HEADER TRANSFERASE 19-DEC-22 8C0U TITLE 1,6-ANHYDRO-N-ACTETYLMURAMIC ACID KINASE (ANMK) IN COMPLEX WITH THEIR TITLE 2 NATURAL SUBSTRATES AND PRODUCTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANHYDRO-N-ACETYLMURAMIC ACID KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANHMURNAC KINASE; COMPND 5 EC: 2.7.1.170; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: TAG GAGAG IN N-TERMINAL. THESE 5 RESIDUES ARE NOT COMPND 8 OBSERVED IN THE STRUCTURE, BUT ARE PRESENT IN THE USED SAMPLE. THEY COMPND 9 HAVE TO BE INCLUDED IN THE SEQUENCE BETWEEN NUMBERS -4 TO 0. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: ANMK, PA0666; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANHYDRO-SUGAR KINASE PHOSPHOTRANSFERASE ATP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.JIMENEZ-FARACO,J.A.HERMOSO REVDAT 2 25-OCT-23 8C0U 1 JRNL REVDAT 1 20-SEP-23 8C0U 0 JRNL AUTH A.M.EL-ARABY,E.JIMENEZ-FARACO,R.FELTZER,J.M.MARTIN-GARCIA, JRNL AUTH 2 B.R.KARRI,B.RAMACHANDRAN,C.KIM,J.F.FISHER,J.A.HERMOSO, JRNL AUTH 3 S.MOBASHERY JRNL TITL CATALYTIC PROCESS OF ANHYDRO-N-ACETYLMURAMIC ACID KINASE JRNL TITL 2 FROM PSEUDOMONAS AERUGINOSA. JRNL REF J.BIOL.CHEM. V. 299 05198 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37660917 JRNL DOI 10.1016/J.JBC.2023.105198 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 42061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.891 REMARK 3 FREE R VALUE TEST SET COUNT : 2057 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 31.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13600 REMARK 3 B22 (A**2) : -0.13600 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : -0.06800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.299 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.792 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5734 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5362 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7818 ; 0.849 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12316 ; 0.289 ; 1.565 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 724 ; 5.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ; 7.250 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 866 ;12.715 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 864 ; 0.042 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6874 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1318 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1190 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 36 ; 0.153 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2774 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2904 ; 1.790 ; 4.713 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2904 ; 1.790 ; 4.713 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3625 ; 2.941 ; 8.478 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3626 ; 2.941 ; 8.478 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2830 ; 1.660 ; 4.947 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2825 ; 1.653 ; 4.946 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4193 ; 2.771 ; 9.002 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4194 ; 2.770 ; 9.001 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 365 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5261 2.1954 1.6415 REMARK 3 T TENSOR REMARK 3 T11: 0.0096 T22: 0.0162 REMARK 3 T33: 0.0195 T12: -0.0041 REMARK 3 T13: 0.0122 