HIS THR ALA ASN LYS TRP ASP LEU ILE ILE SER ASP SEQRES 11 A 292 MET TYR ASP PRO ARG THR LYS HIS VAL THR LYS GLU ASN SEQRES 12 A 292 ASP SER LYS GLU GLY PHE PHE THR TYR LEU CYS GLY PHE SEQRES 13 A 292 ILE LYS GLN LYS LEU ALA LEU GLY GLY SER ILE ALA VAL SEQRES 14 A 292 LYS ILE THR GLU HIS SER TRP ASN ALA ASP LEU TYR LYS SEQRES 15 A 292 LEU MET GLY HIS PHE SER TRP TRP THR ALA PHE VAL THR SEQRES 16 A 292 ASN VAL ASN ALA SER SER SER GLU ALA PHE LEU ILE GLY SEQRES 17 A 292 ALA ASN TYR LEU GLY LYS PRO LYS GLU GLN ILE ASP GLY SEQRES 18 A 292 TYR THR MET HIS ALA ASN TYR ILE PHE TRP ARG ASN THR SEQRES 19 A 292 ASN PRO ILE GLN LEU SER SER TYR SER LEU PHE ASP MET SEQRES 20 A 292 SER LYS PHE PRO LEU LYS LEU ARG GLY THR ALA VAL MET SEQRES 21 A 292 SER LEU LYS GLU ASN GLN ILE ASN ASP MET ILE TYR SER SEQRES 22 A 292 LEU LEU GLU LYS GLY ARG LEU ILE ILE ARG GLU ASN ASN SEQRES 23 A 292 ARG VAL VAL VAL SER SER SEQRES 1 B 122 ASN SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL ASP SEQRES 2 B 122 PRO ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY GLY SEQRES 3 B 122 GLN PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR HIS SEQRES 4 B 122 THR GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU ALA SEQRES 5 B 122 ASN MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS CYS SEQRES 6 B 122 LEU TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO LYS SEQRES 7 B 122 GLY PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE PRO SEQRES 8 B 122 THR THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU ARG SEQRES 9 B 122 ASN THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY TYR SEQRES 10 B 122 GLY CYS SER CYS ASP HET PEG A 301 17 HET SRC A 302 49 HET PEG A 303 17 HET NA A 304 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SRC [[(2~{R},3~{S},5~{R})-5-(2-AZANYL-7-METHYL-6- HETNAM 2 SRC OXIDANYLIDENE-1,8-DIHYDROPURIN-9-YL)-3,4- HETNAM 3 SRC BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETNAM 4 SRC PHOSPHONO HYDROGEN PHOSPHATE HETNAM NA SODIUM ION HETNAM ZN ZINC ION FORMUL 3 PEG 2(C4 H10 O3) FORMUL 4 SRC C11 H20 N5 O14 P3 FORMUL 6 NA NA 1+ FORMUL 7 ZN 2(ZN 2+) FORMUL 9 HOH *264(H2 O) HELIX 1 AA1 PRO A 11 MET A 16 1 6 HELIX 2 AA2 MET A 40 ASN A 54 1 15 HELIX 3 AA3 ALA A 78 LEU A 88 1 11 HELIX 4 AA4 ASP A 113 VAL A 117 5 5 HELIX 5 AA5 GLY A 147 LYS A 159 1 13 HELIX 6 AA6 ASN A 176 GLY A 184 1 9 HELIX 7 AA7 VAL A 196 ALA A 198 5 3 HELIX 8 AA8 ASP A 219 ASN A 234 1 16 HELIX 9 AA9 SER A 240 ASP A 245 5 6 HELIX 10 AB1 LYS A 262 ILE A 266 5 5 HELIX 11 AB2 ASN A 267 LYS A 276 1 10 HELIX 12 AB3 THR B 12 PHE B 19 1 8 HELIX 13 AB4 ASP B 22 SER B 33 1 12 HELIX 14 AB5 ALA B 71 CYS B 73 5 3 HELIX 15 AB6 CYS B 74 HIS B 80 1 7 HELIX 16 AB7 THR B 102 ALA B 104 5 3 HELIX 17 AB8 ASP B 106 ASN B 114 1 9 SHEET 1 AA1 8 GLY A 7 ALA A 9 0 SHEET 2 AA1 8 PHE A 186 THR A 194 -1 O VAL A 193 N VAL A 8 SHEET 3 AA1 8 ALA A 203 TYR A 210 -1 O PHE A 204 N PHE A 192 SHEET 4 AA1 8 LEU A 160 ILE A 170 -1 N VAL A 168 O LEU A 205 SHEET 5 AA1 8 TRP A 123 SER A 128 1 N TRP A 123 O ALA A 161 SHEET 6 AA1 8 ARG A 65 PHE A 69 1 N PHE A 69 O ILE A 127 SHEET 7 AA1 8 LEU A 93 ASP A 98 1 O LEU A 93 N VAL A 66 SHEET 8 AA1 8 SER A 108 ILE A 111 1 O LEU A 110 N ASP A 96 SHEET 1 AA2 2 ALA A 257 MET A 259 0 SHEET 2 AA2 2 LEU A 279 ILE A 281 1 O ILE A 280 N MET A 259 SHEET 1 AA3 3 ILE B 55 THR B 56 0 SHEET 2 AA3 3 TYR B 96 PRO B 100 -1 O TYR B 96 N THR B 56 SHEET 3 AA3 3 GLN B 65 GLY B 69 -1 N GLU B 66 O ILE B 99 LINK O LEU A 274 NA NA A 304 1555 1555 2.70 LINK O LEU A 279 NA NA A 304 1555 1555 2.63 LINK SG CYS B 74 ZN ZN B 401 1555 1555 2.23 LINK SG CYS B 77 ZN ZN B 401 1555 1555 2.15 LINK NE2 HIS B 83 ZN ZN B 401 1555 1555 2.02 LINK SG CYS B 90 ZN ZN B 401 1555 1555 2.44 LINK SG CYS B 117 ZN ZN B 402 1555 1555 2.17 LINK SG CYS B 120 ZN ZN B 402 1555 1555 2.54 LINK SG CYS B 128 ZN ZN B 402 1555 1555 2.16 LINK SG CYS B 130 ZN ZN B 402 1555 1555 2.69 CRYST1 67.232 185.042 128.577 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014874 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007777 0.00000