HEADER TRANSFERASE 21-DEC-22 8C25 TITLE PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX WITH JS-375 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: INOSINE-GUANOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: DEOD, E5M05_03615, E5M23_14660, E5M52_18960, E5M78_19105, SOURCE 5 ERS013440_01955, ERS027646_00621, ERS027659_03654, SOURCE 6 SAMEA2683035_02840; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PNP-INHIBITOR COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DJUKIC,P.PACHL,P.REZACOVA REVDAT 3 11-OCT-23 8C25 1 REMARK REVDAT 2 07-JUN-23 8C25 1 JRNL REVDAT 1 31-MAY-23 8C25 0 JRNL AUTH J.SKACEL,S.DJUKIC,O.BASZCZYNSKI,F.KALCIC,T.BILEK, JRNL AUTH 2 K.CHALUPSKY,J.KOZAK,A.DVORAKOVA,E.TLOUST'OVA,Z.KRAL'OVA, JRNL AUTH 3 M.SMIDKOVA,J.VOLDRICH,M.RUMLOVA,P.PACHL,J.BRYNDA,T.VUCKOVA, JRNL AUTH 4 M.FABRY,J.SNASEL,I.PICHOVA,P.REZACOVA, JRNL AUTH 5 H.MERTLIKOVA-KAISEROVA,Z.JANEBA JRNL TITL DESIGN, SYNTHESIS, BIOLOGICAL EVALUATION, AND JRNL TITL 2 CRYSTALLOGRAPHIC STUDY OF NOVEL PURINE NUCLEOSIDE JRNL TITL 3 PHOSPHORYLASE INHIBITORS. JRNL REF J.MED.CHEM. V. 66 6652 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 37134237 JRNL DOI 10.1021/ACS.JMEDCHEM.2C02097 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 91714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6674 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 621 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.466 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4127 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3868 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5669 ; 1.674 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8973 ; 0.564 ; 1.541 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 565 ; 6.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 37 ;10.616 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 595 ;13.178 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4874 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 768 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2177 ; 2.169 ; 1.852 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2177 ; 2.169 ; 1.852 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2732 ; 3.372 ; 2.765 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2733 ; 3.374 ; 2.765 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1950 ; 3.051 ; 2.120 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1951 ; 3.050 ; 2.121 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2922 ; 4.577 ; 3.080 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4543 ; 6.668 ;29.936 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4312 ; 6.303 ;26.454 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8C25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1292127645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 180675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.26400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM CHLORIDE, 100 MM SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.56000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.56000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.56000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.56000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.56000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.56000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.56000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.56000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.56000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.56000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.56000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.56000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 VAL B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 PRO B 4 REMARK 465 ARG B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ASP B 7 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 412 O HOH B 523 7454 0.