HEADER DNA BINDING PROTEIN 20-DEC-22 8C1L TITLE CRYSTAL STRUCTURE OF HNF4 ALPHA LBD IN COMPLEXES WITH PALMITIC ACID TITLE 2 AND GRIP-1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE NUCLEAR FACTOR 4-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HNF-4-ALPHA,NUCLEAR RECEPTOR SUBFAMILY 2 GROUP A MEMBER 1, COMPND 5 TRANSCRIPTION FACTOR 14,TCF-14,TRANSCRIPTION FACTOR HNF-4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: D, E; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNF4A, HNF4, NR2A1, TCF14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.NI,D.MERK,R.ZHUBI,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 10-JAN-24 8C1L 0 JRNL AUTH X.NI,D.MERK,R.ZHUBI,S.KNAPP, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF HNF4 ALPHA LBD IN COMPLEXES WITH JRNL TITL 2 PALMITIC ACID AND GRIP-1 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 30802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1591 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.81000 REMARK 3 B22 (A**2) : -2.09000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3605 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3615 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4856 ; 1.197 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8296 ; 1.251 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 439 ; 6.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;29.413 ;22.541 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;14.923 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3967 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 777 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1777 ; 2.102 ; 2.958 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1776 ; 2.094 ; 2.956 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2209 ; 2.900 ; 4.411 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2210 ; 2.901 ; 4.414 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1828 ; 2.706 ; 3.267 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1829 ; 2.706 ; 3.269 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2647 ; 4.065 ; 4.776 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3996 ; 5.783 ;35.670 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3997 ; 5.784 ;35.686 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 6608 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6609 12.3616 19.0676 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.1204 REMARK 3 T33: 0.1454 T12: 0.0063 REMARK 3 T13: -0.0159 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.9879 L22: 2.8133 REMARK 3 L33: 3.1134 L12: -0.3098 REMARK 3 L13: -1.8464 L23: 0.8550 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.2124 S13: 0.0190 REMARK 3 S21: 0.2463 S22: 0.1042 S23: -0.5601 REMARK 3 S31: 0.0900 S32: 0.4130 S33: -0.0790 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8149 0.7377 9.3737 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.0990 REMARK 3 T33: 0.1465 T12: 0.0447 REMARK 3 T13: 0.0669 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.2597 L22: 4.0771 REMARK 3 L33: 1.1848 L12: 0.6757 REMARK 3 L13: 0.6318 L23: 0.0892 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.2156 S13: -0.3306 REMARK 3 S21: -0.0753 S22: 0.0705 S23: -0.5201 REMARK 3 S31: 0.1011 S32: 0.1301 S33: -0.0865 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 340 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5494 25.4381 12.2692 REMARK 3 T TENSOR REMARK 3 T11: 0.2398 T22: 0.1470 REMARK 3 T33: 0.1699 T12: -0.0219 REMARK 3 T13: 0.0510 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 5.8968 L22: 6.3191 REMARK 3 L33: 3.4599 L12: 0.0417 REMARK 3 L13: 1.4996 L23: 2.1403 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.2928 S13: 0.4162 REMARK 3 S21: -0.2259 S22: 0.1060 S23: -0.4454 REMARK 3 S31: -0.3575 S32: 0.3762 S33: -0.0713 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 141 B 154 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2808 -4.1665 -13.3094 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.2147 REMARK 3 T33: 0.2565 T12: -0.0253 REMARK 3 T13: 