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1829 L22: 0.0686 REMARK 3 L33: 0.1745 L12: -0.0321 REMARK 3 L13: 0.0223 L23: 0.0204 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0329 S13: 0.0016 REMARK 3 S21: 0.0102 S22: -0.0163 S23: 0.0263 REMARK 3 S31: -0.0020 S32: 0.0103 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -32.2096 7.7487 -37.9837 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.0124 REMARK 3 T33: 0.0192 T12: 0.0033 REMARK 3 T13: 0.0130 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.1180 L22: 0.1821 REMARK 3 L33: 0.1541 L12: -0.0290 REMARK 3 L13: 0.0677 L23: -0.1170 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.0142 S13: -0.0147 REMARK 3 S21: -0.0506 S22: -0.0259 S23: -0.0238 REMARK 3 S31: 0.0262 S32: 0.0094 S33: 0.0213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8C0U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292126969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2022 REMARK 200 DATA SCALING SOFTWARE : STARANISO V3.347 1-SEP-2022 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 46.764 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 24.80 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.555 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.1.016 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, BIS-TRIS 0.1 M, PH 6.0, REMARK 280 LI2SO4 0.2 M, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.23900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.23900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.23900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 GLY A 0 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 112 83.59 -3.89 REMARK 500 ARG A 198 -72.61 66.56 REMARK 500 GLN B 23 71.34 -116.23 REMARK 500 HIS B 33 115.67 -162.48 REMARK 500 ASN B 112 82.07 4.11 REMARK 500 LEU B 172 77.11 -109.78 REMARK 500 ARG B 240 -66.78 -105.64 REMARK 500 PRO B 254 -179.72 -67.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 129 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8BRE RELATED DB: PDB REMARK 900 APO PROTEIN DBREF 8C0U A 1 363 UNP Q9I5Q5 ANMK_PSEAE 1 363 DBREF 8C0U B 1 363 UNP Q9I5Q5 ANMK_PSEAE 1 363 SEQADV 8C0U GLY A -4 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U ALA A -3 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U GLY A -2 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U ALA A -1 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U GLY A 0 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U GLY B -4 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U ALA B -3 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U GLY B -2 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U ALA B -1 UNP Q9I5Q5 EXPRESSION TAG SEQADV 8C0U GLY B 0 UNP Q9I5Q5 EXPRESSION TAG SEQRES 1 A 368 GLY ALA GLY ALA GLY MET PRO ARG TYR LEU GLY LEU MET SEQRES 2 A 368 SER GLY THR SER LEU ASP GLY MET ASP ILE VAL LEU ILE SEQRES 3 A 368 GLU GLN GLY ASP ARG THR THR LEU LEU ALA SER HIS TYR SEQRES 4 A 368 LEU PRO MET PRO ALA GLY LEU ARG GLU ASP ILE LEU ALA SEQRES 5 A 368 LEU CYS VAL PRO GLY PRO ASP GLU ILE ALA ARG ALA ALA SEQRES 6 A 368 GLU VAL GLU GLN ARG TRP VAL ALA LEU ALA ALA GLN GLY SEQRES 7 A 368 VAL ARG GLU LEU LEU LEU GLN GLN GLN MET SER PRO ASP SEQRES 8 A 368 GLU VAL ARG ALA ILE GLY SER HIS GLY GLN THR ILE ARG SEQRES 9 A 368 HIS GLU PRO ALA ARG HIS PHE THR VAL GLN ILE GLY ASN SEQRES 10 A 368 PRO ALA LEU LEU ALA GLU LEU THR GLY ILE ASP VAL VAL SEQRES 