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 88 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 125 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 165 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 209 -50.53 80.80 REMARK 500 GLU B 152 77.88 -108.16 REMARK 500 PHE B 153 72.94 -103.63 REMARK 500 SER B 161 118.24 -38.56 REMARK 500 THR B 209 -49.37 81.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 13 0.12 SIDE CHAIN REMARK 500 ARG A 14 0.11 SIDE CHAIN REMARK 500 ARG A 165 0.08 SIDE CHAIN REMARK 500 ARG B 13 0.09 SIDE CHAIN REMARK 500 ARG B 125 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 733 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 100 O REMARK 620 2 GLU A 212 OE1 104.7 REMARK 620 3 HOH A 415 O 106.5 97.2 REMARK 620 4 HOH A 492 O 104.6 71.4 148.7 REMARK 620 5 HOH A 593 O 99.9 154.0 83.5 94.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZSQ RELATED DB: PDB REMARK 900 DIFFERENT LIGAND REMARK 900 RELATED ID: 7ZSR RELATED DB: PDB REMARK 900 DIFFERENT LIGAND DBREF1 8C25 A 2 268 UNP A0A045IAS2_MYCTX DBREF2 8C25 A A0A045IAS2 2 268 DBREF1 8C25 B 2 268 UNP A0A045IAS2_MYCTX DBREF2 8C25 B A0A045IAS2 2 268 SEQADV 8C25 VAL A 1 UNP A0A045IAS EXPRESSION TAG SEQADV 8C25 VAL B 1 UNP A0A045IAS EXPRESSION TAG SEQRES 1 A 268 VAL ALA ASP PRO ARG PRO ASP PRO ASP GLU LEU ALA ARG SEQRES 2 A 268 ARG ALA ALA GLN VAL ILE ALA ASP ARG THR GLY ILE GLY SEQRES 3 A 268 GLU HIS ASP VAL ALA VAL VAL LEU GLY SER GLY TRP LEU SEQRES 4 A 268 PRO ALA VAL ALA ALA LEU GLY SER PRO THR THR VAL LEU SEQRES 5 A 268 PRO GLN ALA GLU LEU PRO GLY PHE VAL PRO PRO THR ALA SEQRES 6 A 268 ALA GLY HIS ALA GLY GLU LEU LEU SER VAL PRO ILE GLY SEQRES 7 A 268 ALA HIS ARG VAL LEU VAL LEU ALA GLY ARG ILE HIS ALA SEQRES 8 A 268 TYR GLU GLY HIS ASP LEU ARG TYR VAL VAL HIS PRO VAL SEQRES 9 A 268 ARG ALA ALA ARG ALA ALA GLY ALA GLN ILE MET VAL LEU SEQRES 10 A 268 THR ASN ALA ALA GLY GLY LEU ARG ALA ASP LEU GLN VAL SEQRES 11 A 268 GLY GLN PRO VAL LEU ILE SER ASP HIS LEU ASN LEU THR SEQRES 12 A 268 ALA ARG SER PRO LEU VAL GLY GLY GLU PHE VAL ASP LEU SEQRES 13 A 268 THR ASP ALA TYR SER PRO ARG LEU ARG GLU LEU ALA ARG SEQRES 14 A 268 GLN SER ASP PRO GLN LEU ALA GLU GLY VAL TYR ALA GLY SEQRES 15 A 268 LEU PRO GLY PRO HIS TYR GLU THR PRO ALA GLU ILE ARG SEQRES 16 A 268 MET LEU GLN THR LEU GLY ALA ASP LEU VAL GLY MET SER SEQRES 17 A 268 THR VAL HIS GLU THR ILE ALA ALA ARG ALA ALA GLY ALA SEQRES 18 A 268 GLU VAL LEU GLY VAL SER LEU VAL THR ASN LEU ALA ALA SEQRES 19 A 268 GLY ILE THR GLY GLU PRO LEU SER HIS ALA GLU VAL LEU SEQRES 20 A 268 ALA ALA GLY ALA ALA SER ALA THR ARG MET GLY ALA LEU SEQRES 21 A 268 LEU ALA ASP VAL ILE ALA ARG PHE SEQRES 1 B 268 VAL ALA ASP PRO ARG PRO ASP PRO ASP GLU LEU ALA ARG SEQRES 2 B 268 ARG ALA ALA GLN VAL ILE ALA ASP ARG THR GLY ILE GLY SEQRES 3 B 268 GLU HIS ASP VAL ALA VAL VAL LEU GLY SER GLY TRP LEU SEQRES 4 B 268 PRO ALA VAL ALA ALA LEU GLY SER PRO THR THR VAL LEU SEQRES 5 B 268 PRO GLN ALA GLU LEU PRO GLY PHE VAL PRO PRO THR ALA SEQRES 6 B 268 ALA GLY HIS ALA GLY GLU LEU LEU SER VAL PRO ILE GLY SEQRES 7 B 268 ALA HIS ARG VAL LEU VAL LEU ALA GLY ARG ILE HIS ALA SEQRES 8 B 268 TYR GLU GLY HIS ASP LEU ARG TYR VAL VAL HIS PRO VAL SEQRES 9 B 268 ARG ALA ALA ARG ALA ALA GLY ALA GLN ILE MET VAL LEU SEQRES 10 B 268 