0.0253 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 8.8981 L22: 16.1161 REMARK 3 L33: 11.0614 L12: -3.5105 REMARK 3 L13: 2.5708 L23: -3.3985 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.2113 S13: -0.5209 REMARK 3 S21: -0.1471 S22: -0.2186 S23: -0.2509 REMARK 3 S31: 0.6124 S32: 0.1762 S33: 0.1930 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 166 B 324 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3147 5.7970 -10.4289 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.0101 REMARK 3 T33: 0.0694 T12: -0.0082 REMARK 3 T13: 0.0634 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.0250 L22: 1.6204 REMARK 3 L33: 2.9686 L12: 0.1822 REMARK 3 L13: -0.8776 L23: -0.6933 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.0259 S13: -0.1635 REMARK 3 S21: -0.1193 S22: -0.0471 S23: 0.0821 REMARK 3 S31: 0.0929 S32: 0.0570 S33: 0.0208 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 325 B 368 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7175 17.2811 -7.2047 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.0872 REMARK 3 T33: 0.1198 T12: -0.0030 REMARK 3 T13: 0.0891 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 2.4439 L22: 4.5911 REMARK 3 L33: 1.2056 L12: -2.4908 REMARK 3 L13: 1.4300 L23: -1.6512 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.1703 S13: 0.1381 REMARK 3 S21: -0.0896 S22: -0.0573 S23: 0.1843 REMARK 3 S31: -0.0143 S32: 0.0537 S33: 0.0562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8C1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32417 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350 -- 10% ETHYLENE GLYCOL -- REMARK 280 0.1M BIS-TRIS-PROPANE PH 8.5 -- 0.2M SODIUM NITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.22850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.27700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 41.22850 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 137 REMARK 465 MET A 138 REMARK 465 SER A 139 REMARK 465 LEU A 140 REMARK 465 PRO A 141 REMARK 465 SER A 142 REMARK 465 ILE A 143 REMARK 465 ASN A 144 REMARK 465 GLN A 155 REMARK 465 ILE A 156 REMARK 465 THR A 157 REMARK 465 SER A 158 REMARK 465 PRO A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 GLY A 162 REMARK 465 ILE A 163 REMARK 465 ASN A 164 REMARK 465 GLY A 165 REMARK 465 SER B 137 REMARK 465 MET B 138 REMARK 465 SER B 139 REMARK 465 LEU B 140 REMARK 465 GLN B 155 REMARK 465 ILE B 156 REMARK 465 THR B 157 REMARK 465 SER B 158 REMARK 465 PRO B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 GLY B 162 REMARK 465 ILE B 163 REMARK 465 ASN B 164 REMARK 465 GLY B 165 REMARK 465 GLN B 318 REMARK 465 HIS E 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 147 CG CD1 CD2 REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LEU A 204 CG CD1 CD2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 ILE B 143 CG1 CG2 CD1 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 TYR B 319 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 320 CG OD1 OD2 REMARK 470 LYS D 8 CG CD CE NZ REMARK 470 LYS E 8 CG CD CE NZ REMARK 470 HIS E 11 CG ND1 CD2 CE1 NE2 REMARK 470 ARG E 12 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 15 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 214 30.75 -142.58 REMARK 500 ASP A 239 10.75 83.72 REMARK 500 ALA A 250 -122.95 43.11 REMARK 500 LEU A 263 -58.12 -120.21 REMARK 500 HIS B 214 31.57 -145.99 REMARK 500 ASP B 239 15.68 86.56 REMARK 500 ALA B 250 -125.89 42.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 8C1L A 139 368 UNP P41235 HNF4A_HUMAN 148 377 DBREF 8C1L B 139 368 UNP P41235 HNF4A_HUMAN 148 377 DBREF 8C1L D 7 15 UNP Q15596 NCOA2_HUMAN 687 695 DBREF 8C1L E 7 15 UNP Q15596 NCOA2_HUMAN 687 695 SEQADV 8C1L SER A 137 UNP P41235 EXPRESSION TAG SEQADV 8C1L MET A 138 UNP P41235 EXPRESSION TAG SEQADV 8C1L SER B 137 UNP P41235 EXPRESSION TAG SEQADV 8C1L MET B 138 UNP P41235 EXPRESSION TAG SEQRES 1 A 232 SER MET SER LEU PRO SER ILE ASN ALA LEU LEU GLN ALA SEQRES 2 A 232 GLU VAL LEU SER ARG GLN ILE THR SER PRO VAL SER GLY SEQRES 3 A 232 ILE ASN GLY ASP ILE ARG ALA LYS LYS ILE ALA