11 A 368 ALA ASP PHE ARG ARG ARG ASP VAL ALA ALA GLY GLY GLN SEQRES 12 A 368 GLY ALA PRO LEU VAL PRO ALA PHE HIS GLN ALA LEU PHE SEQRES 13 A 368 GLY ASP ASP ASP THR SER ARG ALA VAL LEU ASN ILE GLY SEQRES 14 A 368 GLY PHE SER ASN VAL SER LEU LEU SER PRO GLY LYS PRO SEQRES 15 A 368 VAL ARG GLY PHE ASP CYS GLY PRO GLY ASN VAL LEU MET SEQRES 16 A 368 ASP ALA TRP ILE HIS HIS GLN ARG GLY GLU HIS PHE ASP SEQRES 17 A 368 ARG ASP GLY ALA TRP ALA ALA SER GLY GLN VAL ASN HIS SEQRES 18 A 368 ALA LEU LEU ALA SER LEU LEU ALA ASP GLU PHE PHE ALA SEQRES 19 A 368 ALA ARG GLY PRO LYS SER THR GLY ARG GLU ARG PHE ASN SEQRES 20 A 368 LEU PRO TRP LEU GLN GLU HIS LEU ALA ARG HIS PRO ALA SEQRES 21 A 368 LEU PRO ALA ALA ASP ILE GLN ALA THR LEU LEU GLU LEU SEQRES 22 A 368 SER ALA ARG SER ILE SER GLU SER LEU LEU ASP ALA GLN SEQRES 23 A 368 PRO ASP CYS GLU GLU VAL LEU VAL CYS GLY GLY GLY ALA SEQRES 24 A 368 PHE ASN THR ALA LEU MET LYS ARG LEU ALA MET LEU MET SEQRES 25 A 368 PRO GLU ALA ARG VAL ALA SER THR ASP GLU TYR GLY ILE SEQRES 26 A 368 PRO PRO ALA TRP MET GLU GLY MET ALA PHE ALA TRP LEU SEQRES 27 A 368 ALA HIS ARG PHE LEU GLU ARG LEU PRO GLY ASN CYS PRO SEQRES 28 A 368 ASP VAL THR GLY ALA LEU GLY PRO ARG THR LEU GLY ALA SEQRES 29 A 368 LEU TYR PRO ALA SEQRES 1 B 368 GLY ALA GLY ALA GLY MET PRO ARG TYR LEU GLY LEU MET SEQRES 2 B 368 SER GLY THR SER LEU ASP GLY MET ASP ILE VAL LEU ILE SEQRES 3 B 368 GLU GLN GLY ASP ARG THR THR LEU LEU ALA SER HIS TYR SEQRES 4 B 368 LEU PRO MET PRO ALA GLY LEU ARG GLU ASP ILE LEU ALA SEQRES 5 B 368 LEU CYS VAL PRO GLY PRO ASP GLU ILE ALA ARG ALA ALA SEQRES 6 B 368 GLU VAL GLU GLN ARG TRP VAL ALA LEU ALA ALA GLN GLY SEQRES 7 B 368 VAL ARG GLU LEU LEU LEU GLN GLN GLN MET SER PRO ASP SEQRES 8 B 368 GLU VAL ARG ALA ILE GLY SER HIS GLY GLN THR ILE ARG SEQRES 9 B 368 HIS GLU PRO ALA ARG HIS PHE THR VAL GLN ILE GLY ASN SEQRES 10 B 368 PRO ALA LEU LEU ALA GLU LEU THR GLY ILE ASP VAL VAL SEQRES 11 B 368 ALA ASP PHE ARG ARG ARG ASP VAL ALA ALA GLY GLY GLN SEQRES 12 B 368 GLY ALA PRO LEU VAL PRO ALA PHE HIS GLN ALA LEU PHE SEQRES 13 B 368 GLY ASP ASP ASP THR SER ARG ALA VAL LEU ASN ILE GLY SEQRES 14 B 368 GLY PHE SER ASN VAL SER LEU LEU SER PRO GLY LYS PRO SEQRES 15 B 368 VAL ARG GLY PHE ASP CYS GLY PRO GLY ASN VAL LEU MET SEQRES 16 B 368 ASP ALA TRP ILE HIS HIS GLN ARG GLY GLU HIS PHE ASP SEQRES 17 B 368 ARG ASP GLY ALA TRP ALA ALA SER GLY GLN VAL ASN HIS SEQRES 18 B 368 ALA LEU LEU ALA SER LEU LEU ALA ASP GLU PHE PHE ALA SEQRES 19 B 368 ALA ARG GLY PRO LYS SER THR GLY ARG GLU ARG PHE ASN SEQRES 20 B 368 LEU PRO TRP LEU GLN GLU HIS LEU ALA ARG HIS PRO ALA SEQRES 21 B 368 LEU PRO ALA ALA ASP ILE GLN ALA THR LEU LEU GLU LEU SEQRES 22 B 368 SER ALA ARG SER ILE SER GLU SER LEU LEU ASP ALA GLN SEQRES 23 B 368 PRO ASP CYS GLU GLU VAL LEU VAL CYS GLY GLY GLY ALA SEQRES 24 B 368 PHE ASN THR ALA LEU MET LYS ARG LEU ALA MET LEU MET SEQRES 25 B 368 PRO GLU ALA ARG VAL ALA SER THR ASP GLU TYR GLY ILE SEQRES 26 B 368 PRO PRO ALA TRP MET GLU GLY MET ALA PHE ALA TRP LEU SEQRES 27 B 368 ALA HIS ARG PHE LEU GLU ARG LEU PRO GLY ASN CYS PRO SEQRES 28 B 368 ASP VAL THR GLY ALA LEU GLY PRO ARG THR LEU GLY ALA SEQRES 29 B 368 LEU TYR PRO ALA HET ADP A 401 27 HET AH0 A 402 19 HET ADP B 401 27 HET VW0 B 402 24 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AH0 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT- HETNAM 2 AH0 3-YLOXY)-PROPIONIC ACID HETNAM VW0 (2~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-ACETAMIDO- HETNAM 2 VW0 2,5-BIS(OXIDANYL)-6-(PHOSPHONOOXYMETHYL)OXAN-4- HETNAM 3 VW0 YL]OXYPROPANOIC ACID HETSYN AH0 1,6-ANHYDRO-N-ACETYLMURAMIC ACID FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 AH0 C11 H17 N O7 FORMUL 6 VW0 C11 H20 N O11 P FORMUL 7 HOH *174(H2 O) HELIX 1 AA1 PRO A 38 ALA A 47 1 10 HELIX 2 AA2 ASP A 54 GLN A 81 1 28 HELIX 3 AA3 SER A 84 VAL A 88 5 5 HELIX 4 AA4 PRO A 102 HIS A 105 5 4 HELIX 5 AA5 ASN A 112 GLY A 121 1 10 HELIX 6 AA6 PHE A 128 ALA A 135 1 8 HELIX 7 AA7 VAL A 143 GLY A 152 1 10 HELIX 8 AA8 ASN A 187 GLN A 197 1 11 HELIX 9 AA9 ASP A 203 ASP A 205 5 3 HELIX 10 AB1 GLY A 206 GLY A 212 1 7 HELIX 11 AB2 ASN A 215 LEU A 223 1 9 HELIX 12 AB3 ASP A 225 ALA A 230 1 6 HELIX 13 AB4 ASN A 242 HIS A 253 1 12 HELIX 14 AB5 PRO A 257 GLN A 281 1 25 HELIX 15 AB6 GLY A 291 PHE A 295 5 5 HELIX 16 AB7 ASN A 296 MET A 307 1 12 HELIX 17 AB8 ASP A 316 GLY A 319 5 4 HELIX 18 AB9 PRO A 321 ALA A 323 5 3 HELIX 19 AC1 TRP A 324 GLU A 339 1 16 HELIX 20 AC2 CYS A 345 GLY A 350 1 6 HELIX 21 AC3 PRO B 38 ALA B 47 1 10 HELIX 22 AC4 ASP B 54 GLN B 81 1 28 HELIX 23 AC5 SER B 84 VAL B 88 5 5 HELIX 24 AC6 PRO B 102 HIS B 105 5 4 HELIX 25 AC7 ASN B 112 GLY B 121 1 10 HELIX 26 AC8 PHE B 128 ALA B 135 1 8 HELIX 27 AC9 VAL B 143 GLY B 152 1 10 HELIX 28 AD1 ASN B 187 GLY B 199 1 13 HELIX 29 AD2 ASP B 203 ASP B 205 5 3 HELIX 30 AD3 GLY B 206 GLY B 212 1 7 HELIX 31 AD4 ASN B 215 ALA B 224 1 10 HELIX 32 AD5 ASP B 225 ALA B 230 1 6 HELIX 33 AD6 ASN B 242 HIS B 253 1 12 HELIX 34 AD7 PRO B 257 GLN B 281 1 25 HELIX 35 AD8 GLY B 291 PHE B 295 5 5 HELIX 36 AD9 ASN B 296 MET B 307 1 12 HELIX 37 AE1 ASP B 316 GLY B 319 5 4 HELIX 38 AE2 TRP B 324 GLU B 339 1 16 HELIX 39 AE3 CYS B 345 GLY B 350 1 6 SHEET 1 AA1 6 THR A 27 PRO A 36 0 SHEET 2 AA1 6 GLY A 15 GLN A 23 -1 N MET A 16 O LEU A 35 SHEET 3 AA1 6 ARG A 3 MET A 8 -1 N MET A 8 O ASP A 17 SHEET 4 AA1 6 ALA A 90 SER A 93 1 O GLY A 92 N LEU A 7 SHEET 5 AA1 6 VAL A 124 ALA A 126 1 O VAL A 125 N ILE A 91 SHEET 6 AA1 6 ALA A 359 TYR A 361 -1 O TYR A 361 N VAL A 124 SHEET 1 AA2 2 GLN A 96 GLU A 101 0 SHEET 2 AA2 2 PHE A 106 ILE A 110 -1 O VAL A 108 N ARG A 99 SHEET 1 AA3 5 ARG A 179 PRO A 185 0 SHEET 2 AA3 5 PHE A 166 LEU A 172 -1 N LEU A 171 O ARG A 179 SHEET 3 AA3 5 ARG A 158 ILE A 163 -1 N ASN A 162 O ASN A 168 SHEET 4 AA3 5 GLU A 286 CYS A 290 1 O LEU A 288 N LEU A 161 SHEET 5 AA3 5 ARG A 311 SER A 314 1 O ARG A 311 N VAL A 287 SHEET 1 AA4 6 THR B 27 PRO B 36 0 SHEET 2 AA4 6 GLY B 15 GLN B 23 -1 N LEU B 20 O LEU B 30 SHEET 3 AA4 6 ARG B 3 MET B 8 -1 N MET B 8 O ASP B 17 SHEET 4 AA4 6 ALA B 90 SER B 93 1 O GLY B 92 N LEU B 5 SHEET 5 AA4 6 VAL B 124 ALA B 126 1 O VAL B 125 N ILE B 91 SHEET 6 AA4 6 ALA B 359 TYR B 361 -1 O TYR B 361 N VAL B 124 SHEET 1 AA5 2 GLN B 96 GLU B 101 0 SHEET 2 AA5 2 PHE B 106 ILE B 110 -1 O VAL B 108 N ARG B 99 SHEET 1 AA6 5 ARG B 179 PRO B 185 0 SHEET 2 AA6 5 PHE B 166 LEU B 172 -1 N LEU B 171 O ARG B 179 SHEET 3 AA6 5 ARG B 158 ILE B 163 -1 N ASN B 162 O ASN B 168 SHEET 4 AA6 5 GLU B 286 CYS B 290 1 O GLU B 286 N ALA B 159 SHEET 5 AA6 5 ARG B 311 SER B 314 1 O ARG B 311 N VAL B 287 CISPEP 1 ALA A 140 PRO A 141 0 -6.68 CISPEP 2 ALA B 140 PRO B 141 0 -9.20 CRYST1 90.583 90.583 174.478 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011040 0.006374 0.000000 0.00000 SCALE2 0.000000 0.012747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005731 0.00000