THR ASN ALA ALA GLY GLY LEU ARG ALA ASP LEU GLN VAL SEQRES 11 B 268 GLY GLN PRO VAL LEU ILE SER ASP HIS LEU ASN LEU THR SEQRES 12 B 268 ALA ARG SER PRO LEU VAL GLY GLY GLU PHE VAL ASP LEU SEQRES 13 B 268 THR ASP ALA TYR SER PRO ARG LEU ARG GLU LEU ALA ARG SEQRES 14 B 268 GLN SER ASP PRO GLN LEU ALA GLU GLY VAL TYR ALA GLY SEQRES 15 B 268 LEU PRO GLY PRO HIS TYR GLU THR PRO ALA GLU ILE ARG SEQRES 16 B 268 MET LEU GLN THR LEU GLY ALA ASP LEU VAL GLY MET SER SEQRES 17 B 268 THR VAL HIS GLU THR ILE ALA ALA ARG ALA ALA GLY ALA SEQRES 18 B 268 GLU VAL LEU GLY VAL SER LEU VAL THR ASN LEU ALA ALA SEQRES 19 B 268 GLY ILE THR GLY GLU PRO LEU SER HIS ALA GLU VAL LEU SEQRES 20 B 268 ALA ALA GLY ALA ALA SER ALA THR ARG MET GLY ALA LEU SEQRES 21 B 268 LEU ALA ASP VAL ILE ALA ARG PHE HET JU9 A 301 25 HET GOL A 302 6 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET NA A 306 1 HET GOL A 307 6 HET GOL A 308 6 HET JU9 B 301 25 HET GOL B 302 12 HET GOL B 303 6 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HET CL B 307 1 HETNAM JU9 [(~{E})-2-[4-METHOXY-2-[(4-OXIDANYLIDENE-3,5- HETNAM 2 JU9 DIHYDROPYRROLO[3,2-D]PYRIMIDIN-7-YL) HETNAM 3 JU9 SULFANYL]PHENYL]ETHENYL]PHOSPHONIC ACID HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 JU9 2(C15 H14 N3 O5 P S) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 5 CL 7(CL 1-) FORMUL 8 NA NA 1+ FORMUL 18 HOH *621(H2 O) HELIX 1 AA1 ASP A 7 GLY A 24 1 18 HELIX 2 AA2 TRP A 38 PRO A 40 5 3 HELIX 3 AA3 ALA A 41 GLY A 46 1 6 HELIX 4 AA4 ALA A 55 LEU A 57 5 3 HELIX 5 AA5 HIS A 90 GLY A 94 5 5 HELIX 6 AA6 ASP A 96 ALA A 110 1 15 HELIX 7 AA7 SER A 161 ASP A 172 1 12 HELIX 8 AA8 THR A 190 GLY A 201 1 12 HELIX 9 AA9 THR A 209 ALA A 219 1 11 HELIX 10 AB1 SER A 242 SER A 253 1 12 HELIX 11 AB2 SER A 253 ARG A 267 1 15 HELIX 12 AB3 ASP B 7 GLY B 24 1 18 HELIX 13 AB4 TRP B 38 LEU B 45 5 8 HELIX 14 AB5 ALA B 55 LEU B 57 5 3 HELIX 15 AB6 HIS B 90 GLY B 94 5 5 HELIX 16 AB7 ASP B 96 ALA B 110 1 15 HELIX 17 AB8 SER B 161 ASP B 172 1 12 HELIX 18 AB9 THR B 190 LEU B 200 1 11 HELIX 19 AC1 THR B 209 ALA B 219 1 11 HELIX 20 AC2 SER B 242 ALA B 266 1 25 SHEET 1 AA110 THR A 50 PRO A 53 0 SHEET 2 AA110 GLU A 71 ILE A 77 -1 O LEU A 72 N LEU A 52 SHEET 3 AA110 HIS A 80 ALA A 86 -1 O VAL A 82 N VAL A 75 SHEET 4 AA110 VAL A 30 LEU A 34 1 N VAL A 32 O LEU A 85 SHEET 5 AA110 ILE A 114 GLY A 123 1 O VAL A 116 N ALA A 31 SHEET 6 AA110 GLU A 222 LEU A 232 1 O LEU A 224 N LEU A 117 SHEET 7 AA110 PRO A 133 ASN A 141 -1 N VAL A 134 O SER A 227 SHEET 8 AA110 ALA A 176 GLY A 182 1 O GLY A 182 N LEU A 140 SHEET 9 AA110 LEU A 204 GLY A 206 1 O LEU A 204 N ALA A 181 SHEET 10 AA110 ILE A 114 GLY A 123 -1 N GLY A 122 O VAL A 205 SHEET 1 AA210 THR B 50 PRO B 53 0 SHEET 2 AA210 GLU B 71 ILE B 77 -1 O LEU B 72 N LEU B 52 SHEET 3 AA210 HIS B 80 ALA B 86 -1 O VAL B 84 N LEU B 73 SHEET 4 AA210 VAL B 30 LEU B 34 1 N VAL B 32 O LEU B 85 SHEET 5 AA210 ILE B 114 GLY B 123 1 O VAL B 116 N ALA B 31 SHEET 6 AA210 GLU B 222 LEU B 232 1 O GLU B 222 N MET B 115 SHEET 7 AA210 PRO B 133 ASN B 141 -1 N VAL B 134 O SER B 227 SHEET 8 AA210 ALA B 176 GLY B 182 1 O GLY B 182 N LEU B 140 SHEET 9 AA210 LEU B 204 GLY B 206 1 O LEU B 204 N ALA B 181 SHEET 10 AA210 ILE B 114 GLY B 123 -1 N GLY B 122 O VAL B 205 LINK O VAL A 100 NA NA A 306 1555 1555 2.44 LINK OE1 GLU A 212 NA NA A 306 1555 1555 2.43 LINK NA NA A 306 O HOH A 415 1555 1555 2.32 LINK NA NA A 306 O HOH A 492 1555 1555 2.23 LINK NA NA A 306 O HOH A 593 1555 1555 2.50 CISPEP 1 GLY A 185 PRO A 186 0 2.89 CISPEP 2 GLY B 185 PRO B 186 0 4.19 CRYST1 125.120 125.120 125.120 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007992 0.00000