SER ILE SEQRES 4 A 232 ALA ASP VAL CYS GLU SER MET LYS GLU GLN LEU LEU VAL SEQRES 5 A 232 LEU VAL GLU TRP ALA LYS TYR ILE PRO ALA PHE CYS GLU SEQRES 6 A 232 LEU PRO LEU ASP ASP GLN VAL ALA LEU LEU ARG ALA HIS SEQRES 7 A 232 ALA GLY GLU HIS LEU LEU LEU GLY ALA THR LYS ARG SER SEQRES 8 A 232 MET VAL PHE LYS ASP VAL LEU LEU LEU GLY ASN ASP TYR SEQRES 9 A 232 ILE VAL PRO ARG HIS CYS PRO GLU LEU ALA GLU MET SER SEQRES 10 A 232 ARG VAL SER ILE ARG ILE LEU ASP GLU LEU VAL LEU PRO SEQRES 11 A 232 PHE GLN GLU LEU GLN ILE ASP ASP ASN GLU TYR ALA TYR SEQRES 12 A 232 LEU LYS ALA ILE ILE PHE PHE ASP PRO ASP ALA LYS GLY SEQRES 13 A 232 LEU SER ASP PRO GLY LYS ILE LYS ARG LEU ARG SER GLN SEQRES 14 A 232 VAL GLN VAL SER LEU GLU ASP TYR ILE ASN ASP ARG GLN SEQRES 15 A 232 TYR ASP SER ARG GLY ARG PHE GLY GLU LEU LEU LEU LEU SEQRES 16 A 232 LEU PRO THR LEU GLN SER ILE THR TRP GLN MET ILE GLU SEQRES 17 A 232 GLN ILE GLN PHE ILE LYS LEU PHE GLY MET ALA LYS ILE SEQRES 18 A 232 ASP ASN LEU LEU GLN GLU MET LEU LEU GLY GLY SEQRES 1 B 232 SER MET SER LEU PRO SER ILE ASN ALA LEU LEU GLN ALA SEQRES 2 B 232 GLU VAL LEU SER ARG GLN ILE THR SER PRO VAL SER GLY SEQRES 3 B 232 ILE ASN GLY ASP ILE ARG ALA LYS LYS ILE ALA SER ILE SEQRES 4 B 232 ALA ASP VAL CYS GLU SER MET LYS GLU GLN LEU LEU VAL SEQRES 5 B 232 LEU VAL GLU TRP ALA LYS TYR ILE PRO ALA PHE CYS GLU SEQRES 6 B 232 LEU PRO LEU ASP ASP GLN VAL ALA LEU LEU ARG ALA HIS SEQRES 7 B 232 ALA GLY GLU HIS LEU LEU LEU GLY ALA THR LYS ARG SER SEQRES 8 B 232 MET VAL PHE LYS ASP VAL LEU LEU LEU GLY ASN ASP TYR SEQRES 9 B 232 ILE VAL PRO ARG HIS CYS PRO GLU LEU ALA GLU MET SER SEQRES 10 B 232 ARG VAL SER ILE ARG ILE LEU ASP GLU LEU VAL LEU PRO SEQRES 11 B 232 PHE GLN GLU LEU GLN ILE ASP ASP ASN GLU TYR ALA TYR SEQRES 12 B 232 LEU LYS ALA ILE ILE PHE PHE ASP PRO ASP ALA LYS GLY SEQRES 13 B 232 LEU SER ASP PRO GLY LYS ILE LYS ARG LEU ARG SER GLN SEQRES 14 B 232 VAL GLN VAL SER LEU GLU ASP TYR ILE ASN ASP ARG GLN SEQRES 15 B 232 TYR ASP SER ARG GLY ARG PHE GLY GLU LEU LEU LEU LEU SEQRES 16 B 232 LEU PRO THR LEU GLN SER ILE THR TRP GLN MET ILE GLU SEQRES 17 B 232 GLN ILE GLN PHE ILE LYS LEU PHE GLY MET ALA LYS ILE SEQRES 18 B 232 ASP ASN LEU LEU GLN GLU MET LEU LEU GLY GLY SEQRES 1 D 9 HIS LYS ILE LEU HIS ARG LEU LEU GLN SEQRES 1 E 9 HIS LYS ILE LEU HIS ARG LEU LEU GLN HET PLM A 401 18 HET EDO A 402 4 HET EDO A 403 4 HET PLM B 401 18 HET EDO B 402 4 HETNAM PLM PALMITIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 PLM 2(C16 H32 O2) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 10 HOH *90(H2 O) HELIX 1 AA1 ALA A 145 ARG A 154 1 10 HELIX 2 AA2 ASP A 166 LYS A 170 5 5 HELIX 3 AA3 SER A 174 TYR A 195 1 22 HELIX 4 AA4 ILE A 196 GLU A 201 1 6 HELIX 5 AA5 PRO A 203 HIS A 214 1 12 HELIX 6 AA6 HIS A 214 MET A 228 1 15 HELIX 7 AA7 CYS A 246 GLU A 251 5 6 HELIX 8 AA8 MET A 252 LEU A 263 1 12 HELIX 9 AA9 LEU A 263 GLN A 271 1 9 HELIX 10 AB1 ASP A 273 PHE A 286 1 14 HELIX 11 AB2 ASP A 295 ASP A 316 1 22 HELIX 12 AB3 GLY A 323 LEU A 330 1 8 HELIX 13 AB4 LEU A 330 PHE A 352 1 23 HELIX 14 AB5 ASP A 358 LEU A 366 1 9 HELIX 15 AB6 SER B 142 ARG B 154 1 13 HELIX 16 AB7 ASP B 166 LYS B 170 5 5 HELIX 17 AB8 SER B 174 TYR B 195 1 22 HELIX 18 AB9 ILE B 196 GLU B 201 1 6 HELIX 19 AC1 PRO B 203 HIS B 214 1 12 HELIX 20 AC2 HIS B 214 MET B 228 1 15 HELIX 21 AC3 CYS B 246 GLU B 251 5 6 HELIX 22 AC4 MET B 252 LEU B 263 1 12 HELIX 23 AC5 LEU B 263 GLN B 271 1 9 HELIX 24 AC6 ASP B 273 PHE B 286 1 14 HELIX 25 AC7 ASP B 295 ARG B 317 1 23 HELIX 26 AC8 GLY B 323 LEU B 330 1 8 HELIX 27 AC9 LEU B 330 PHE B 352 1 23 HELIX 28 AD1 ASP B 358 LEU B 366 1 9 HELIX 29 AD2 LYS D 8 GLN D 15 1 8 HELIX 30 AD3 ILE E 9 GLN E 15 1 7 SHEET 1 AA1 2 VAL A 233 LEU A 235 0 SHEET 2 AA1 2 ILE A 241 PRO A 243 -1 O VAL A 242 N LEU A 234 SHEET 1 AA2 2 VAL B 233 LEU B 235 0 SHEET 2 AA2 2 ILE B 241 PRO B 243 -1 O VAL B 242 N LEU B 234 CRYST1 57.277 82.457 57.360 90.00 111.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017459 0.000000 0.006997 0.00000 SCALE2 0.000000 0.012128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018782 0.00000